View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5231-Insertion-1 (Length: 890)

Name: NF5231-Insertion-1
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5231-Insertion-1
NF5231-Insertion-1
[»] chr5 (41 HSPs)
chr5 (65-275)||(27585506-27585721)
chr5 (551-677)||(27585787-27585909)
chr5 (676-890)||(16198709-16198935)
chr5 (676-890)||(38869279-38869504)
chr5 (676-888)||(9364252-9364476)
chr5 (677-890)||(28822253-28822483)
chr5 (676-888)||(16799240-16799466)
chr5 (684-887)||(34756289-34756504)
chr5 (674-890)||(7670883-7671120)
chr5 (676-862)||(27079000-27079197)
chr5 (344-450)||(41527007-41527113)
chr5 (353-450)||(19087809-19087906)
chr5 (680-862)||(19523188-19523380)
chr5 (344-443)||(8850302-8850401)
chr5 (676-890)||(27924041-27924267)
chr5 (676-862)||(15480006-15480200)
chr5 (674-887)||(30854292-30854516)
chr5 (676-862)||(36187795-36187990)
chr5 (684-890)||(40389461-40389677)
chr5 (681-862)||(2274879-2275070)
chr5 (676-804)||(31194528-31194655)
chr5 (356-450)||(12645380-12645474)
chr5 (676-887)||(16591990-16592212)
chr5 (356-450)||(17768041-17768133)
chr5 (676-845)||(22986473-22986652)
chr5 (676-752)||(23283943-23284019)
chr5 (351-450)||(13541921-13542020)
chr5 (690-804)||(7338056-7338170)
chr5 (805-853)||(23284116-23284164)
chr5 (353-451)||(19087789-19087887)
chr5 (676-797)||(31881348-31881470)
chr5 (355-451)||(13391561-13391658)
chr5 (351-435)||(30920041-30920125)
chr5 (384-451)||(30920037-30920104)
chr5 (353-451)||(38244097-38244195)
chr5 (7-44)||(27585466-27585503)
chr5 (355-451)||(13654539-13654635)
chr5 (676-752)||(26718865-26718941)
chr5 (676-752)||(26988609-26988685)
chr5 (356-451)||(12645363-12645458)
chr5 (351-450)||(38244117-38244216)
[»] chr7 (37 HSPs)
chr7 (668-890)||(25010392-25010619)
chr7 (675-890)||(20091196-20091424)
chr7 (669-890)||(23550981-23551214)
chr7 (674-887)||(8171455-8171679)
chr7 (673-890)||(10329324-10329553)
chr7 (676-890)||(38414793-38415019)
chr7 (669-890)||(19692053-19692286)
chr7 (676-885)||(29077184-29077404)
chr7 (676-887)||(24525599-24525825)
chr7 (676-887)||(18776683-18776906)
chr7 (676-890)||(48983756-48983987)
chr7 (676-890)||(47984885-47985113)
chr7 (676-804)||(26254050-26254178)
chr7 (353-443)||(35274451-35274541)
chr7 (676-862)||(12596207-12596400)
chr7 (353-448)||(12423679-12423774)
chr7 (678-890)||(8239644-8239869)
chr7 (676-752)||(28749819-28749895)
chr7 (770-862)||(10955473-10955575)
chr7 (690-752)||(40357311-40357373)
chr7 (343-404)||(47877873-47877934)
chr7 (399-451)||(28038557-28038609)
chr7 (677-804)||(33162257-33162384)
chr7 (344-422)||(28038475-28038553)
chr7 (370-450)||(48634205-48634285)
chr7 (377-442)||(35725920-35725985)
chr7 (356-451)||(48634207-48634302)
chr7 (676-797)||(12419413-12419533)
chr7 (353-442)||(34427546-34427635)
chr7 (344-428)||(28038553-28038637)
chr7 (353-451)||(35274424-35274522)
chr7 (416-450)||(48873016-48873050)
chr7 (805-846)||(9021856-9021897)
chr7 (355-412)||(12274879-12274936)
chr7 (809-846)||(23859078-23859115)
chr7 (674-751)||(23859182-23859259)
chr7 (351-448)||(39751074-39751171)
[»] chr4 (44 HSPs)
chr4 (682-890)||(38352189-38352398)
chr4 (764-890)||(24969401-24969529)
chr4 (676-890)||(34027543-34027768)
chr4 (676-890)||(54083160-54083385)
chr4 (676-890)||(32128548-32128774)
chr4 (676-890)||(2790659-2790884)
chr4 (676-890)||(37777140-37777366)
chr4 (676-887)||(55255236-55255447)
chr4 (675-890)||(16844985-16845211)
chr4 (676-890)||(19498468-19498691)
chr4 (675-862)||(54780771-54780969)
chr4 (687-862)||(43455460-43455644)
chr4 (676-887)||(34768492-34768714)
chr4 (680-887)||(47128954-47129172)
chr4 (676-890)||(16882313-16882538)
chr4 (344-451)||(51313469-51313576)
chr4 (690-887)||(38209522-38209731)
chr4 (675-890)||(40089480-40089715)
chr4 (674-862)||(32915379-32915577)
chr4 (353-451)||(2091379-2091477)
chr4 (676-887)||(10978867-10979092)
chr4 (676-800)||(16922245-16922370)
chr4 (676-804)||(17679462-17679589)
chr4 (680-862)||(1105526-1105717)
chr4 (669-804)||(10428109-10428242)
chr4 (676-862)||(48209234-48209436)
chr4 (692-804)||(23508443-23508556)
chr4 (679-890)||(35779248-35779468)
chr4 (690-890)||(35465071-35465281)
chr4 (676-862)||(5128758-5128955)
chr4 (675-862)||(37514653-37514849)
chr4 (676-746)||(24969716-24969786)
chr4 (770-887)||(13460174-13460303)
chr4 (337-442)||(32125377-32125483)
chr4 (805-887)||(23509854-23509938)
chr4 (676-804)||(36118377-36118503)
chr4 (691-804)||(52468348-52468459)
chr4 (692-752)||(2975358-2975418)
chr4 (692-752)||(51964824-51964884)
chr4 (764-803)||(9578669-9578708)
chr4 (351-429)||(33004180-33004258)
chr4 (821-862)||(10428277-10428318)
chr4 (373-430)||(12074781-12074838)
chr4 (771-804)||(40217294-40217327)
[»] chr8 (20 HSPs)
chr8 (671-890)||(23606543-23606773)
chr8 (676-890)||(42600741-42600967)
chr8 (676-890)||(23798179-23798405)
chr8 (673-890)||(10917350-10917578)
chr8 (676-890)||(45475776-45476001)
chr8 (676-887)||(2952137-2952362)
chr8 (679-887)||(30883291-30883512)
chr8 (670-862)||(13534600-13534800)
chr8 (670-862)||(13624140-13624340)
chr8 (676-887)||(3048435-3048658)
chr8 (676-887)||(41879143-41879364)
chr8 (676-804)||(37430076-37430204)
chr8 (690-887)||(5860674-5860885)
chr8 (676-752)||(20003728-20003804)
chr8 (348-449)||(108199-108301)
chr8 (355-451)||(2627204-2627301)
chr8 (353-451)||(30857259-30857358)
chr8 (381-448)||(289150-289218)
chr8 (353-442)||(4578227-4578318)
chr8 (805-846)||(5942701-5942742)
[»] scaffold0039 (1 HSPs)
scaffold0039 (675-890)||(106497-106724)
[»] chr1 (49 HSPs)
chr1 (676-890)||(17168926-17169151)
chr1 (668-890)||(19955687-19955920)
chr1 (676-890)||(9180922-9181148)
chr1 (676-888)||(40501707-40501931)
chr1 (676-890)||(9172940-9173166)
chr1 (676-887)||(27906646-27906857)
chr1 (687-890)||(44895622-44895832)
chr1 (676-887)||(44655714-44655936)
chr1 (675-887)||(5316653-5316876)
chr1 (676-862)||(14146300-14146495)
chr1 (676-890)||(23185397-23185622)
chr1 (676-890)||(1366797-1367021)
chr1 (676-890)||(51607358-51607583)
chr1 (676-890)||(4971536-4971761)
chr1 (213-327)||(45725118-45725233)
chr1 (353-443)||(457611-457701)
chr1 (353-443)||(30412608-30412698)
chr1 (353-450)||(4540632-4540729)
chr1 (675-881)||(5027528-5027747)
chr1 (679-890)||(13913401-13913625)
chr1 (353-443)||(47911861-47911951)
chr1 (676-797)||(22865378-22865499)
chr1 (676-862)||(6771791-6771989)
chr1 (682-862)||(16140055-16140244)
chr1 (764-890)||(27559607-27559745)
chr1 (679-862)||(50881430-50881621)
chr1 (675-862)||(3406418-3406615)
chr1 (675-862)||(3440205-3440402)
chr1 (676-797)||(6889686-6889805)
chr1 (676-797)||(6891532-6891651)
chr1 (690-752)||(34247146-34247208)
chr1 (675-752)||(21740851-21740928)
chr1 (693-862)||(41697072-41697250)
chr1 (340-451)||(42074163-42074275)
chr1 (353-450)||(15241137-15241229)
chr1 (344-451)||(44024187-44024292)
chr1 (132-166)||(45725316-45725350)
chr1 (337-414)||(29853231-29853308)
chr1 (355-451)||(34768309-34768405)
chr1 (351-451)||(47911880-47911980)
chr1 (353-451)||(21945088-21945187)
chr1 (355-442)||(42915686-42915773)
chr1 (353-451)||(457584-457682)
chr1 (373-415)||(26700071-26700113)
chr1 (353-451)||(30412627-30412725)
chr1 (342-451)||(47084594-47084704)
chr1 (353-442)||(4540660-4540749)
chr1 (763-804)||(38547040-38547081)
chr1 (675-752)||(39134637-39134714)
[»] chr2 (30 HSPs)
chr2 (673-889)||(26716087-26716316)
chr2 (676-886)||(24410398-24410623)
chr2 (676-890)||(27506659-27506884)
chr2 (676-887)||(4505855-4506078)
chr2 (674-887)||(3155178-3155403)
chr2 (676-888)||(29939781-29940004)
chr2 (676-808)||(8327670-8327801)
chr2 (679-890)||(10762488-10762709)
chr2 (669-887)||(12337358-12337589)
chr2 (679-887)||(6964968-6965186)
chr2 (676-862)||(3952994-3953188)
chr2 (676-887)||(9045990-9046213)
chr2 (329-451)||(34360797-34360919)
chr2 (351-443)||(33853839-33853931)
chr2 (351-450)||(25551946-25552045)
chr2 (676-862)||(8906996-8907193)
chr2 (679-804)||(34694031-34694155)
chr2 (679-804)||(34716443-34716567)
chr2 (347-450)||(37309247-37309351)
chr2 (680-804)||(40636194-40636317)
chr2 (676-789)||(1396617-1396730)
chr2 (337-451)||(32082119-32082234)
chr2 (682-752)||(5952642-5952712)
chr2 (344-451)||(33853860-33853967)
chr2 (351-429)||(36447000-36447078)
chr2 (686-752)||(37182751-37182817)
chr2 (676-862)||(7162772-7162967)
chr2 (355-451)||(19268090-19268187)
chr2 (764-804)||(13800550-13800590)
chr2 (764-804)||(42029201-42029241)
[»] chr3 (36 HSPs)
chr3 (675-890)||(34290553-34290780)
chr3 (682-890)||(48157101-48157310)
chr3 (680-890)||(37168329-37168551)
chr3 (676-890)||(8073257-8073481)
chr3 (676-890)||(50939152-50939377)
chr3 (675-890)||(43207156-43207381)
chr3 (680-890)||(44708439-44708660)
chr3 (676-862)||(21582763-21582960)
chr3 (676-862)||(47467676-47467872)
chr3 (676-887)||(38681011-38681234)
chr3 (676-887)||(54619121-54619344)
chr3 (675-887)||(36715941-36716166)
chr3 (676-890)||(53506802-53507028)
chr3 (676-890)||(54407073-54407301)
chr3 (677-887)||(3953816-3954037)
chr3 (676-862)||(27078486-27078683)
chr3 (676-862)||(27084283-27084480)
chr3 (373-450)||(20512696-20512773)
chr3 (679-862)||(53149235-53149428)
chr3 (675-752)||(48720428-48720505)
chr3 (674-846)||(36605973-36606154)
chr3 (714-890)||(9878644-9878831)
chr3 (676-752)||(50258542-50258618)
chr3 (690-804)||(18372543-18372656)
chr3 (676-862)||(42098793-42098989)
chr3 (676-738)||(29620364-29620426)
chr3 (344-450)||(33068223-33068330)
chr3 (353-430)||(29398509-29398586)
chr3 (356-416)||(19959156-19959216)
chr3 (351-410)||(43597966-43598025)
chr3 (354-443)||(14599556-14599645)
chr3 (821-862)||(29620461-29620502)
chr3 (805-887)||(18372444-18372528)
chr3 (381-429)||(45799951-45799999)
chr3 (382-423)||(35183544-35183585)
chr3 (370-451)||(38207453-38207534)
[»] chr6 (25 HSPs)
chr6 (676-890)||(27788608-27788832)
chr6 (675-888)||(17353918-17354143)
chr6 (344-450)||(7055590-7055696)
chr6 (676-887)||(13727317-13727540)
chr6 (676-890)||(20711638-20711864)
chr6 (674-890)||(235141-235369)
chr6 (676-887)||(21280510-21280733)
chr6 (686-890)||(28075745-28075964)
chr6 (676-887)||(21479459-21479683)
chr6 (344-445)||(9758709-9758809)
chr6 (682-890)||(19987123-19987330)
chr6 (677-887)||(33774082-33774305)
chr6 (676-862)||(30832443-30832638)
chr6 (674-862)||(24710912-24711113)
chr6 (671-804)||(27314092-27314225)
chr6 (678-846)||(1155767-1155947)
chr6 (680-890)||(34397819-34398039)
chr6 (393-451)||(26716976-26717034)
chr6 (764-862)||(19737698-19737806)
chr6 (353-451)||(3846442-3846540)
chr6 (353-450)||(9605378-9605476)
chr6 (355-451)||(16120995-16121092)
chr6 (351-442)||(20703443-20703535)
chr6 (353-435)||(9210639-9210721)
chr6 (764-797)||(6159505-6159538)
[»] scaffold0070 (1 HSPs)
scaffold0070 (676-862)||(1332-1527)
[»] scaffold0001 (2 HSPs)
scaffold0001 (676-752)||(183168-183244)
scaffold0001 (805-862)||(181908-181965)
[»] scaffold0122 (1 HSPs)
scaffold0122 (351-451)||(15101-15202)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 65 - 275
Target Start/End: Original strand, 27585506 - 27585721
Alignment:
Q  65 tacaaaggaattcatatttttgggtaaatggaacagatatcaatccgctatgaagaaaagnnnnnnntagaaagagaatctctctttgcaataaaggaga 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  27585506 tacaaaggaattcatatttttgggtaaatggaacagatatcaatccgctatgaagaaaagaaaaaaatagaaagagaatctctctttgcaataaaggaga 27585605  T
Q  165 taggtagaagtcaaaat----aac-ttgatttggtttccacttggcctttttcaattccatttttagaacaatttttcttactctccaataatcttcatg 259  Q
    ||||| |||||||||||    ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27585606 taggtcgaagtcaaaatcaggaactttgatttggtttccacttggcctttctcaattccatttttagaacaatttttcttactctgcaataatcttcatg 27585705  T
Q  260 atcaaactgaggcaaa 275  Q
    ||||||||||||||||    
T  27585706 atcaaactgaggcaaa 27585721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 551 - 677
Target Start/End: Original strand, 27585787 - 27585909
Alignment:
Q  551 catagttaaatttcaacctaactatctagtcttacattaatatagagaattaagtgtgttcaacaaagaagagttgcacaagttttatcaactgtgttca 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27585787 catagttaaatttcaacctaactatctagtcttacattaatatagagaattaactgtgttcaacaaagaagagttgcacaagttttatcaactgtgttca 27585886  T
Q  651 gtgcatattttcgacgctatataaaca 677  Q
    |||    ||||||||||||||||||||    
T  27585887 gtg----ttttcgacgctatataaaca 27585909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 16198709 - 16198935
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| ||||||    
T  16198709 cagggccttccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttaaaaagcaatgttctatt 16198808  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  16198809 tatattttttaaaagataaatataaggtgtcgtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 16198908  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  16198909 aagcaagaggacctaattctaataggc 16198935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 38869279 - 38869504
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||| |         ||||| ||||||    
T  38869279 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggtcagttataaaatcaaaacgtattttt-tttaaaagagcaatgttctatt 38869377  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| |||    
T  38869378 tatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacccccacctaacaccaa 38869477  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  38869478 aagcaagaggacctaattctaataggc 38869504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 676 - 888
Target Start/End: Complemental strand, 9364476 - 9364252
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||  |||||||||||||||||||| ||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| ||||||    
T  9364476 cagggccacccctaagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttttttaaaagcaatgttctatt 9364377  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  9364376 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacatcaa 9364277  T
Q  865 aagc-agaggatctaattctaatag 888  Q
    |||| |||||| |||||||||||||    
T  9364276 aagcaagaggacctaattctaatag 9364252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 677 - 890
Target Start/End: Original strand, 28822253 - 28822483
Alignment:
Q  677 agggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta-----tttttatnnnnnnnntcaatgatc 771  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||     ||||| |         ||||| ||    
T  28822253 agggccgtccctaagaattcggaggttcggctttgggaatgaaaagaggttagtgataaaatcaaaacgtattttttttttttttaaaagagcaatgttc 28822352  T
Q  772 tatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca 861  Q
    |||||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||    
T  28822353 tatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgatgaacccccacctaaca 28822452  T
Q  862 -caaaagc-agaggatctaattctaataggc 890  Q
     ||||||| |||||| |||||||||||||||    
T  28822453 ccaaaagcaagaggacctaattctaataggc 28822483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 676 - 888
Target Start/End: Original strand, 16799240 - 16799466
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta--tttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||||||||||  ||||| |        | |||| ||||    
T  16799240 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaatcaaaacgtattttttttttaaaagagtaaatgttcta 16799339  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||| ||||||||||||||          ||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| |    
T  16799340 tttatattttttaaaaaataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacccccacataacacc 16799439  T
Q  863 aaaagc-agaggatctaattctaatag 888  Q
    |||||| |||||| |||||||||||||    
T  16799440 aaaagcaagaggacctaattctaatag 16799466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 684 - 887
Target Start/End: Original strand, 34756289 - 34756504
Alignment:
Q  684 tccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatttt 783  Q
    ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||||||||||    
T  34756289 tccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatttatatttt 34756388  T
Q  784 ttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac-acaaaagc-aga 871  Q
    |||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||||| | |||    
T  34756389 ttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaacaaaatcaaga 34756488  T
Q  872 ggatctaattctaata 887  Q
    ||| ||||||||||||    
T  34756489 ggaactaattctaata 34756504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 674 - 890
Target Start/End: Complemental strand, 7671120 - 7670883
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt--------atnnnnnnnntca 765  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||        |          ||    
T  7671120 aacagggccgtccttaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttttaaaaaaaaaaagca 7671021  T
Q  766 atgatctatttata-ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtaccccca 854  Q
    ||| |||||||||| |||||||||||||||||||||||||           |||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  7671020 atgttctatttatatttttttaaaagataaatataaggtgccgtatatttacggtacacccaaaggtgaaaatgactaccgtatacatgaggtatcccca 7670921  T
Q  855 cctaaca-caaaagc-agaggatctaattctaataggc 890  Q
    ||||||| ||||||| |||||| |||||||||||||||    
T  7670920 cctaacaccaaaagcaagaggacctaattctaataggc 7670883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 27079197 - 27079000
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat-ttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||||||| |||| |         ||||| |||||    
T  27079197 cagggccgtccctgagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgtattttttttttaaaagagcaatgttctat 27079098  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| ||||||          |||||||||| |||| ||||||||||||| |||||| ||||| |||||||||||||||    
T  27079097 ttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctaaaggtgaaaatgactactgtatacatgaggaacccccacctaacac 27079000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 41527113 - 41527007
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| | ||||||||||||||||||||||| |||||||||| |||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  41527113 tccgatcacatttataagcaaaaatgtactttataagttcattgaatatataatatatttggtgtatctattgaccaaatacattaagtattgaatgaat 41527014  T
Q  444 ttaaaaa 450  Q
     ||||||    
T  41527013 ctaaaaa 41527007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 19087906 - 19087809
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| ||||||    
T  19087906 atttataagcaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatattgaacaaatacattaagtattcaatgaatataaaaa 19087809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 680 - 862
Target Start/End: Complemental strand, 19523380 - 19523188
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||| |         |  || ||||||||||    
T  19523380 gccgtccctgagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacgtgttttttttttaaagagcggtgttctatttata 19523281  T
Q  780 ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||| ||||||          |||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||    
T  19523280 ttttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccatatacatgaggaacccccacctaacac 19523188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 344 - 443
Target Start/End: Complemental strand, 8850401 - 8850302
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| | ||||||||| |||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  8850401 tccgatcacatttataagtaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 8850302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 27924267 - 27924041
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||  |||||||||||| |||||| || ||  |||||||||||  |||||||||||||||||||||||||| |         |||||| |||||    
T  27924267 cagggccgtttctaagaattcgggggctcgactctgagaatgaaaagaggccagtgataaaatcaaaacgtatttttttaaaaaaaagcaatgacctatt 27924168  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          |||||||| |||||| | |||||||||||||||||| ||||| || ||| ||||||| |||    
T  27924167 tatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtaaaaatgactaccgtatacatgaggaacgcccgcctaacaccaa 27924068  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| | |||| |||||||||||||||    
T  27924067 aagcaaaaggacctaattctaataggc 27924041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 15480006 - 15480200
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||||||| ||||||| |         | ||| ||||||    
T  15480006 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacatattttttttaaagac--cgatgttctatt 15480103  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||| ||          |||||||||||| || |||||||||||||||||| | ||||| |||||||||||||||    
T  15480104 tatattttttaaaagataaatacaagatgtcgtatatatgcggtacacccagaggtgaaaatgactaccgtatgcatgaggaacccccacctaacac 15480200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 674 - 887
Target Start/End: Complemental strand, 30854516 - 30854292
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    |||| |||||||||| | |||| |||||||||||| ||| |||||||| || |||| |||||||| ||||||||||||| |         ||||| ||||    
T  30854516 aacacggccgtccctgataatttggaggctcggctctgggaatgaaaaaaggtcagcgataaaattaaaacgtatttttttttaaaagagcaatgttcta 30854417  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          ||||||||| || || |||||||||||| ||||||| ||||| |||||||||||||| |    
T  30854416 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacactcagaggtgaaaatgactatcgtatacatgaggaacccccacctaacacc 30854317  T
Q  863 aaaagcagaggatctaattctaata 887  Q
    ||||  |||||| ||||||||||||    
T  30854316 aaaataagaggaactaattctaata 30854292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 36187795 - 36187990
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| |         | ||| ||||||    
T  36187795 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgt-tttttttttaaaagagcgatgttctatt 36187893  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||| ||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||  ||| |||||||||||    
T  36187894 tatattttttaaaatataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgagaaacctccacctaacac 36187990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 684 - 890
Target Start/End: Original strand, 40389461 - 40389677
Alignment:
Q  684 tccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatttt 783  Q
    ||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||||    | ||||| |         ||||| ||||||||||||||    
T  40389461 tccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaatcaatt--ttttttttttttttaaagcaatgttctatttatatttt 40389558  T
Q  784 ttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac-aaaagc-aga 871  Q
    |||||||||||||||||||||          |||||||| |||||| ||||||||||||||||||   ||||| ||||||||||||||| |||||| |||    
T  40389559 ttaaaagataaatataaggtgtcgtatatatgcggtacatccaaaggtgaaaatgactaccgtatttatgaggaacccccacctaacactaaaagcaaga 40389658  T
Q  872 ggatctaattctaataggc 890  Q
    ||| |||||||||||||||    
T  40389659 ggacctaattctaataggc 40389677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 681 - 862
Target Start/End: Complemental strand, 2275070 - 2274879
Alignment:
Q  681 ccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatat 780  Q
    |||||||| ||||||||||||||||| | ||| |||||||||||  |||||||||||||||||||||||||| |         | ||| |||||||||||    
T  2275070 ccgtccctgagaattcggaggctcggttctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttttaaaagagcgatgttctatttatat 2274971  T
Q  781 tttttaaaagataaatataaggt----------ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||| |||||           || ||||||||| || ||||||||||||||||||||  |||| |||||||||||||||    
T  2274970 tttttaaaagataaatacaaggtatcgtatatatgcagtacacccagaggtgaaaatgactaccgtatacacgaggaacccccacctaacac 2274879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 676 - 804
Target Start/End: Original strand, 31194528 - 31194655
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| | ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| | |         ||||| ||||||    
T  31194528 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacgtatttct-tttaaaagagcaatgttctatt 31194626  T
Q  776 tatattttttaaaagataaatataaggtg 804  Q
    |||||||||||||||||||||| ||||||    
T  31194627 tatattttttaaaagataaatacaaggtg 31194655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 356 - 450
Target Start/End: Complemental strand, 12645474 - 12645380
Alignment:
Q  356 tataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||||  ||||||||||||||||| |||||||||| |||||| |||||||||  ||| |||||||||| |||||||||||| ||||||    
T  12645474 tataagcaaaaaaatactttttaagttcattgaatacataatgtatttggtctatatataaaccgaatacattaaatattgaatgaatctaaaaa 12645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 16591990 - 16592212
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||| | |||||| |||||||||||| ||  |||||||||||  || ||||||||||||||| ||||||| |         ||||| ||||||    
T  16591990 cagggccgtccttgagaatttggaggctcggctctgagaatgaaaagaggccaatgataaaatcaaaacatattttttttaaaagag-caatgttctatt 16592088  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||| ||||||||||||| | ||||          |||||||||||| || |||||||||||||||||||  ||||| |||||||||||||| |||    
T  16592089 tatattttctaaaagataaatacagggtgtcgtatatatgcggtacacccagaggtgaaaatgactaccgtatatatgaggaacccccacctaacaccaa 16592188  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  16592189 aatcaagaggaactaattctaata 16592212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 356 - 450
Target Start/End: Complemental strand, 17768133 - 17768041
Alignment:
Q  356 tataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||||  || |||||| ||||||| |||||||||| |||||| |||||||||  |||||||||||||| |||||||||||| ||||||    
T  17768133 tataagcaaaaaattattttttaggttcattgaatacataatgtatttggtctatatat--accaaatacattaaatattgaatgaatctaaaaa 17768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 676 - 845
Target Start/End: Original strand, 22986473 - 22986652
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||| | ||||||||||||||| ||| ||  |||||||||||  ||||||||||||||||||||| |||| |         ||||| ||||||    
T  22986473 cagggccgtccgtgagaattcggaggctcagctctgagaatgaaaagaggccagtgataaaatcaaaacgtaattttttttaaaagagcaatgttctatt 22986572  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgag 845  Q
     ||||||||||||||| ||||| || |||          |||||||||||| || |||||||||||||||||||| ||||    
T  22986573 aatattttttaaaagacaaatacaaagtgtcgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgag 22986652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 676 - 752
Target Start/End: Original strand, 23283943 - 23284019
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||| ||||||| ||||||| | ||| | |||||||||||  ||||||||||||||||||||||||||    
T  23283943 cagggccgtccctgagaattcagaggctcagttttaggaatgaaaagaggccagtgataaaatcaaaacgtattttt 23284019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 13541921 - 13542020
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||| |||||  || |||||| ||||||| || |||||||  ||||||||| |||||| ||||||||||||| ||||||||| ||| ||||||    
T  13541921 atatttataagtaaaaagatattttttaggttcattgaaaacataatgcatttgatctctatattaaccaaatacattaggtattgaataaatctaaaaa 13542020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 690 - 804
Target Start/End: Complemental strand, 7338170 - 7338056
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaa 789  Q
    |||||| |||||||||||| | | ||||||||||| |||  |||||||||||||||| ||||| |         ||||| ||||||||||||||||||||    
T  7338170 agaatttggaggctcggctctaggaatgaaaagaggtcaaggataaaatcaaaacgttttttttttttaaagagcaatgttctatttatattttttaaaa 7338071  T
Q  790 gataaatataaggtg 804  Q
    |||||||| ||||||    
T  7338070 gataaatacaaggtg 7338056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 805 - 853
Target Start/End: Original strand, 23284116 - 23284164
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgaggtaccccc 853  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  23284116 gcggtacacccaaagatgaaaatgactaccgtatacatgaggaaccccc 23284164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 19087789 - 19087887
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||  || ||||||  |||||| ||||| |||| |||||| || |||||| |||||||||||||| ||||| ||||||  |||||||    
T  19087789 atttataagcaaaaaaatattttttatattcattgaatacttaatgtatttgttcaatatatagaccaaatacattatgtattcaatgaacctaaaaag 19087887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 797
Target Start/End: Original strand, 31881348 - 31881470
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacg-tatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| | ||||  ||||||||||| ||| ||||||||| | ||||| |||||||||||||| | ||||| |         ||||| |||||    
T  31881348 cagggccgtccctgaaaatttagaggctcggctctgggaatgaaaagtggtcagtaataaaatcaaaacgttttttttttttaaaagagcaatgttctat 31881447  T
Q  775 ttatattttttaaaagataaata 797  Q
    |||||||||||||||||||||||    
T  31881448 ttatattttttaaaagataaata 31881470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 13391658 - 13391561
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatat-attgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||||||||||||  |||||||| ||||||| |||| || || |||||  ||||||| ||||||||||||||| |  |||||||||||| |||||||    
T  13391658 ttataagcaaaaatcaactttttaggttcattcaataaattatgtatttagtctatattattgaccaaatacatcatttattgaatgaatctaaaaag 13391561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 435
Target Start/End: Complemental strand, 30920125 - 30920041
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtatt 435  Q
    ||||||||||| |||||||| |||||||  |||||||||||| |||| |||||| |||| |||| ||  |||||||||| |||||    
T  30920125 atatttataagtaaaaatgtcctttttagattcattaaatacctaatgtatttggtctacatatagaataaatacattatgtatt 30920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 30920037 - 30920104
Alignment:
Q  384 attaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||| |||||  ||||||| | |||||||||||||| ||||| ||||||| |||||||    
T  30920037 attaaatacataatgtatttattctatatgtagaccaaatacattaggtatttaatgaatctaaaaag 30920104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 38244097 - 38244195
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||| ||||||| |  |||||||||| ||| |||||||||| ||||||  |||||||| || |||||||||||  | || ||||||| |||||||    
T  38244097 atttataaacaaaaatatgttttttaagtttattgaatacataatgtatttggactatatatagatcaaatacattagatgttcaatgaatctaaaaag 38244195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 27585466 - 27585503
Alignment:
Q  7 aaaaacattccaattttatattatattctgcaatgaat 44  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27585466 aaaaacattccaattttatattatattctacaatgaat 27585503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 13654635 - 13654539
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||||||||||||  ||||||||| |||||| |||| || || |||||  ||||||||| ||||| |||||| |  |||||||||||  |||||||    
T  13654635 ttataagcaaaaattcactttttaaattcattcaataaatgatgtatttagtctatatatggaccacatacatcatttattgaatgaacctaaaaag 13654539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 752
Target Start/End: Original strand, 26718865 - 26718941
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||| |||| |||| ||||||||||| | || || |||||||||| | || ||||||| |||||||||||||    
T  26718865 cagggccgttcctatgaatccggaggctcggttctgtaagtgaaaagagacccgtaataaaataaaaacgtattttt 26718941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 752
Target Start/End: Original strand, 26988609 - 26988685
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||| |||| |||| ||||||||||| | || || |||||||||| | || ||||||| |||||||||||||    
T  26988609 cagggccgttcctatgaatccggaggctcggttctgtaagtgaaaagagacccgtaataaaataaaaacgtattttt 26988685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 12645363 - 12645458
Alignment:
Q  356 tataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||||||||||  || ||||||  |||||| ||||  |||| |||| | | ||||||| |||||||||||||| ||||| |||||| ||||||||    
T  12645363 tataagcaaaaaaatattttttagattcattcaatatttaatgtattcggtttatatatagaccaaatacattatgtattcaatgaacttaaaaag 12645458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 450
Target Start/End: Complemental strand, 38244216 - 38244117
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||| |||||  || |||||||  |||||| || |  |||| |||||||||||||||| | |||||||||||| ||||| ||| || |||||||    
T  38244216 atatttataaacaaaagagtgctttttagattcattgaacatctaatgtatttgatctatatatagtccaaatacattatgtattcaataaacttaaaaa 38244117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 3e-66; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 668 - 890
Target Start/End: Complemental strand, 25010619 - 25010392
Alignment:
Q  668 tatataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt-atnnnnnnnntcaa 766  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||| |          |||    
T  25010619 tatatatacagggccgtccctaagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacgtattttttaaaaaaaaaagcaa 25010520  T
Q  767 tgatctatttatatttttt--aaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||    
T  25010519 tgatctatttatattttttttaaaagataaatataaggtggcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacca 25010420  T
Q  864 aaagc-agaggatctaattctaataggc 890  Q
    ||||| |||||| |||||||||||||||    
T  25010419 aaagcaagaggacctaattctaataggc 25010392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 675 - 890
Target Start/End: Original strand, 20091196 - 20091424
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta-tttttatnnnnnnnntcaatgatcta 773  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||||||| ||||| |         ||||||||||    
T  20091196 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgtatttttttttaaaaaaaacaatgatcta 20091295  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |    
T  20091296 tttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacc 20091395  T
Q  863 aaaag-cagaggatctaattctaataggc 890  Q
    |||||  |||||| |||||||||||||||    
T  20091396 aaaagtaagaggacctaattctaataggc 20091424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 669 - 890
Target Start/End: Original strand, 23550981 - 23551214
Alignment:
Q  669 atataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatg 768  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||  |||||||||||  |||||||||||||||||| ||||||| |         |||||    
T  23550981 atataatcagggtcgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacatattttt-ttaaaaaaagcaatg 23551079  T
Q  769 atctatttata-ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacct 857  Q
    ||||||||||| |||||||||||||||||||||||||          |||||||| |||||| |||||||||||||||||||| ||||| ||||||||||    
T  23551080 atctatttatatttttttaaaagataaatataaggtgtcgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacct 23551179  T
Q  858 aaca-caaaagc-agaggatctaattctaataggc 890  Q
    |||| ||||||| |||||| |||||||||||||||    
T  23551180 aacaccaaaagcaagaggacctaattctaataggc 23551214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 674 - 887
Target Start/End: Original strand, 8171455 - 8171679
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    |||| |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| |         ||||| ||||    
T  8171455 aacaaggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaagcgtattttt-tttaaaagagcaatgttcta 8171553  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |    
T  8171554 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacacc 8171653  T
Q  863 aaaagc-agaggatctaattctaata 887  Q
    |||| | |||||| ||||||||||||    
T  8171654 aaaatcaagaggaactaattctaata 8171679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 673 - 890
Target Start/End: Original strand, 10329324 - 10329553
Alignment:
Q  673 aaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatct 772  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| |||    
T  10329324 aaacagggccgttcctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttaaaaaaaagcaatgttct 10329423  T
Q  773 atttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca- 861  Q
    ||||||||||||||||||||||||||||||||          | || | |||||||| |||||||||||||||||||| ||||  |||||||| |||||     
T  10329424 atttatattttttaaaagataaatataaggtgccgtatatatgaggaaaacccaaaggtgaaaatgactaccgtatacatgagaaacccccacttaacac 10329523  T
Q  862 caaaagc-agaggatctaattctaataggc 890  Q
    ||||||| |||||| |||||||||||||||    
T  10329524 caaaagcaagaggacctaattctaataggc 10329553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 38414793 - 38415019
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||||  ||| ||||||||||||||||||||| |         ||| | ||||||    
T  38414793 cagggtcgtccctaagaattcggaggctcgactctggaaatgaaaagagactagtcataaaatcaaaacgtatttttttgcaaaagagcaacgttctatt 38414892  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    | |||||||||||||||||||||||||||          | ||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||    
T  38414893 tgtattttttaaaagataaatataaggtgacgtatatatgtggtacacccaaaggtgaaaatgactactgtatacatgaggaacccccacctaacaccaa 38414992  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  38414993 aagcaagaggacctaattctaataggc 38415019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 669 - 890
Target Start/End: Complemental strand, 19692286 - 19692053
Alignment:
Q  669 atataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatg 768  Q
    |||||| ||||||| |||||||||||||||| |||||||| ||||||||||||| |  |||||||||||||||||||||||||| |         |||||    
T  19692286 atataaccagggccctccctaagaattcggaagctcggctctggaaatgaaaagtgtccagtgataaaatcaaaacgtatttttttttaaaagagcaatg 19692187  T
Q  769 atctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccaccta 858  Q
     |||||||||||||||||||||||||||||||||||          |||||||||| |||| |||||||||||  ||||||| ||||| |||| | ||||    
T  19692186 ttctatttatattttttaaaagataaatataaggtgccatatatatgcggtacacctaaaggtgaaaatgactttcgtatacatgaggaaccctcgccta 19692087  T
Q  859 aca-caaaagc-agaggatctaattctaataggc 890  Q
    ||| ||||||| |||||| |||||||||||||||    
T  19692086 acaccaaaagcaagaggacctaattctaataggc 19692053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 676 - 885
Target Start/End: Complemental strand, 29077404 - 29077184
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||||    
T  29077404 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctatt 29077306  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||| | || |||||||||||||||||||| ||||| |||||||||||||| |||    
T  29077305 tatattttttaaaagataaatacaaggtgtcgtatatatgcggtacaccaagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 29077206  T
Q  865 aagc-agaggatctaattctaa 885  Q
    || | |||||| ||||||||||    
T  29077205 aatcaagaggaactaattctaa 29077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 24525599 - 24525825
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta---tttttatnnnnnnnntcaatgatct 772  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||  | |||||||||||||||||||   ||||| |         ||||| |||    
T  24525599 cagggtcgtccctaagaattcggaggctcggctctgggaatgaaaagaggcctgtgataaaatcaaaacgtattttttttttttttaaaaacaatgttct 24525698  T
Q  773 atttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca- 861  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||     
T  24525699 atttatattttttaaaagataaatataaggtgccgtgtatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacccccacctaacac 24525798  T
Q  862 caaaagc-agaggatctaattctaata 887  Q
    ||||||| |||||| ||||||||||||    
T  24525799 caaaagcaagaggacctaattctaata 24525825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 18776683 - 18776906
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  || |||| |         ||||| ||||||    
T  18776683 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaatataattttttttaaaagagcaatgttctatt 18776782  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac--a 863  Q
    |||||||||||||||||||||| ||||||          |||||||||||| |  |||||||||||||||||||| ||||  |||||||||||||||  |    
T  18776783 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagatgtgaaaatgactaccgtatacatgagaaacccccacctaacaccaa 18776882  T
Q  864 aaagcagaggatctaattctaata 887  Q
    |||  |||||| ||||||||||||    
T  18776883 aaacaagaggaactaattctaata 18776906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 48983756 - 48983987
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta-----tttttatnnnnnnnntcaatgat 770  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||  || ||||||||||||||||||     ||||| |         |||||||    
T  48983756 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccaatgataaaatcaaaacgtatttttttttttttaaaaaaaacaatgat 48983855  T
Q  771 ctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac 860  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||    
T  48983856 ctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaataactaccgtatacatgaggaacccccacctaac 48983955  T
Q  861 a-caaaag-cagaggatctaattctaataggc 890  Q
    | ||||||  ||||||  ||||||||||||||    
T  48983956 accaaaagtaagaggacttaattctaataggc 48983987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 47984885 - 47985113
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnnt-caatgatctat 774  Q
    ||||||||||||||||||||||  ||||||||| ||| ||||||||||   |||||||||||||||||||| ||||| |          ||||| |||||    
T  47984885 cagggccgtccctaagaattcgttggctcggctctgggaatgaaaagatgccagtgataaaatcaaaacgtgttttttttttaaaaaagcaatgttctat 47984984  T
Q  775 ttatatttttt-aaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac- 862  Q
    ||||||||||| |||||| ||||||||||||          ||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||     
T  47984985 ttatatttttttaaaagaaaaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgaccaccgtatacatgaggaacccccacctaacaca 47985084  T
Q  863 aaaagc-agaggatctaattctaataggc 890  Q
    |||||| |||||| |||||||||||||||    
T  47985085 aaaagcaagaggacctaattctaataggc 47985113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 676 - 804
Target Start/End: Complemental strand, 26254178 - 26254050
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |         ||||| ||||||    
T  26254178 cagggctgtccctgagaattcggaggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaacatatttttttttaaaagagcaatgttctatt 26254079  T
Q  776 tatattttttaaaagataaatataaggtg 804  Q
    |||||||||||||||||||||| ||||||    
T  26254078 tatattttttaaaagataaatacaaggtg 26254050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 35274541 - 35274451
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  35274541 atttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 35274451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 12596207 - 12596400
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||| |         | ||| ||||||    
T  12596207 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtttttttttaaagag---cgatgttctatt 12596303  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||| ||||||||||| ||||||          | |||||||||| || |||||||||||||||||| | ||||| |||||||||||||||    
T  12596304 tatatttttttaaagataaatacaaggtgccgtatatatgtggtacacccagaggtgaaaatgactaccgtatgcatgaggaacccccacctaacac 12596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 353 - 448
Target Start/End: Complemental strand, 12423774 - 12423679
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaa 448  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||| |||||||||| |||  |||||||||||| ||||    
T  12423774 atttataagcaaaaatgtactttttaggttcattgaatacataatgtatttgacctatatatagaccaaatacgttagatattgaatgaatctaaa 12423679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 678 - 890
Target Start/End: Complemental strand, 8239869 - 8239644
Alignment:
Q  678 gggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctattta 777  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||  || ||||||||| ||||||||||||| |        | |||| ||||||||    
T  8239869 gggccgtccctaagaatttggaggctcggctctggaaatgaaaagaggccaatgataaaatgaaaacgtattttttttaaaagagt-aatgttctattta 8239771  T
Q  778 tattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtaccc--ccacctaaca-caa 864  Q
    |||||||||||| |||||||||| |||          | ||||||||||||  ||||||||| |||||||||  ||||| ||||  |||| ||||| |||    
T  8239770 tattttttaaaaaataaatataatgtgccgtatatatgtggtacacccaaatgtgaaaatgattaccgtatatatgaggaacccctccacttaacaccaa 8239671  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  8239670 aagcaagaggacctaattctaataggc 8239644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 676 - 752
Target Start/End: Complemental strand, 28749895 - 28749819
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||| | ||||||||||||||||| ||| |||||||||||| || ||||||||||||||| |||||||    
T  28749895 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccaatgataaaatcaaaacatattttt 28749819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 770 - 862
Target Start/End: Complemental strand, 10955575 - 10955473
Alignment:
Q  770 tctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaa 859  Q
    |||||||||||||||||||||||||||||||||||          ||||||||| || || |||||||||||||||||||| ||||| ||||||||||||    
T  10955575 tctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacactcagaggtgaaaatgactaccgtatacatgaggaacccccacctaa 10955476  T
Q  860 cac 862  Q
    |||    
T  10955475 cac 10955473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 690 - 752
Target Start/End: Original strand, 40357311 - 40357373
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  40357311 agaattcggaggctcggctctggaaatgaaaaaaggtcagtgataaaatcaaaacgtagtttt 40357373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 47877873 - 47877934
Alignment:
Q  343 ttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttg 404  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  47877873 ttccggttatatttataaacaaaaatgtactttttaagtttattgaatacataatatatttg 47877934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 28038557 - 28038609
Alignment:
Q  399 tatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  28038557 tatttggtctatatattgaccaaatacattaagtattgaatgaatctaaaaag 28038609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 677 - 804
Target Start/End: Original strand, 33162257 - 33162384
Alignment:
Q  677 agggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctattt 776  Q
    |||||| | |||||||||||||||  |||| | ||| | ||||||||| ||| ||||||||| ||||||||||||| |         ||||| |||||||    
T  33162257 agggccattcctaagaattcggagattcggttctgggagtgaaaagaggtcaatgataaaattaaaacgtattttttttttaaagagcaatgctctattt 33162356  T
Q  777 atattttttaaaagataaatataaggtg 804  Q
    ||||||||||||||||||||| ||||||    
T  33162357 atattttttaaaagataaatacaaggtg 33162384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 28038475 - 28038553
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaa 422  Q
    |||||| | ||||||||||||||||||| |||||| || |||| |||||||||| ||| || |||||||||||||||||    
T  28038475 tccgatcacatttataagcaaaaatgtattttttaggtacattgaatacataatgtatctggtctatatattgaccaaa 28038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 48634205 - 48634285
Alignment:
Q  370 tactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||  |||||| |||||||||| |||||| ||||||||| ||  ||||||||||| |||||||||||| ||||||    
T  48634205 tactttttagattcattgaatacataatgtatttggtctatatatagattaaatacattaaatattgaatgaatctaaaaa 48634285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 35725920 - 35725985
Alignment:
Q  377 taagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaa 442  Q
    |||||| ||| ||| |||||| |||||||||||| ||| ||||||||||||||| |||||||||||    
T  35725920 taagtttattgaatgcataatgtatttgatctatttatcgaccaaatacattaaatattgaatgaa 35725985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 356 - 451
Target Start/End: Complemental strand, 48634302 - 48634207
Alignment:
Q  356 tataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||||||||||  |  ||||||  |||||| ||||  |||| ||||| |||||||||| |||||||||||||| ||||| ||||||| |||||||    
T  48634302 tataagcaaaaaaatgatttttagattcattcaatatttaatgtatttaatctatatatagaccaaatacattatgtattcaatgaatctaaaaag 48634207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 797
Target Start/End: Original strand, 12419413 - 12419533
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||| |||| |||| |||||||||||||||| || |||||||||  | || ||||||| | ||||||||||| |         ||||| ||||||    
T  12419413 cagggccgttcctatgaatccggaggctcggctttgtaagtgaaaagaggcccgtaataaaataacaacgtattttt-tttaaaagaacaatgttctatt 12419511  T
Q  776 tatattttttaaaagataaata 797  Q
    || |||||||||||||||||||    
T  12419512 taaattttttaaaagataaata 12419533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 442
Target Start/End: Complemental strand, 34427635 - 34427546
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaa 442  Q
    |||||||||||||||   | |||||||||||||| ||||  |||||||| ||| |||||||| |||  |||||||||  |||||||||||    
T  34427635 atttataagcaaaaagtaattttttaagttcattcaataactaatatatctgacctatatatagactgaatacattatttattgaatgaa 34427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 28038637 - 28038553
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacatt 428  Q
    |||| ||| |||||||||||||||   ||||||||  |||||| ||||| |||| |||||| || |||||| |||||||||||||    
T  28038637 tccggttacatttataagcaaaaaaacactttttagattcattcaatacttaatgtatttggtcaatatatagaccaaatacatt 28038553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 35274424 - 35274522
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||   |||||||   |||||| ||||  |||| |||||| || |||||| |||||||||||||| ||||| ||||||  |||||||    
T  35274424 atttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaag 35274522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 48873016 - 48873050
Alignment:
Q  416 gaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||||||| |||||||||||||||||||    
T  48873016 gaccaaatacattaattattgaatgaatttaaaaa 48873050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 805 - 846
Target Start/End: Original strand, 9021856 - 9021897
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgagg 846  Q
    ||||||||||||||| ||||||| |||||||||||| |||||    
T  9021856 gcggtacacccaaaggtgaaaatcactaccgtatacatgagg 9021897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 12274936 - 12274879
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatat 412  Q
    ||||||||||||||||||||||||  |||||| |||| ||||| ||| || |||||||    
T  12274936 ttataagcaaaaatgtactttttagattcattcaatatataatgtatgtggtctatat 12274879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 846
Target Start/End: Complemental strand, 23859115 - 23859078
Alignment:
Q  809 tacacccaaagatgaaaatgactaccgtatacctgagg 846  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  23859115 tacacccaaagatgaaaattactaccgtatacatgagg 23859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 751
Target Start/End: Complemental strand, 23859259 - 23859182
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttt 751  Q
    |||||| |||| |||| ||||| ||||||||| || || || |||||||||| | || ||||||| ||||||||||||    
T  23859259 aacaggtccgttcctacgaatttggaggctcgactctgtaagtgaaaagagacctgtaataaaataaaaacgtatttt 23859182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 448
Target Start/End: Original strand, 39751074 - 39751171
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaa 448  Q
    ||||||||||| |||||   ||||||||  |||||||||||  |||| ||| || |||||||||||   ||||||||||  |||| ||||||||||||    
T  39751074 atatttataagtaaaaaacaactttttagattcattaaatatctaatgtatatggtctatatattggtaaaatacattagttattcaatgaatttaaa 39751171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 4e-65; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 682 - 890
Target Start/End: Original strand, 38352189 - 38352398
Alignment:
Q  682 cgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatt 781  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |||||||||||||||||    
T  38352189 cgtccctaagaattcggaggctcggctctgggaatgaaaagagatcagtgataaaatcaaaacgtatttttttttaaaaagt-aatgatctatttatatt 38352287  T
Q  782 ttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaa 879  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||| ||||||| ||| || ||||    
T  38352288 ttttaaaagataaatataaggtggcggtacacccaaaggtgaaaatgactaccgtgtacatgaggaacccccacctaacaccaaaagcaagatgacctaa 38352387  T
Q  880 ttctaataggc 890  Q
    |||||||||||    
T  38352388 ttctaataggc 38352398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 764 - 890
Target Start/End: Complemental strand, 24969529 - 24969401
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |    
T  24969529 caatgatctatttatattttttaaaagataaatataaggtggcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacc 24969430  T
Q  863 aaaagc-agaggatctaattctaataggc 890  Q
    |||||| ||||||||||||||||||||||    
T  24969429 aaaagcaagaggatctaattctaataggc 24969401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 34027768 - 34027543
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| ||||||    
T  34027768 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttt-ttaaaaaaagcaatgttctatt 34027670  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| |||    
T  34027669 tatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactacggtatacatgaggaacccccacctaacaccaa 34027570  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  34027569 aagcaagaggacctaattctaataggc 34027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 54083160 - 54083385
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||||||||| |         ||||||||||||    
T  54083160 cagggccgtccctaaaaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacgtattttt-ttaaaaaaaacaatgatctatt 54083258  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||| |||    
T  54083259 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaagataaaaatgactaccgtatacatgaggaacccctacctaacaccaa 54083358  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  54083359 aagcaagaggacctaattctaataggc 54083385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 32128774 - 32128548
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||| || ||||||||||||||||||||||||||| |         ||||| ||||||    
T  32128774 cagggccgtccctaagaatttggaggctcggctctgggaatgaaaaaaggtcagtgataaaatcaaaacgtatttttttttaaaagagcaatgttctatt 32128675  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| | ||  |||||||||||||| |||    
T  32128674 tatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacataagaaacccccacctaacaccaa 32128575  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  32128574 aagcaagaggacctaattctaataggc 32128548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 2790659 - 2790884
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| | ||||| |         ||||| ||||||    
T  2790659 cagggccgtctctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacat-tttttttttaaaagaacaatgttctatt 2790757  T
Q  776 tatattttttaaaagataaatataaggt----------ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaa-cacaa 864  Q
    ||||||||||||||||||||||||||||           ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||   |||    
T  2790758 tatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaatggcaa 2790857  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  2790858 aagcaagaggacctaattctaataggc 2790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 37777140 - 37777366
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||| |||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||            |||| ||||||    
T  37777140 cagggctgtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtattttttaaaaaaaaagtaatgttctatt 37777239  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||| || |||||| |||    
T  37777240 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccctcaactaacaccaa 37777339  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  37777340 aagcaagatgacctaattctaataggc 37777366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 55255447 - 55255236
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||  |||||||||||||||||| || |||| |         ||||| || |||    
T  55255447 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttccatt 55255348  T
Q  776 tatattttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agagg 873  Q
    |||||||||||||||||||||| |||||| ||   |||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||    
T  55255347 tatattttttaaaagataaatacaaggtgccgc--cacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagagg 55255250  T
Q  874 atctaattctaata 887  Q
    | ||||||||||||    
T  55255249 aactaattctaata 55255236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 675 - 890
Target Start/End: Complemental strand, 16845211 - 16844985
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||| |         ||||| |||||    
T  16845211 acagggccgtccctaagaattcggaggctcggctctggaaatgaaaaaag-ccagtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctat 16845114  T
Q  775 ttata-ttttttaaaagataaatataaggtggcg----------gtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    ||||| ||||||||||||||||||||||||| ||          |||||||||| | |||||||||||||||||||| ||||| |||||||||||||| |    
T  16845113 ttatatttttttaaaagataaatataaggtgtcgtatatatgtagtacacccaacggtgaaaatgactaccgtatacatgaggaacccccacctaacacc 16845014  T
Q  863 aaaagc-agaggatctaattctaataggc 890  Q
    |||||| ||| || |||||||||||||||    
T  16845013 aaaagcaagatgacctaattctaataggc 16844985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 19498691 - 19498468
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||| |||||||||||||||||||||| | | |||||||| ||  || ||||||||||||||||||||||  |         ||||| ||||||    
T  19498691 cagggccgtcactaagaattcggaggctcggctctaggaatgaaaacaggccaatgataaaatcaaaacgtattttgtttaaaagag-caatgttctatt 19498593  T
Q  776 tatattttttaaaagataaatataaggtg--------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaa 866  Q
    |||||||||||||||||||||||||||||        |||||||| |||||| ||||||||||||| |||||| ||||| |||||||||||||| |||||    
T  19498592 tatattttttaaaagataaatataaggtgccgtatatgcggtacagccaaaggtgaaaatgactactgtatacatgaggaacccccacctaacaccaaaa 19498493  T
Q  867 gc-agaggatctaattctaataggc 890  Q
    || |||||| |||||||||||||||    
T  19498492 gcaagaggacctaattctaataggc 19498468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 675 - 862
Target Start/End: Complemental strand, 54780969 - 54780771
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat-ttttatnnnnnnnntcaatgatcta 773  Q
    |||||||||||||| |||||||||||||| |||| ||| |||||||||||  |||||||||||||||||||||| |||| |         ||||| ||||    
T  54780969 acagggccgtccctgagaattcggaggcttggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttaaaagagcaatgttcta 54780870  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||||| ||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  54780869 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 54780771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 687 - 862
Target Start/End: Original strand, 43455460 - 43455644
Alignment:
Q  687 ctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatttttta 786  Q
    ||||||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||| || |         ||||| |||||||||||||||||    
T  43455460 ctaagaattcggaggctcgactctgggaatgaaaagaggtcagtgataaaatcaaaacgtattatt-tttaaaagagcaatgttctatttatatttttta 43455558  T
Q  787 aaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  43455559 aaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 43455644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 34768492 - 34768714
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||   ||||||||||||||||| ||||||| |         ||||| ||||||    
T  34768492 cagggtcgtccctgagaattcggaggctcggctttgggaatgaaaagaggctagtgataaaatcaaaacatattttt-tttaaaagagcaatgttctatt 34768590  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          |||||||||||| || ||||||||| |||||||||| ||||| |||||||||||||| |||    
T  34768591 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccagaggtgaaaatgattaccgtatacatgaggaacccccacctaacaccaa 34768690  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  34768691 aatcaagaggaactaattctaata 34768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 680 - 887
Target Start/End: Complemental strand, 47129172 - 47128954
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||| |||||||| |         ||||| ||||||||||    
T  47129172 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaatgtattttt-tttaaaagaacaatgttctatttata 47129074  T
Q  780 ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc 868  Q
    |||||||||||||||||| ||||||          |||||||||||| || | |||||||||||||||||| ||||| |||||||||||||| ||||| |    
T  47129073 ttttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatc 47128974  T
Q  869 -agaggatctaattctaata 887  Q
     |||||| ||||||||||||    
T  47128973 aagaggaactaattctaata 47128954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 16882313 - 16882538
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||  ||||||||||||||||||||||||||| |         ||||| ||||||    
T  16882313 cagggccgtccctaagaattcggaggctcggctctaggaatgaaaagaagtcagtgataaaatcaaaacgtattttt-ttaaaaaaaacaatgttctatt 16882411  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||| ||||||||||||||||||||||||           ||||||||| |||| ||||||||||||||||||   || || |||| ||||||||| |||    
T  16882412 tatactttttaaaagataaatataaggtgccgtgtatatacggtacaccaaaaggtgaaaatgactaccgtatgtatggggaaccctcacctaacaccaa 16882511  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  16882512 aagcaagaggacctaattctaataggc 16882538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 51313469 - 51313576
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| | |||||||| |||||||||||||||||  |||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  51313469 tccgatcacatttataaacaaaaatgtactttttagcttcattgaatacataatgtatttagtctatatattgaccaaatacattaagtattgaatgaat 51313568  T
Q  444 ttaaaaag 451  Q
     |||||||    
T  51313569 ctaaaaag 51313576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 690 - 887
Target Start/End: Original strand, 38209522 - 38209731
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaa 789  Q
    |||||| |||||||||||| |||||||||||||||  |||||||||||||||||  || |||| |         ||||| ||||||||||||||||||||    
T  38209522 agaatttggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaatataatttttttttaaagagcaatgttctatttatattttttaaaa 38209621  T
Q  790 gataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatct 877  Q
    |||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||| ||    
T  38209622 gataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagaggaact 38209721  T
Q  878 aattctaata 887  Q
    ||||||||||    
T  38209722 aattctaata 38209731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 675 - 890
Target Start/End: Complemental strand, 40089715 - 40089480
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    |||||| ||||||||||||||||||||||||||| | | ||||||||||  ||||||||||||||||||||||||||| |         ||||| | |||    
T  40089715 acagggtcgtccctaagaattcggaggctcggctcttggaatgaaaagaagtcagtgataaaatcaaaacgtattttt-tttaaaaaagcaatgttttat 40089617  T
Q  775 ttatat---------tttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccac 855  Q
    ||||||         ||||||||||||||||||||||||          |||||||| |||||| |||||||||||||||||||| ||||| ||||||||    
T  40089616 ttatatttatttatatttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccac 40089517  T
Q  856 ctaaca-caaaagc-agaggatctaattctaataggc 890  Q
    |||||| ||||||| |||||| |||||||||||||||    
T  40089516 ctaacaccaaaagcaagaggacctaattctaataggc 40089480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 674 - 862
Target Start/End: Complemental strand, 32915577 - 32915379
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||  ||||| |         | ||| ||||    
T  32915577 aacagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacggttttttttttaaaagagcgatgttcta 32915478  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||||| ||||||          | |||||||||| || | ||||||| |||||||||| ||||| |||||||||||||||    
T  32915477 tttatattttttaaaagataaatacaaggtgccgtatatatgtggtacacccagaggtaaaaatgattaccgtatacatgaggaacccccacctaacac 32915379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 2091477 - 2091379
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||| ||||||| || |||||| ||| ||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2091477 atttataaacaaaaatatattttttaggttaattgaatacataatgtatttggtctatttattgaccaaatacattaagtattgaatgaatttaaaaag 2091379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 10979092 - 10978867
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnnt--caatgatcta 773  Q
    |||||||||| || |||||||||||| |  ||| ||| ||||||||||| | ||||||||||||||||||||||||| |           ||||| ||||    
T  10979092 cagggccgtctctgagaattcggaggtttagctctgggaatgaaaagaggttagtgataaaatcaaaacgtatttttttttttaaaagagcaatgttcta 10978993  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||||| |  |||||||||||||||||||| ||||| |||||||||||||| |    
T  10978992 tttatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccagaagtgaaaatgactaccgtatacatgaggaacccccacctaacacc 10978893  T
Q  863 aaaagc-agaggatctaattctaata 887  Q
    |||| | |||||| ||||||||||||    
T  10978892 aaaatcaagaggaactaattctaata 10978867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 676 - 800
Target Start/End: Original strand, 16922245 - 16922370
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttt-tatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| |||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||| |||| | |         ||||| |||||    
T  16922245 cagggccgtccctgagaatttggaggctcgactttgggaatgaaaagagaccagtgataaaatcaaaacgttttttatttttaaaagagcaatgttctat 16922344  T
Q  775 ttatattttttaaaagataaatataa 800  Q
    ||||||||||||||||||||||||||    
T  16922345 ttatattttttaaaagataaatataa 16922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 676 - 804
Target Start/End: Complemental strand, 17679589 - 17679462
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||| || ||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||| |         ||||  ||||||    
T  17679589 cagggccgtctctgagaattcggaggctcggttctgggaatgaaaagagaccagtgataaaatcaaaacgtattttt-tttaaaagagcaatattctatt 17679491  T
Q  776 tatattttttaaaagataaatataaggtg 804  Q
    |||||||||||||||||||||| ||||||    
T  17679490 tatattttttaaaagataaatacaaggtg 17679462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 680 - 862
Target Start/End: Complemental strand, 1105717 - 1105526
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||| | ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |        |  ||| ||||||||||    
T  1105717 gccgtccttgagaattcagaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtattttttttaaaagagt-gatgttctatttata 1105619  T
Q  780 ttttttaaaagataaatataaggt----------ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||| |||||           |||||||||| | || |||||||||||||| ||||| ||||  |||||||||||||||    
T  1105618 ttttttaaaagataaatacaaggtatcgtatatatgcggtacacctagaggtgaaaatgactaccatatacatgagcaacccccacctaacac 1105526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 669 - 804
Target Start/End: Original strand, 10428109 - 10428242
Alignment:
Q  669 atataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatg 768  Q
    ||||| ||||||||||||   ||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||  ||||||| |         |||||    
T  10428109 atatacacagggccgtcctcgagaattcggaggctcggctctgggaatgaaaagaggtcagtgctaaaatcaaaatttattttttttaaaaag--caatg 10428206  T
Q  769 atctatttatattttttaaaagataaatataaggtg 804  Q
     |||||||||||||||||||||||||||| ||||||    
T  10428207 ttctatttatattttttaaaagataaatacaaggtg 10428242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 48209436 - 48209234
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtga-----taaaatcaaaacgta-tttttatnnnnnnnntcaatga 769  Q
    ||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||||     ||||||||||||||| ||||| |         |||||     
T  48209436 cagggccgtccctgagaattcggaggctcggctctgggagtgaaaagagaccagtgataaattaaaatcaaaacgtattttttttttaaaagagcaatgt 48209337  T
Q  770 tctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaa 859  Q
    |||||||||||||||||||||||||||| ||||||          |||||||||||| |  |||| ||||||||||||||| ||||  ||||||||||||    
T  48209336 tctatttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagatgtgaatatgactaccgtatacatgagaaacccccacctaa 48209237  T
Q  860 cac 862  Q
    |||    
T  48209236 cac 48209234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 692 - 804
Target Start/End: Original strand, 23508443 - 23508556
Alignment:
Q  692 aattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat-attttttaaaag 790  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||| |         ||||| ||||||||| ||||||||||||    
T  23508443 aattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaatgtattttttttttaatgagcaatgttctatttataattttttaaaag 23508542  T
Q  791 ataaatataaggtg 804  Q
    ||||||| ||||||    
T  23508543 ataaatacaaggtg 23508556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 679 - 890
Target Start/End: Original strand, 35779248 - 35779468
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    |||||||| | |||||||||||| ||| ||   | |||||||||||   ||||||||||||||||||||||||| |         ||||| |||||| ||    
T  35779248 ggccgtccttgagaattcggaggttcgactcgaggaatgaaaagaggctagtgataaaatcaaaacgtattttttttaaagag--caatgttctatt-at 35779344  T
Q  779 attttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaag 867  Q
    ||||||||||||||||||| ||||||          ||||||||||||||| ||||||||| |||||||||| ||||| |||  ||||||||| ||||||    
T  35779345 attttttaaaagataaatacaaggtgtcgtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaaccttcacctaacatcaaaag 35779444  T
Q  868 c-agaggatctaattctaataggc 890  Q
    | |||||| |||||||||||||||    
T  35779445 caagaggaactaattctaataggc 35779468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 690 - 890
Target Start/End: Complemental strand, 35465281 - 35465071
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaa 789  Q
    ||||||||||||||||  | ||| ||||||||||| ||||||||||||||||||| ||||||| |         ||||| | ||||||||||||||| ||    
T  35465281 agaattcggaggctcgattctgggaatgaaaagaggtcagtgataaaatcaaaacatattttt-tttaaaagaacaatgttatatttatattttttacaa 35465183  T
Q  790 gataaatataaggtg---------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatcta 878  Q
    |||||||| ||||||         |||||||||| |||  ||||||| |||||||||||| ||||| | |||||||||||| ||||||| | | || |||    
T  35465182 gataaataaaaggtgcgtatatatgcggtacacctaaaagtgaaaataactaccgtatacatgaggaatccccacctaacaccaaaagcaacatgaccta 35465083  T
Q  879 attctaataggc 890  Q
    ||||||||||||    
T  35465082 attctaataggc 35465071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 5128758 - 5128955
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatc-aaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| ||||||  ||||||||||| ||| |||||||||||  ||||||||||||| ||||||| ||||| |         | ||  |||||    
T  5128758 cagggccgtccctgagaatttagaggctcggctctgggaatgaaaagaggccagtgataaaatctaaaacgtttttttttttagaagagcgatattctat 5128857  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| ||||||          || || |||||| || |||||||||||||||||||| ||||| ||| |||||||||||    
T  5128858 ttatattttttaaaagataaatacaaggtgccgtatatatgcagtgcacccagaggtgaaaatgactaccgtatacatgaggaacctccacctaacac 5128955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 675 - 862
Target Start/End: Complemental strand, 37514849 - 37514653
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat-ttttatnnnnnnnntcaatgatcta 773  Q
    |||||||||||||| |||||| |||||||| ||   || |||||||||||  |||||||||||||||||||||| |||| |         | ||| ||||    
T  37514849 acagggccgtccctgagaatttggaggctcagcg--gggaatgaaaagaggccagtgataaaatcaaaacgtatttttttttttaaagagcgatgttcta 37514752  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||||| ||||||          ||||||||| || || |||||||||||||||||||| ||| | | |||||||||||||    
T  37514751 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacactcagaggtgaaaatgactaccgtatacatgaagaatccccacctaacac 37514653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 676 - 746
Target Start/End: Complemental strand, 24969786 - 24969716
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt 746  Q
    |||||||||||||||||||||||||||||| || ||| |||||||||||   |||||||||| ||||||||    
T  24969786 cagggccgtccctaagaattcggaggctcgactctgggaatgaaaagaggctagtgataaaaacaaaacgt 24969716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 770 - 887
Target Start/End: Complemental strand, 13460303 - 13460174
Alignment:
Q  770 tctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaa 859  Q
    |||||||||||||||||||||||||||| ||||||          |||||| ||||| |  |||||||||||||||||||| | ||| ||||||||||||    
T  13460303 tctatttatattttttaaaagataaatacaaggtgtcgtatatatgcggtatacccagatgtgaaaatgactaccgtatacataaggaacccccacctaa 13460204  T
Q  860 ca-caaaagc-agaggatctaattctaata 887  Q
    || ||||| | |||||| ||||||||||||    
T  13460203 caccaaaatcaagaggaactaattctaata 13460174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 32125483 - 32125377
Alignment:
Q  337 tattccttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctat-atattgaccaaatacattaagtatt 435  Q
    |||||| |||| | |||||||||||||||||| ||||||||| ||||||| ||||  |||| ||| || ||||| ||||  ||||| |||||||||||||    
T  32125483 tattccctccggtcatatttataagcaaaaatctactttttaggttcattgaatatctaatgtatgtggtctataatatataccaagtacattaagtatt 32125384  T
Q  436 gaatgaa 442  Q
     ||||||    
T  32125383 caatgaa 32125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 805 - 887
Target Start/End: Original strand, 23509854 - 23509938
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaattctaata 887  Q
    |||||||||| | || ||||||||||||||||| || ||||| |||||||||||||| ||||| | |||||| ||||||||||||    
T  23509854 gcggtacacctagaggtgaaaatgactaccgtagacatgaggaacccccacctaacaccaaaatcaagaggaactaattctaata 23509938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 804
Target Start/End: Original strand, 36118377 - 36118503
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||| |||| ||||||||| ||||||||||| || |||||||||    || ||||||| ||||||||||||| |         ||||| ||||||    
T  36118377 cagggccgttcctacgaattcggaagctcggctttgtaagtgaaaagaggctcgtaataaaataaaaacgtatttttttaaatgaa--caatgttctatt 36118474  T
Q  776 tatattttttaaaagataaatataaggtg 804  Q
    || ||||||||||||||||||| ||||||    
T  36118475 taaattttttaaaagataaatacaaggtg 36118503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 804
Target Start/End: Complemental strand, 52468459 - 52468348
Alignment:
Q  691 gaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaag 790  Q
    |||||||||||||||||| || |  ||||||||| || || ||||||| ||||||||||||| |         ||||| |||||||| ||||||||||||    
T  52468459 gaattcggaggctcggctctgtaggtgaaaagaggtctgtaataaaataaaaacgtatttttttaaaagaa--caatgttctatttaaattttttaaaag 52468362  T
Q  791 ataaatataaggtg 804  Q
    ||||||| ||||||    
T  52468361 ataaatacaaggtg 52468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 752
Target Start/End: Original strand, 2975358 - 2975418
Alignment:
Q  692 aattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    |||||| | |||||||| || |||||||||||| ||| ||||||||||||||| |||||||    
T  2975358 aattcgaatgctcggctctgaaaatgaaaagaggtcaatgataaaatcaaaacatattttt 2975418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 51964884 - 51964824
Alignment:
Q  692 aattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||| ||||||| ||| |||||||||||  |  |||||||||||||||||||||||    
T  51964884 aattcggagactcggctctgggaatgaaaagaggccgatgataaaatcaaaacgtattttt 51964824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 9578669 - 9578708
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggt 803  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  9578669 caatgttctatttatattttttaaaagataaatacaaggt 9578708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 33004180 - 33004258
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacatta 429  Q
    |||||||||||||||||   ||||||||| ||||||||||| ||||| |||||| ||  ||||| | || |||||||||    
T  33004180 atatttataagcaaaaaacaactttttaaattcattaaataaataatgtatttgctcactatataggccgaatacatta 33004258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 10428277 - 10428318
Alignment:
Q  821 tgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||| ||||| ||| |||||||||||    
T  10428277 tgaaaatgactaccgtatacatgaggaacctccacctaacac 10428318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 12074838 - 12074781
Alignment:
Q  373 tttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaa 430  Q
    |||||| |||||||  |||  ||||||||||| ||||||||| |||||||||||||||    
T  12074838 tttttaggttcattcgatatttaatatatttggtctatatatagaccaaatacattaa 12074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 804
Target Start/End: Complemental strand, 40217327 - 40217294
Alignment:
Q  771 ctatttatattttttaaaagataaatataaggtg 804  Q
    ||||||| ||||||||||||||||||||||||||    
T  40217327 ctatttaaattttttaaaagataaatataaggtg 40217294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 6e-52; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 671 - 890
Target Start/End: Original strand, 23606543 - 23606773
Alignment:
Q  671 ataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgat 770  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |         ||||| |    
T  23606543 ataatcagggccgtccctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacgtattttt-tttaaaagagcaatgtt 23606641  T
Q  771 ctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac 860  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  23606642 ctatttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaggaacccccacctaac 23606741  T
Q  861 a-caaaagc-agaggatctaattctaataggc 890  Q
    | ||||||| |||||| |||||||||||||||    
T  23606742 accaaaagcaagaggacctaattctaataggc 23606773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 42600967 - 42600741
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| ||||| |         ||||||||||||    
T  42600967 cagggccgtccctaagaattcggaggctcggctctgaaaatgaaaagaggtcagtgataaaatcaaaacgtttttttttttaaaaaagcaatgatctatt 42600868  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          | ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  42600867 tatattttttaaaagataaatataaggtgccgtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 42600768  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  42600767 aagcaagaagacctaattctaataggc 42600741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 23798179 - 23798405
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||| ||| ||||||||||||||||||| ||| |         ||||| ||||||    
T  23798179 cagggccgtccctaagaattcggaggctcggctctgggaacgaaaagaggtcaatgataaaatcaaaacgtatattttttttaaagagcaatgttctatt 23798278  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||| |||    
T  23798279 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 23798378  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  23798379 aagcaagaggacctaattctaataggc 23798405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 673 - 890
Target Start/End: Complemental strand, 10917578 - 10917350
Alignment:
Q  673 aaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatct 772  Q
    ||||||||| |||| ||||||||||||||||||||| ||  |||||||||||  |||||||||||||||||||||||||| |         |||||||||    
T  10917578 aaacagggctgtccttaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgtattttt-ttaaaaaaaacaatgatct 10917480  T
Q  773 atttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca- 861  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||     
T  10917479 atttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccttatacatgaggaacccccacctaacac 10917380  T
Q  862 caaaagc-agaggatctaattctaataggc 890  Q
    ||||||| ||| || |||||||||||||||    
T  10917379 caaaagcaagatgacctaattctaataggc 10917350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 45476001 - 45475776
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||| ||||| |||||||||||||||||||  || |||||||||||  |||||||||||||||||||||||||| |         ||||| ||||||    
T  45476001 cagggccatccctgagaattcggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacgtattttttttaaaagag-caatgttctatt 45475903  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||    
T  45475902 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 45475803  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  45475802 aagcaagaggaactaattctaataggc 45475776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 2952137 - 2952362
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta--tttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| ||  ||||| |         ||||| ||||    
T  2952137 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataatttttttttaaaaagagcaatgttcta 2952236  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| || |||          |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |    
T  2952237 tttatattttttaaaagataaatacaaagtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacacc 2952336  T
Q  863 aaaagc-agaggatctaattctaata 887  Q
    |||| | |||||| ||||||||||||    
T  2952337 aaaatcaagaggaactaattctaata 2952362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 679 - 887
Target Start/End: Complemental strand, 30883512 - 30883291
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaatgatctattta 777  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||  |||||||||||||||||| | |||||| |         ||||| ||||||||    
T  30883512 ggccgtccctgagaattcagaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataatttttttttaaaagagcaatgttctattta 30883413  T
Q  778 tattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaa 866  Q
    |||||||||||||||||||| || |||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||||    
T  30883412 tattttttaaaagataaatacaatgtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaa 30883313  T
Q  867 gc-agaggatctaattctaata 887  Q
     | |||||| ||||||||||||    
T  30883312 tcaagaggaactaattctaata 30883291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 670 - 862
Target Start/End: Original strand, 13534600 - 13534800
Alignment:
Q  670 tataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatga 769  Q
    ||||| || |||||||||| | ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         |||||     
T  13534600 tataaccacggccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttt-tttaaaagagcaatgt 13534698  T
Q  770 tctatttatattttttaaaagataaatataag----gt-----ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac 860  Q
    |||||||||||||||||||||||||||| |||    ||      |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||    
T  13534699 tctatttatattttttaaaagataaatacaagtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaac 13534798  T
Q  861 ac 862  Q
    ||    
T  13534799 ac 13534800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 670 - 862
Target Start/End: Original strand, 13624140 - 13624340
Alignment:
Q  670 tataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatga 769  Q
    ||||| || |||||||||| | ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         |||||     
T  13624140 tataaccacggccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttt-tttaaaagagcaatgt 13624238  T
Q  770 tctatttatattttttaaaagataaatataag----gt-----ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac 860  Q
    |||||||||||||||||||||||||||| |||    ||      |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||    
T  13624239 tctatttatattttttaaaagataaatacaagtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaac 13624338  T
Q  861 ac 862  Q
    ||    
T  13624339 ac 13624340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 3048435 - 3048658
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||   |||||    
T  3048435 cagggccgtctctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatatactatt 3048534  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||| | |||||||||||||||||||||||  |||| |||| ||||||||| |||    
T  3048535 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctagagatgaaaatgactaccgtatacacgaggaaccctcacctaacaccaa 3048634  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  3048635 aatcaagaggaactaattctaata 3048658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 41879364 - 41879143
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| |||||||| |||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||| |         ||||| ||||||    
T  41879364 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggttagtgataaaattaaaacgtatttttttaaaagaa--caatgttctatt 41879267  T
Q  776 tatattttttaaaagataaatataaggt----------ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| |||||           |||||||| |||||| ||||||||||||||| |||| ||||  |||||||||||||| |||    
T  41879266 tatattttttaaaagataaatacaaggtaccgtatatatgcggtacatccaaaggtgaaaatgactaccgaatacatgagaaacccccacctaacaccaa 41879167  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  41879166 aatcaagaggaactaattctaata 41879143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 676 - 804
Target Start/End: Original strand, 37430076 - 37430204
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||| |         | ||| ||||||    
T  37430076 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtttttttttttaaaagagcgatgttctatt 37430175  T
Q  776 tatattttttaaaagataaatataaggtg 804  Q
    |||||||||||||||||||||| ||||||    
T  37430176 tatattttttaaaagataaatacaaggtg 37430204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 690 - 887
Target Start/End: Original strand, 5860674 - 5860885
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-attttta-tnnnnnnnntcaatgatctatttatattttttaa 787  Q
    |||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||| | || |||| |         ||||| ||||||||||||||||||    
T  5860674 agaatttggaggctcggctctggaaatgaaaagaggtcaatgataaaatcaaaacataatatttatttttaaagagcaatgttctatttatattttttaa 5860773  T
Q  788 aagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggat 875  Q
    |||||||||| ||||||          |||||||||||| || |||||||||||||| ||||| ||||  ||||| |||||||| ||||| | ||||||     
T  5860774 aagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccatatacatgagaaaccccaacctaacaccaaaatcaagaggaa 5860873  T
Q  876 ctaattctaata 887  Q
    ||||||||||||    
T  5860874 ctaattctaata 5860885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 676 - 752
Target Start/End: Original strand, 20003728 - 20003804
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||| |||||| ||||||||||||  || |||||||||||  ||||||||||||||||||||||||||    
T  20003728 cagggccgtccctgagaatttggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacgtattttt 20003804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 108199 - 108301
Alignment:
Q  348 attatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgacc-aaatacattaagtattgaatgaattta 446  Q
    |||||||||||||  |||||  ||||||||| ||||||| |||| || ||||||||| ||||||||| |||| ||||||||||| |||  ||||||| ||    
T  108199 attatatttataaataaaaaattactttttaggttcattgaatatatgatatatttggtctatatatagaccaaaatacattaattatcaaatgaatcta 108298  T
Q  447 aaa 449  Q
    |||    
T  108299 aaa 108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 2627301 - 2627204
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatat-attgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||| |||||||||  |||||||||||||||| |||| ||  | |||||  ||||||| |||||||||||||||||  |||||||||||| |||||||    
T  2627301 ttattagcaaaaattaactttttaagttcattcaataaatggtgtatttagtctatattattgaccaaatacattatttattgaatgaatctaaaaag 2627204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 30857358 - 30857259
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||  |||||||||  || ||| ||| | ||||||||||||| |||| |||  |||||||||||||| |||| ||||||| |||||||    
T  30857358 atttataagcaaaaaattactttttagatttattgaatgcctaatatatttgatgtataatatataccaaatacattaaatattcaatgaatctaaaaag 30857259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 448
Target Start/End: Complemental strand, 289218 - 289150
Alignment:
Q  381 ttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaatttaaa 448  Q
    ||||| ||||| |||||||||||| |||||| ||| ||||||||||||||| |||| ||||||| ||||    
T  289218 ttcataaaataaataatatatttggtctataatatagaccaaatacattaaatattcaatgaatctaaa 289150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 442
Target Start/End: Complemental strand, 4578318 - 4578227
Alignment:
Q  353 atttataagcaaaaatgt-actttttaagttcattaaatacataatatatttgatctatat-attgaccaaatacattaagtattgaatgaa 442  Q
    |||||||||||||||  | |||||||| ||||||| ||||| |||| ||||| || ||||| || |||||||||||||| || |||||||||    
T  4578318 atttataagcaaaaaaatcactttttaggttcattgaatacctaatgtatttcatatatattatagaccaaatacattaggtgttgaatgaa 4578227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 805 - 846
Target Start/End: Complemental strand, 5942742 - 5942701
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgagg 846  Q
    ||||||||||||||| ||||||| |||||||||||| |||||    
T  5942742 gcggtacacccaaaggtgaaaatcactaccgtatacatgagg 5942701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 675 - 890
Target Start/End: Complemental strand, 106724 - 106497
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| |||||    
T  106724 acagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttttaaaagaacaatgttctat 106625  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||    
T  106624 ttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacca 106525  T
Q  864 aaagc-agaggatctaattctaataggc 890  Q
    ||||| |||||| |||| ||||||||||    
T  106524 aaagcaagaggacctaaatctaataggc 106497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 17169151 - 17168926
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||||    
T  17169151 cagggccgtccctaagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacgtattttt-ttaaaaaaagcaatgttctatt 17169053  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||    
T  17169052 tatattttttaaaagataaatataaggtgttgtatatatgcggtacacccaaaggtgaaaatgactaccatatacatgaggaacccctacctaacaccaa 17168953  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  17168952 aagcaagaagacctaattctaataggc 17168926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 668 - 890
Target Start/End: Complemental strand, 19955920 - 19955687
Alignment:
Q  668 tatataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaat 767  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||||| |||||| |         ||||    
T  19955920 tatatatacagggctgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgaattttt-ttttaaaaagcaat 19955822  T
Q  768 gatctatttatattttttaaaagataaatataaggt----------ggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacct 857  Q
    ||||||||||||||||||||||||||||||||||||           ||||||||||||||| |||||||||||||||||||  ||||| ||||||||||    
T  19955821 gatctatttatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacccccacct 19955722  T
Q  858 aaca-caaaagc-agaggatctaattctaataggc 890  Q
    |||| ||||||| |||||| |||||||||||||||    
T  19955721 aacaccaaaagcaagaggacctaattctaataggc 19955687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 9180922 - 9181148
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||| | |||| |||||||| |         ||||| ||||||    
T  9180922 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaattaaaaatgtatttttgttttaaaaaacaatgttctatt 9181021  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          |||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  9181022 tatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 9181121  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  9181122 aagcaagaggacctaattctaataggc 9181148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 676 - 888
Target Start/End: Original strand, 40501707 - 40501931
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||||||||||||||||||||||| || ||  ||||||||||| |||||||||||||||||||||||||||            |||||||||||    
T  40501707 cagggccgtccctaagaattcggaggctcgactctgagaatgaaaagaggtcagtgataaaatcaaaacgtattttttaaaaaaaaagtaatgatctatt 40501806  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| | |||||||||||||||||| ||| | ||| |||||||||| |||    
T  40501807 tatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaagaacctccacctaacaccaa 40501906  T
Q  865 aagc-agaggatctaattctaatag 888  Q
    |||| ||| ||||||||||||||||    
T  40501907 aagcaagatgatctaattctaatag 40501931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 9172940 - 9173166
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||| | |||| |||||||| |         ||||| ||||||    
T  9172940 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaattaaaaatgtatttttgttttaaaaaacaatgttctatt 9173039  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          |||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  9173040 tatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 9173139  T
Q  865 aag-cagaggatctaattctaataggc 890  Q
    |||  |||||| |||||||||||||||    
T  9173140 aagtaagaggacctaattctaataggc 9173166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 27906646 - 27906857
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||  |||||||||||||||||| || |||| |         ||||| || |||    
T  27906646 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttccatt 27906745  T
Q  776 tatattttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agagg 873  Q
    |||||||||||||||||||||| |||||| ||   |||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||    
T  27906746 tatattttttaaaagataaatacaaggtgccgc--cacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaatcaagagg 27906843  T
Q  874 atctaattctaata 887  Q
    | ||||||||||||    
T  27906844 aactaattctaata 27906857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 687 - 890
Target Start/End: Complemental strand, 44895832 - 44895622
Alignment:
Q  687 ctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnnt-caatgatctatttatatttttt 785  Q
    |||| |||||||||| |||| | ||| ||||||||||| || |||| ||||||||||| ||||||| |          ||||||||||||||||||||||    
T  44895832 ctaaaaattcggaggttcggttctgggaatgaaaagaggtcggtgaaaaaatcaaaacatattttttttttaaaaaaacaatgatctatttatatttttt 44895733  T
Q  786 aaaagataaatataaggtggc----ggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaa 879  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||| |||||| ||||    
T  44895732 aaaagataaatataaggtggcgggtggtacacccaaaggtgaaaatgattaccgtatacatgaggaacccccacctaacaccaaaagcaagaggacctaa 44895633  T
Q  880 ttctaataggc 890  Q
    |||||||||||    
T  44895632 ttctaataggc 44895622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 44655936 - 44655714
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |||| |         ||||| ||||||    
T  44655936 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagagaccagtgataaaatcaaaacataatttt-tttaaaagagcaatgttctatt 44655838  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || | |||||||||||||||||| ||||| |||||||||||||| |||    
T  44655837 tatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaa 44655738  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  44655737 aatcaagaggaactaattctaata 44655714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 675 - 887
Target Start/End: Complemental strand, 5316876 - 5316653
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    |||||||||||||| |||||| ||||||||| | || | ||||||||||| ||||||||||||||||||||||||||| |         ||||| |||||    
T  5316876 acagggccgtccctgagaatttggaggctcgaccttaggaatgaaaagaggtcagtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctat 5316778  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    ||||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||    
T  5316777 ttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacacca 5316678  T
Q  864 aaagc-agaggatctaattctaata 887  Q
    ||| | |||||| ||||||||||||    
T  5316677 aaatcaagaggaactaattctaata 5316653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 14146495 - 14146300
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| | | |||||||||||  |||||||||||||||||||||||||| |         | ||| ||||||    
T  14146495 cagggccgtccctgagaattcggaggctcggctcttggaatgaaaagaggccagtgataaaatcaaaacgtattttt-tttaaaagagcgatgttctatt 14146397  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||||||          |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  14146396 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacac 14146300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 676 - 890
Target Start/End: Complemental strand, 23185622 - 23185397
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||| ||| |||||||||||||||||||   | | |||||||||  |||||||||||||||||||||||||| |         ||||| ||||||    
T  23185622 cagggccgttcctgagaattcggaggctcggctcgaggattgaaaagaggccagtgataaaatcaaaacgtattttttttaaaagag-caatgttctatt 23185524  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||    
T  23185523 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 23185424  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  23185423 aagcaagaggaactaattctaataggc 23185397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 1366797 - 1367021
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||| ||| ||||| |||||||| ||| ||| |||||||||||  |||||||||| | ||||| ||||||| |         ||||| ||||||    
T  1366797 cagggccgtctctacgaatttggaggctcagctctgggaatgaaaagaggccagtgataaattgaaaacatatttttttttaagag--caatgttctatt 1366894  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||    
T  1366895 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaagatgaaaatgactaccgtatacacgaggaacccccacctaacaccaa 1366994  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  1366995 aagcaagatgacctaattctaataggc 1367021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 51607358 - 51607583
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||| |||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |          |||| | ||||    
T  51607358 caggaccgtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtatttttttaaaaaaaa--aatgttttatt 51607455  T
Q  776 tatattttttaaaagataaatataaggtg-----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    |||||||||||||||||||||||||||||           ||||||||||||||  |||||||||||||||||||| ||||| || |||| |||| | ||    
T  51607456 tatattttttaaaagataaatataaggtggccgtatatatgcggtacacccaaacgtgaaaatgactaccgtatacatgaggaactcccatctaatacca 51607555  T
Q  864 aaagc-agaggatctaattctaataggc 890  Q
    ||||| ||||||  ||||||||||||||    
T  51607556 aaagcaagaggacataattctaataggc 51607583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 4971536 - 4971761
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||| |||||| ||||||| ||||||||| |  || |||||||||||| |||||||||||||||||| ||||||| |         ||||| ||||||    
T  4971536 cagggctgtccctgagaattctgaggctcggttcggggaatgaaaagagaccagtgataaaatcaaaacatatttttttttaaagag-caatgttctatt 4971634  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| |||||           |||||||||||| |  |||||||||||||||||||| ||||| |||||||||||||| |||    
T  4971635 tatattttttaaaagataaatacaaggtaccgtatatatgcggtacacccataagtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 4971734  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| |||||| |||||||||||||||    
T  4971735 aagcaagaggaactaattctaataggc 4971761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 45725233 - 45725118
Alignment:
Q  213 aattccatttttagaacaatttttcttactctccaataatcttca-tgatcaaactgaggcaaaatattttccatgctttaactagacctaataatttaa 311  Q
    |||||||||||| |||||| |||||||||  |  ||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  45725233 aattccatttttggaacaaattttcttacagtgtaataatcatcagtgatcaaactgaggcaaaatattttctatgctttaattagacctaataatttaa 45725134  T
Q  312 gcgtgcacgcttccat 327  Q
    |||| |||||||||||    
T  45725133 gcgtacacgcttccat 45725118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 457701 - 457611
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  457701 atttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 457611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 353 - 443
Target Start/End: Original strand, 30412608 - 30412698
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  30412608 atttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 30412698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 4540632 - 4540729
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||||||||||||||| || ||||||| |||| ||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||    
T  4540632 atttataagcaaaaatgtactttataggttcattgaatatataatgtattcggtctatatattgaccaaatacattaagtattgaatgaatctaaaaa 4540729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 675 - 881
Target Start/End: Complemental strand, 5027747 - 5027528
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat-ttttatnnnnnnnntcaatgatcta 773  Q
    |||||||||||||| |||||||||||||||| ||  || |||||||||||  |||||||||||||||||||||| |||| |         ||||| ||||    
T  5027747 acagggccgtccctgagaattcggaggctcgactcggggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttaaaagagcaatgttcta 5027648  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||| ||||  ||||| |||||||||||||| |    
T  5027647 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccataggtgaaaatgactaccatatagatgaggaacccccacctaacacc 5027548  T
Q  863 aaaagc-agaggatctaatt 881  Q
    |||||| |||||| ||||||    
T  5027547 aaaagcaagaggaactaatt 5027528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 679 - 890
Target Start/End: Original strand, 13913401 - 13913625
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||   ||||||||||||||||| |||||||| |         |||||||||||||||    
T  13913401 ggccgtccctaagaattcggaggcttggctctgagaatgaaaagatgccagtgataaaatcaaaatgtattttt-tttaaaaaagcaatgatctatttat 13913499  T
Q  779 attttttaaaagataaatataaggtg------------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaa 865  Q
    ||||||||||||||||||||||| ||            |||||||||| |||  |||||||||||||||||||| ||||  |||||||||||||| ||||    
T  13913500 attttttaaaagataaatataagttgccgggtatatatgcggtacacctaaaagtgaaaatgactaccgtatacatgagaaacccccacctaacaccaaa 13913599  T
Q  866 agc-agaggatctaattctaataggc 890  Q
    ||| ||| || |||||||||||||||    
T  13913600 agcaagatgacctaattctaataggc 13913625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 353 - 443
Target Start/End: Original strand, 47911861 - 47911951
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||||| |||||||| |||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  47911861 atttataaacaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatattgaccaaatacattaaatattgaatgaat 47911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 676 - 797
Target Start/End: Original strand, 22865378 - 22865499
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||||||||||| |         ||||| ||||||    
T  22865378 cagggccgtccctgagaattcggaggcacggctctgggaatgaaaagaggtcaatgataaaatcaaaacgtattttttttcaaaagagcaatgttctatt 22865477  T
Q  776 tatattttttaaaagataaata 797  Q
    ||||||||||||||||||||||    
T  22865478 tatattttttaaaagataaata 22865499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 6771989 - 6771791
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaac--gtatttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||||||||  || ||||| |         | ||| ||||    
T  6771989 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtgttttttttttttaaagagcgatgttcta 6771890  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||||| || ||||||||||||||||||||  |||| ||| |||||||||||    
T  6771889 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacacgaggaacctccacctaacac 6771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 682 - 862
Target Start/End: Complemental strand, 16140244 - 16140055
Alignment:
Q  682 cgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatt 781  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||  | |||||||||||||||||||||||| |        |  ||| ||||||||||||    
T  16140244 cgtccctgagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacgtattttttttaaaagagt-gatgttctatttatatt 16140146  T
Q  782 ttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||| ||||||          |||||||||| | || |||||||||||||||||||| ||||| | |||||||||||||    
T  16140145 ttttaaaagataaatacaaggtgttgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaatccccacctaacac 16140055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 764 - 890
Target Start/End: Complemental strand, 27559745 - 27559607
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtaccccc 853  Q
    ||||| |||||||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  27559745 caatgttctatttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccccc 27559646  T
Q  854 acctaaca-caaaag-cagaggatctaattctaataggc 890  Q
    |||||||| || |||  |||||| |||||||||||||||    
T  27559645 acctaacaccataagtaagaggacctaattctaataggc 27559607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 679 - 862
Target Start/End: Complemental strand, 50881621 - 50881430
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||| ||||  ||||||| |         ||||| |||||||||    
T  50881621 ggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaattaaaatctatttttttaaaagag--caatgttctatttat 50881524  T
Q  779 attttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||| ||||||          |||||||| | | || ||||||||||||| |||||| ||||| ||| |||||||||||    
T  50881523 attttttaaaagataaatacaaggtgtcgtatatatgcggtacatctagaggtgaaaatgactacagtatacatgaggaacctccacctaacac 50881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 675 - 862
Target Start/End: Complemental strand, 3406615 - 3406418
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||| |||||| |||||| |||||||| |||  || ||||||||||| ||||||||||||| ||||||| ||||| |         | ||| |||||    
T  3406615 acagggctgtccctgagaatttggaggctcagctcggggaatgaaaagaggtcagtgataaaatgaaaacgtttttttttttaaaagagcgatgttctat 3406516  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| ||||||          || |||||| |  || |||||||||||||||||||| ||||| |||||||||||||||    
T  3406515 ttatattttttaaaagataaatacaaggtgccgtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 3406418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 675 - 862
Target Start/End: Original strand, 3440205 - 3440402
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||| |||||| |||||| |||||||| |||  || ||||||||||| ||||||||||||| ||||||| ||||| |         | ||| |||||    
T  3440205 acagggctgtccctgagaatttggaggctcagctcggggaatgaaaagaggtcagtgataaaatgaaaacgtttttttttttaaaagagcgatgttctat 3440304  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| ||||||          || |||||| |  || |||||||||||||||||||| ||||| |||||||||||||||    
T  3440305 ttatattttttaaaagataaatacaaggtgccgtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 3440402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 676 - 797
Target Start/End: Complemental strand, 6889805 - 6889686
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||| | | ||||||||||||||| | ||  ||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||||    
T  6889805 cagggccgtccttgaaaattcggaggctcggttctgagaatgaaaagaggtcagtgataaaatcaaaacgtatttttttaaaagag--caatgttctatt 6889708  T
Q  776 tatattttttaaaagataaata 797  Q
    ||||||||||||||||||||||    
T  6889707 tatattttttaaaagataaata 6889686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 676 - 797
Target Start/End: Complemental strand, 6891651 - 6891532
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||| | | ||||||||||||||| | ||  ||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||||    
T  6891651 cagggccgtccttgaaaattcggaggctcggttctgagaatgaaaagaggtcagtgataaaatcaaaacgtatttttttaaaagag--caatgttctatt 6891554  T
Q  776 tatattttttaaaagataaata 797  Q
    ||||||||||||||||||||||    
T  6891553 tatattttttaaaagataaata 6891532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 690 - 752
Target Start/End: Complemental strand, 34247208 - 34247146
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||    
T  34247208 agaattcggaggctcggctctggaaatgaaaaaaggtcagtgataaaatcaaaacgtagtttt 34247146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 675 - 752
Target Start/End: Original strand, 21740851 - 21740928
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    |||||||||||| | ||||||||||||||||||| ||  |||||||||||  ||||||||||||||||| ||||||||    
T  21740851 acagggccgtccttgagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaatgtattttt 21740928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 693 - 862
Target Start/End: Original strand, 41697072 - 41697250
Alignment:
Q  693 attcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaagat 792  Q
    ||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |         | ||| |||||||||||||||||||||||    
T  41697072 attcggaagctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtattttttttaaaagag-cgatgttctatttatattttttaaaagat 41697170  T
Q  793 aaatataaggtggcg----------gtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||| || ||  ||          ||||| ||| |  |||||||||||||||||||| ||||| |||||||||||||||    
T  41697171 aaatacaaagtatcgtatatatgcagtacatccagaagtgaaaatgactaccgtatacatgaggaacccccacctaacac 41697250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 340 - 451
Target Start/End: Complemental strand, 42074275 - 42074163
Alignment:
Q  340 tccttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctat-atattgaccaaatacattaagtattgaa 438  Q
    |||||||| | | |||||||||||||||  || |||||| ||||||| ||| | ||||||||||| ||||| ||||  ||||||||||||||||||  ||    
T  42074275 tccttccggtcacatttataagcaaaaaactattttttaggttcattgaatgcctaatatatttggtctattatatataccaaatacattaagtatccaa 42074176  T
Q  439 tgaatttaaaaag 451  Q
    |||||||||||||    
T  42074175 tgaatttaaaaag 42074163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 15241137 - 15241229
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    ||||||||||||||| ||| |||||| ||||||| ||||| ||     |||| |||||||||| |||||| |||||||||||||||||||| ||||||    
T  15241137 atttataagcaaaaaagtattttttaggttcattgaatacgta-----tttggtctatatattaaccaaacacattaagtattgaatgaatctaaaaa 15241229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 344 - 451
Target Start/End: Original strand, 44024187 - 44024292
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| ||||||||||||||||||||| |||| | ||||| |||||||||||| |||||| | |||| ||   | |||||||||| ||||||||||| |    
T  44024187 tccgatcatatttataagcaaaaatgtatttttaaggttcaataaatacataatgtatttggtttatacat--gctaaatacattatgtattgaatgatt 44024284  T
Q  444 ttaaaaag 451  Q
     |||||||    
T  44024285 ctaaaaag 44024292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 45725350 - 45725316
Alignment:
Q  132 tagaaagagaatctctctttgcaataaaggagata 166  Q
    |||||||||||||||||||||||||||||||||||    
T  45725350 tagaaagagaatctctctttgcaataaaggagata 45725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 29853308 - 29853231
Alignment:
Q  337 tattccttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatat 414  Q
    ||||| ||||| | ||||||||||| ||||||  |||||||| ||||||| |||| ||||| |||| |||||||||||    
T  29853308 tattcattccggtcatatttataagtaaaaattaactttttatgttcatttaataaataatgtattcgatctatatat 29853231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 34768405 - 34768309
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||| |  |||||||| ||||||| || | ||||| ||| |||||||||||| ||| | |||||| |  ||||||| ||||||||||||    
T  34768405 ttataagcaaaagttgactttttaggttcattcaacaaataatgtatgtgatctatatatagactatatacatcatttattgaaagaatttaaaaag 34768309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 47911980 - 47911880
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||||||||||   |||||||   |||||| ||||  |||| |||||| || |||||| |||||||||||||| ||||| ||||||  ||||||    
T  47911980 atatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 47911881  T
Q  451 g 451  Q
    |    
T  47911880 g 47911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 21945187 - 21945088
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||| ||||||  || |||||| ||||||| || || |||| |||||| |||||| |||  ||||||||||||| ||||| ||||||| |||||||    
T  21945187 atttataaacaaaaaactattttttaggttcattcaacacctaatgtatttggtctataatatataccaaatacattaggtattcaatgaatctaaaaag 21945088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 442
Target Start/End: Complemental strand, 42915773 - 42915686
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaa 442  Q
    |||||||||||||   ||||||||||||||||||||| || |||||| || ||||||||| ||| | || ||| |  |||||||||||    
T  42915773 ttataagcaaaaaaacactttttaagttcattaaataaatgatatatgtggtctatatatagactacatgcatcatttattgaatgaa 42915686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 457584 - 457682
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||   |||||||   |||||| ||||  |||| |||||| || |||||| |||||||||||||| ||||| ||||||  |||||||    
T  457584 atttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaag 457682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 26700071 - 26700113
Alignment:
Q  373 tttttaagttcattaaatacataatatatttgatctatatatt 415  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  26700071 tttttaaattcattaaataaataatatatttgatctaaatatt 26700113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 30412725 - 30412627
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||   |||||||   |||||| ||||  |||| |||||| || |||||| |||||||||||||| ||||| ||||||  |||||||    
T  30412725 atttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaag 30412627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 47084704 - 47084594
Alignment:
Q  342 cttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatat-tgaccaaatacattaagtattgaatg 440  Q
    |||||||||| |||||||| |||||    | |||||| ||||||  ||||  |||| ||||||||||||| || |||||||||||||||| ||||  ||     
T  47084704 cttccgattacatttataaacaaaacataattttttaggttcatagaataactaatgtatttgatctataaatatgaccaaatacattaattatttgata 47084605  T
Q  441 aatttaaaaag 451  Q
    |||||||||||    
T  47084604 aatttaaaaag 47084594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 442
Target Start/End: Complemental strand, 4540749 - 4540660
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaa 442  Q
    ||||||||||||||| | | ||||||  |||||| ||||| |||| |||||| || |||||| |||| |||||||||  |||| ||||||    
T  4540749 atttataagcaaaaaagcattttttagattcattcaatacttaatgtatttggtcaatatatagaccgaatacattatatattcaatgaa 4540660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 804
Target Start/End: Original strand, 38547040 - 38547081
Alignment:
Q  763 tcaatgatctatttatattttttaaaagataaatataaggtg 804  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  38547040 tcaatgttctatttaaattttttaaaagataaatacaaggtg 38547081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 752
Target Start/End: Original strand, 39134637 - 39134714
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    |||||||||| |||| |||| |||||||||||||  | || ||||||||||   || ||||||| |||||||||||||    
T  39134637 acagggccgttcctacgaatccggaggctcggctccgtaagtgaaaagagactcgtaataaaataaaaacgtattttt 39134714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 673 - 889
Target Start/End: Complemental strand, 26716316 - 26716087
Alignment:
Q  673 aaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatct 772  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |         ||||| |||    
T  26716316 aaacagggccgtccctaagaattcgttggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaacgtatttttttttaaaagagcaatgttct 26716217  T
Q  773 atttata-ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca 861  Q
    ||||||| |||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  26716216 atttatatttttttaaaagataaatataaggtgccatatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaaca 26716117  T
Q  862 c-aaaagc-agaggatctaattctaatagg 889  Q
    | |||||| |||| | ||||||||||||||    
T  26716116 caaaaagcaagagaacctaattctaatagg 26716087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 676 - 886
Target Start/End: Complemental strand, 24410623 - 24410398
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat--ttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||||||||||||||  |||| |         ||||| ||||    
T  24410623 cagggccgtccctaagaattcggaggctcggttttgggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttttaaaaaacaatgttcta 24410524  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggta-cccccacctaacac 862  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||    
T  24410523 tttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccccccacctaacac 24410424  T
Q  863 --aaaagcagaggatctaattctaat 886  Q
      ||||  |||||| |||||||||||    
T  24410423 caaaaacaagaggacctaattctaat 24410398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 27506659 - 27506884
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||  |||||||||||||||||||||||||| |         ||||||||||||    
T  27506659 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgtattttt-taaaaaaaagcaatgatctatt 27506757  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          | ||||||||||||| | ||||||||||| |||||| ||||| || ||||||||||| |||    
T  27506758 tatattttttaaaagataaatataaggtgccgtatatatgtggtacacccaaaggtaaaaatgactactgtatacatgaggaactcccacctaacaccaa 27506857  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  27506858 aagcaagatgacctaattctaataggc 27506884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 4506078 - 4505855
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||    
T  4506078 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatt 4505979  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || | |||||||||||||||||| ||||| |||||||||||||| |||    
T  4505978 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacccccacctaacaccaa 4505879  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  4505878 aatcaagaggaactaattctaata 4505855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 674 - 887
Target Start/End: Complemental strand, 3155403 - 3155178
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||| ||||||||||||| ||||| || |||| |         ||||| ||||    
T  3155403 aacagggccgtccctgagaattcggaggctcggctttaaaaatgaaaagaggtcagtgataaaattaaaacataattttttttaaaagagcaatgttcta 3155304  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||| | || |||||||||||||||||||| ||||| |||||||||||||| |    
T  3155303 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacccccacctaacacc 3155204  T
Q  863 aaaagc-agaggatctaattctaata 887  Q
    |||| | |||||| ||||||||||||    
T  3155203 aaaatcaagaggaactaattctaata 3155178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 676 - 888
Target Start/End: Original strand, 29939781 - 29940004
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||| |||||||| |||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||| |         ||||| ||||||    
T  29939781 caggaccgtccctgagaattcgaaggctcggctctgggaataaaaagaggtcagtgataaaatcaaaacgtattttttttaaaagag-caatgttctatt 29939879  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    ||||||||||| |||||||||| ||||||          ||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||| |||    
T  29939880 tatattttttacaagataaatacaaggtgtcgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaaccaccacctaacaccaa 29939979  T
Q  865 aagc-agaggatctaattctaatag 888  Q
    |||| |||||| |||||||||||||    
T  29939980 aagcaagaggaactaattctaatag 29940004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 808
Target Start/End: Complemental strand, 8327801 - 8327670
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||| |||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||    
T  8327801 caggaccgtccctaaaaattcggaggctcagttctggaaatgaaaagagatcagtgataaaatcaaaacgtattttt-tttaaaaaagcaatgatctatt 8327703  T
Q  776 tatattttttaaaagataaatataaggtggcgg 808  Q
    |||||||||||||||||||||||||||||||||    
T  8327702 tatattttttaaaagataaatataaggtggcgg 8327670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 679 - 890
Target Start/End: Original strand, 10762488 - 10762709
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    ||||||||||||||||| |||||||| ||| ||| |||||||||||  |||||||||||| ||||||| ||||| |         ||||| |||||||||    
T  10762488 ggccgtccctaagaatttggaggctcagctctgggaatgaaaagaggccagtgataaaattaaaacgttttttttttaaagag--caatgttctatttat 10762585  T
Q  779 attttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaag 867  Q
    ||||||||||||||||||||||||||          | ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||| |    
T  10762586 attttttaaaagataaatataaggtgcggtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaatg 10762685  T
Q  868 c-agaggatctaattctaataggc 890  Q
    | |||||| |||||||||||||||    
T  10762686 caagaggacctaattctaataggc 10762709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 669 - 887
Target Start/End: Original strand, 12337358 - 12337589
Alignment:
Q  669 atataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaat 767  Q
    ||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||  |||||||||||||||||  | |||||| |         ||||    
T  12337358 atatatacagggccgtccctgagaattcgaaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaatataatttttttttaaaagagcaat 12337457  T
Q  768 gatctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacct 857  Q
    | |||||||||||||||||||||||||||| ||||||          | |||||||||| || |||||||||||||||||||| ||||| ||||||||||    
T  12337458 gttctatttatattttttaaaagataaatacaaggtgtcatatatatgtggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacct 12337557  T
Q  858 aaca-caaaagc-agaggatctaattctaata 887  Q
    |||| ||||| | |||||| ||||||||||||    
T  12337558 aacaccaaaatcaagaggaactaattctaata 12337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 679 - 887
Target Start/End: Complemental strand, 6965186 - 6964968
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||  || |||| |         ||||| |||||||||    
T  6965186 ggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa--taattttttttaaaagagcaatgttctatttat 6965089  T
Q  779 attttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaag 867  Q
    ||||||||||||||||||| || |||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||||     
T  6965088 attttttaaaagataaatacaaagtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaat 6964989  T
Q  868 c-agaggatctaattctaata 887  Q
    | |||||| ||||||||||||    
T  6964988 caagaggaactaattctaata 6964968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 3953188 - 3952994
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |         | ||| ||||||    
T  3953188 cagggtcgtccctgagaatttggaggctcggctttggaaatgaaaagaggtcagtgataaaatcaaaatgtattttttttaaagac--cgatgttctatt 3953091  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || ||||||||| |||||||| | ||||| |||||||||||||||    
T  3953090 tatattttttaaaagataaatacaaggtgccgtatacatgcggtacacccagaggtgaaaatgattaccgtatgcatgaggaacccccacctaacac 3952994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 9046213 - 9045990
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    |||||||||||| |||||||||  ||||| ||| ||| ||| |||||||  ||||||||||||||||||||||| || |         ||||| ||||||    
T  9046213 cagggccgtcccaaagaattcgttggctcagctctgggaattaaaagaggccagtgataaaatcaaaacgtattgtttttaaaagaa-caatgttctatt 9046115  T
Q  776 tatatttttt-aaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac-a 863  Q
    |||||||||| |||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |    
T  9046114 tatatttttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacaa 9046015  T
Q  864 aaagc-agaggatctaattctaata 887  Q
    ||||| |||||| ||||||||||||    
T  9046014 aaagcaagaggacctaattctaata 9045990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 329 - 451
Target Start/End: Complemental strand, 34360919 - 34360797
Alignment:
Q  329 ataaatactattccttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacatt 428  Q
    ||||||| || ||| || ||| ||||||||||| |||||||||||||||| ||||||| |||| | ||| |||||||||||||||||||| ||| |||||    
T  34360919 ataaataatactccatctgatcatatttataagtaaaaatgtactttttaggttcattgaatatacaatgtatttgatctatatattgactaaacacatt 34360820  T
Q  429 aagtattgaatgaatttaaaaag 451  Q
    ||||||||||| |||||||||||    
T  34360819 aagtattgaataaatttaaaaag 34360797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 351 - 443
Target Start/End: Original strand, 33853839 - 33853931
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||    
T  33853839 atatttataaacaaaaatgtactttttaggttcattgaatacataatgtatttggtttatatattgaccaaataaattaagtattgaatgaat 33853931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 351 - 450
Target Start/End: Complemental strand, 25552045 - 25551946
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||| |||||||||| ||| |||||||||| |||||||||| ||||| || |||||||||| ||||||||||||||||||||||||| ||||||    
T  25552045 atatttataaacaaaaatgtattttgtaagttcattgaatacataatgtattttatttatatattgagcaaatacattaagtattgaatgaatctaaaaa 25551946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 8906996 - 8907193
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||| ||| ||||||||||||||||||| || ||||||||||||  |||||||||||||||||| | |||||| |          |||| |||||    
T  8906996 cagggccgttcctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaacataatttttttttaaaagagtaatgttctat 8907095  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| |||| |          |||||||||||| || | |||||||||||||||||| ||||  |||||||||||||||    
T  8907096 ttatattttttaaaagataaatacaaggcgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgagaaacccccacctaacac 8907193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 679 - 804
Target Start/End: Complemental strand, 34694155 - 34694031
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    |||||||||| |||||||||||| |||| | |||||||||||||||  | |||||||||||||||||||||||| |         ||||| |||||||||    
T  34694155 ggccgtccctgagaattcggaggttcggatctggaaatgaaaagaggcccgtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctatttat 34694057  T
Q  779 attttttaaaagataaatataaggtg 804  Q
    ||||||||||||||||||| ||||||    
T  34694056 attttttaaaagataaatacaaggtg 34694031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 679 - 804
Target Start/End: Complemental strand, 34716567 - 34716443
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    |||||||||| |||||||||||| |||| | |||||||||||||||  | |||||||||||||||||||||||| |         ||||| |||||||||    
T  34716567 ggccgtccctgagaattcggaggttcggatctggaaatgaaaagaggcccgtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctatttat 34716469  T
Q  779 attttttaaaagataaatataaggtg 804  Q
    ||||||||||||||||||| ||||||    
T  34716468 attttttaaaagataaatacaaggtg 34716443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 347 - 450
Target Start/End: Complemental strand, 37309351 - 37309247
Alignment:
Q  347 gattatatttataagcaaaaatgtactttttaag-ttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaattt 445  Q
    ||||||||||||||  ||||||||||||||| || |||| |||||||||||| |||||| | | |||||||||||||||||| ||||||||||| ||| |    
T  37309351 gattatatttataaataaaaatgtacttttttaggttcaataaatacataatgtatttggtttgtatattgaccaaatacataaagtattgaataaatat 37309252  T
Q  446 aaaaa 450  Q
    |||||    
T  37309251 aaaaa 37309247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 40636317 - 40636194
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||  |||||||||||||||||| ||||||| |         ||||| ||||||||||    
T  40636317 gccgtccctgagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaacatattttt-tttaaaagagcaatgttctatttata 40636219  T
Q  780 ttttttaaaagataaatataaggtg 804  Q
    |||||||||||||||||| ||||||    
T  40636218 ttttttaaaagataaatacaaggtg 40636194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 789
Target Start/End: Original strand, 1396617 - 1396730
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||| ||| | |||||||||||||||| || |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||    
T  1396617 cagggccttccttgagaattcggaggctcgactctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatt 1396716  T
Q  776 tatattttttaaaa 789  Q
    ||||||||||||||    
T  1396717 tatattttttaaaa 1396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 32082234 - 32082119
Alignment:
Q  337 tattccttccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctat-atattgaccaaatacattaagtatt 435  Q
    ||||||||||||| |  ||||||||||||||  || |||||||||| ||| || |  ||||||||||| ||||| ||||  |||||||| |||| |||||    
T  32082234 tattccttccgatcacgtttataagcaaaaaattaatttttaagtttattcaacatctaatatatttggtctataatatataccaaatatattaggtatt 32082135  T
Q  436 gaatgaatttaaaaag 451  Q
    |||||||| |||||||    
T  32082134 gaatgaatctaaaaag 32082119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 752
Target Start/End: Original strand, 5952642 - 5952712
Alignment:
Q  682 cgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||| |||||||||||| |||||| | | |||||||||||  || |||||||||||||||||||||||    
T  5952642 cgtccctgagaattcggaggttcggctctcggaatgaaaagaggccaatgataaaatcaaaacgtattttt 5952712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 344 - 451
Target Start/End: Complemental strand, 33853967 - 33853860
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| | ||||||||||||||| | |||||| |  |||||| ||||| |||| |||||| || ||||||  ||||||||||||| ||||| ||||||     
T  33853967 tccgatcacatttataagcaaaaaagcacttttcagattcattcaatacttaatttatttggtcaatatataaaccaaatacattatgtattcaatgaac 33853868  T
Q  444 ttaaaaag 451  Q
     |||||||    
T  33853867 ctaaaaag 33853860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 36447000 - 36447078
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacatta 429  Q
    ||||||||||||||||||  ||||||||| || ||||||||  ||||||||||  |||  |||||||||| ||||||||    
T  36447000 atatttataagcaaaaatcaactttttaaatttattaaatatctaatatattttgtcttaatattgaccagatacatta 36447078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 752
Target Start/End: Complemental strand, 37182817 - 37182751
Alignment:
Q  686 cctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||| ||||||||||||| || || |||||||||| | || ||||||| |||||||||||||    
T  37182817 cctaagaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaataaaaacgtattttt 37182751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 7162967 - 7162772
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||| |||| |||||| |||  || |||||||||||  |||||||||||| |||| || ||||| |         | ||| ||||||    
T  7162967 cagggccgtccctgagatttcgaaggctcagctcggggaatgaaaagaggccagtgataaaattaaaatgtcttttttttaaaagag-cgatgttctatt 7162869  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||||||          |||||| || || || |||||||||||||||||||  ||||| ||||| |||||||||    
T  7162868 tatattttttaaaagataaatacaaggtgccgtatatatgcggtatactcagaggtgaaaatgactaccgtatatatgaggaacccctacctaacac 7162772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 19268187 - 19268090
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatat-attgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||| |||  |||||||| ||||||| || | ||||| ||||| |||||||| |||||| |||||||| |  ||||||||||| ||||||||    
T  19268187 ttataagcaacaatcaactttttaggttcatttaagaaataatgtatttcatctatattattgactaaatacatcatttattgaatgaacttaaaaag 19268090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 804
Target Start/End: Original strand, 13800550 - 13800590
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggtg 804  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  13800550 caatgttctatttaaattttttaaaagataaatataaggtg 13800590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 804
Target Start/End: Complemental strand, 42029241 - 42029201
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggtg 804  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  42029241 caatgttctatttaaattttttaaaagataaatataaggtg 42029201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 8e-48; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 675 - 890
Target Start/End: Original strand, 34290553 - 34290780
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||||| |         ||||| |||||    
T  34290553 acagggccgtccttaagaattcggaggctcggctctgggaatgaaaagaagtcagtgataaaatcaaaacgtatttttttttaaaaaaacaatgttctat 34290652  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac-- 862  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||      
T  34290653 ttatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacccccacctaacacca 34290752  T
Q  863 aaaagcagaggatctaattctaataggc 890  Q
    ||||  |||||| |||||||||||||||    
T  34290753 aaaacaagaggacctaattctaataggc 34290780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 682 - 890
Target Start/End: Complemental strand, 48157310 - 48157101
Alignment:
Q  682 cgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatt 781  Q
    ||||||||||||||||||||||||| |  || ||| |||||||  ||||||||||||||||||  |||||||          ||||||||||||||||||    
T  48157310 cgtccctaagaattcggaggctcggttccgggaataaaaagaggccagtgataaaatcaaaacacatttttaaaaaaaatg-caatgatctatttatatt 48157212  T
Q  782 ttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaa 879  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||| ||||||| ||||||  |||    
T  48157211 ttttaaaagataaatataaggtggcggtacacccaaaggtgaaaatgactactgtatacatgaggaacccccacttaacatcaaaagcaagaggacgtaa 48157112  T
Q  880 ttctaataggc 890  Q
    ||||| |||||    
T  48157111 ttctagtaggc 48157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 680 - 890
Target Start/End: Complemental strand, 37168551 - 37168329
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| ||||||||||    
T  37168551 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttttaaaaaaacaatgttctatttata 37168452  T
Q  780 ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac-aaaagc 868  Q
    |||||||||||||||||||||||||          | |||| |||||||| |||||||||||||||||||| ||||| || |||||||||||| ||||||    
T  37168451 ttttttaaaagataaatataaggtgccgtatatatgtggtatacccaaaggtgaaaatgactaccgtatacatgaggaactcccacctaacactaaaagc 37168352  T
Q  869 -agaggatctaattctaataggc 890  Q
     |||||| |||||| ||||||||    
T  37168351 aagaggacctaattataataggc 37168329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 8073257 - 8073481
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |        | |||| ||||||    
T  8073257 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacgtattttttttaaaagagt-aatgttctatt 8073355  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          ||||||||||||||  |||||||||||||||||||| ||||| | |||||| ||||| |||    
T  8073356 tatattttttaaaagataaatacaaggtgtcgtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgagg-aaccccacataacaccaa 8073454  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| | |||| |||||||||||||||    
T  8073455 aagcaataggaactaattctaataggc 8073481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 50939152 - 50939377
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||||||||  |||||||||||||||||||||||||| |         ||||||||||||    
T  50939152 cagggccgtccctaagaattcgggggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacgtattttt-ttaaaaaaagcaatgatctatt 50939250  T
Q  776 tatattttttaaaagataaatataaggtggc----------ggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    ||||||||||||||||||||||||||||| |          ||||||||||||| | |||||||||||||||||| ||||| |||||| ||||||| |||    
T  50939251 tatattttttaaaagataaatataaggtgccgtatatatatggtacacccaaaggtaaaaatgactaccgtatacatgaggaacccccgcctaacaccaa 50939350  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| | |||| |||||||||||||||    
T  50939351 aagcaaaaggacctaattctaataggc 50939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 675 - 890
Target Start/End: Original strand, 43207156 - 43207381
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||  |||||||||| | ||||||||||||| |         ||||| |||||    
T  43207156 acagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaattaaaaacgtattttt-tttaaaagagcaatgttctat 43207254  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    ||||||||||||||||||||||||||||||          ||||||||  ||||| |||||||||||||||||||| ||||| |||||||||||||| ||    
T  43207255 ttatattttttaaaagataaatataaggtgccgtatatatgcggtaca-tcaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacacca 43207353  T
Q  864 aaagc-agaggatctaattctaataggc 890  Q
    ||||| |||||| |||||||||||||||    
T  43207354 aaagcaagaggacctaattctaataggc 43207381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 680 - 890
Target Start/End: Complemental strand, 44708660 - 44708439
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    |||||||||||||||||||||||||  || ||| |||||||||||  |||||||||||||||||||||||||| |          |||| ||||||||||    
T  44708660 gccgtccctaagaattcggaggctcaactctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttaaaaaaaga-aatgttctatttata 44708562  T
Q  780 ttttttaaaagataaatataaggtggcg----------gtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc 868  Q
    ||||||||||||||||||||||||| ||          |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  44708561 ttttttaaaagataaatataaggtgccgtatatatccggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaagc 44708462  T
Q  869 -agaggatctaattctaataggc 890  Q
     ||| || |||||||||||||||    
T  44708461 aagatgacctaattctaataggc 44708439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 21582960 - 21582763
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtat-ttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||| |         ||||| | |||    
T  21582960 cagggccgtccctgagaattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaacgtattttttttttaaaagaacaatgttttat 21582861  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||    
T  21582860 ttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 21582763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 47467872 - 47467676
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| |         | ||| ||||||    
T  47467872 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtgttttttttttaaagagcgatgttctatt 47467773  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||||||          ||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||    
T  47467772 tatattttttaaaagataaatacaaggtgccgtatatatgcgatacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacac 47467676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 38681011 - 38681234
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||    
T  38681011 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatt 38681110  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||| ||| || |||||||||||||||||||| ||||| | |||||||||||| |||    
T  38681111 tatattttttaaaagataaatacaaggtgccgtatgtatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaaaccccacctaacaccaa 38681210  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  38681211 aatcaagaggaactaattctaata 38681234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 54619121 - 54619344
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||   || ||||||||||||||| || |||| |         ||||| ||||||    
T  54619121 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaagccaatgataaaatcaaaacataattttttttaaaagagcaatgttctatt 54619220  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||    
T  54619221 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 54619320  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  54619321 aatcaagaggaactaattctaata 54619344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 675 - 887
Target Start/End: Original strand, 36715941 - 36716166
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaatgatcta 773  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||| ||||| | ||||||||         ||||| ||||    
T  36715941 acagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaataaaaacataatttttatttaaaagagcaatgttcta 36716040  T
Q  774 tttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-c 862  Q
    |||||||||||||||||||||||| ||||||          |||||||||||| || |||||| ||| ||||||||| ||||| |||||||||||||| |    
T  36716041 tttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaacgaccaccgtatacgtgagggacccccacctaacacc 36716140  T
Q  863 aaaagc-agaggatctaattctaata 887  Q
    |||| | |||||| ||||||||||||    
T  36716141 aaaatcaagaggaactaattctaata 36716166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 53506802 - 53507028
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnnt-caatgatctat 774  Q
    ||||||||||| |||||||||| |||||||||| ||| |||||| ||||  |||||||||||||||||| ||||||| |          ||||| |||||    
T  53506802 cagggccgtcc-taagaattcgaaggctcggctctgggaatgaagagaggccagtgataaaatcaaaacatattttttttttaaaaaaacaatgttctat 53506900  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    |||||||||||||||||||||||||||||           ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||    
T  53506901 ttatattttttaaaagataaatataaggtaccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacccccacctaacacca 53507000  T
Q  864 aaagc-agaggatctaattctaataggc 890  Q
    ||||| |||||| |||||||||||||||    
T  53507001 aaagcaagaggacctaattctaataggc 53507028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 54407073 - 54407301
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttat---nnnnnnnntcaatgatct 772  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||||||||||||| ||||| |            ||||| |||    
T  54407073 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacgtttttttttttaaaaaaaaaacaatgttct 54407172  T
Q  773 atttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca- 861  Q
    ||||||||||||||||||||||||||||||||          |||||||| |||||| |||||||||||||||||||| | ||  ||||||||||||||     
T  54407173 atttatattttttaaaagataaatataaggtgccgtatatatgcggtacatccaaaggtgaaaatgactaccgtatacat-agtaacccccacctaacac 54407271  T
Q  862 caaaagc-agaggatctaattctaataggc 890  Q
    ||||||| |||||| |||||||||||||||    
T  54407272 caaaagcaagaggacctaattctaataggc 54407301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 677 - 887
Target Start/End: Original strand, 3953816 - 3954037
Alignment:
Q  677 agggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctattt 776  Q
    |||||||||||| |||||||||||| || ||| |||||||||||||||  |||||||||||| |||| |||||||| |         ||||| |||||||    
T  3953816 agggccgtccctgagaattcggaggttccgctctggaaatgaaaagaggccagtgataaaattaaaatgtattttt-tttaaaagaacaatgttctattt 3953914  T
Q  777 atattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaa 865  Q
    ||||||||||||||||||||| ||||||          |||||||||||| || |||||||||  ||||||||| ||||| |||||||||||||| ||||    
T  3953915 atattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgaaaaccgtatacatgaggaacccccacctaacaccaaa 3954014  T
Q  866 agc-agaggatctaattctaata 887  Q
    | | |||||| ||||||||||||    
T  3954015 atcaagaggaactaattctaata 3954037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 27078486 - 27078683
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | |||||| |         ||||| |||||    
T  27078486 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaacataatttttttttaaaaaagcaatgttctat 27078585  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| || |||          |||||| ||||| || |||||||||||||||||||| ||||  ||||| |||||||||    
T  27078586 ttatattttttaaaagataaatacaaagtgccgtatatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacccctacctaacac 27078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 27084283 - 27084480
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgt-atttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | |||||| |         ||||| |||||    
T  27084283 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaacataatttttttttaaaaaagcaatgttctat 27084382  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||||||| || |||          |||||| ||||| || |||||||||||||||||||| ||||  ||||| |||||||||    
T  27084383 ttatattttttaaaagataaatacaaagtgccgtatatatgcggtatacccagaggtgaaaatgactaccgtatacatgagaaacccctacctaacac 27084480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 20512696 - 20512773
Alignment:
Q  373 tttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  20512696 tttttaagttcattgaatacataatatatttgatttatatattgaccaaatacattaagtattaaataaatttaaaaa 20512773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 679 - 862
Target Start/End: Original strand, 53149235 - 53149428
Alignment:
Q  679 ggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttat 778  Q
    ||||||| || ||||||||||||||| | |  || |||||||||||| |||||||||||||||||||| ||||| |         | ||| |||||||||    
T  53149235 ggccgtctctgagaattcggaggctcagttcggggaatgaaaagagaccagtgataaaatcaaaacgtttttttttttaaaagagcgatgttctatttat 53149334  T
Q  779 attttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    ||||||||||||||||||| ||||||          ||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||||    
T  53149335 attttttaaaagataaatacaaggtgccgtatatatgcggtacactcagagataaaaatgactaccgtatacatgaggaacccccacctaacac 53149428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 675 - 752
Target Start/End: Original strand, 48720428 - 48720505
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||    
T  48720428 acagggccgtccctaagaattgggaggctcggctctgggaatgaaaagaggtaagtgataaaatcaaaacgtattttt 48720505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 674 - 846
Target Start/End: Complemental strand, 36606154 - 36605973
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    |||| |||||||||| | |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||    
T  36606154 aacaaggccgtccctgaaaattcggaggttcggctctggaaatgaaaagaggtcagtgataaaatcaaaacgtattttt-tttaatagagcaatgttcta 36606056  T
Q  774 tttatatttttt-aaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgagg 846  Q
    |||||||||||| |||||||||||| ||||||          |||||||||||| |||||||||| |||||||||||| |||||    
T  36606055 tttatattttttaaaaagataaatacaaggtgccgtatatatgcggtacacccagagatgaaaat-actaccgtatacatgagg 36605973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 714 - 890
Target Start/End: Original strand, 9878644 - 9878831
Alignment:
Q  714 aatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaagataaatataaggtg--------- 804  Q
    ||||||||||| |||||||||||||| |||||||||||| |         ||||  |||||||||||||||||||||||||||||||||||             
T  9878644 aatgaaaagaggtcagtgataaaatctaaacgtattttttttaaaagag-caatattctatttatattttttaaaagataaatataaggtgcagtatata 9878742  T
Q  805 -gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac-acaaaagc-agaggatctaattctaataggc 890  Q
     ||||||||||||||| |||||||||||| ||||||| | ||| ||||||| |||||  ||||||| |||||| |||||||||||||||    
T  9878743 tgcggtacacccaaaggtgaaaatgactatcgtatacataaggaacccccatctaacgccaaaagcaagaggacctaattctaataggc 9878831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 676 - 752
Target Start/End: Original strand, 50258542 - 50258618
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||| ||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||||    
T  50258542 cagggccgttcctgagaattcggaggctcggctctgggaacgaaaagagatcagtgataaaatcaaaacatattttt 50258618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 690 - 804
Target Start/End: Complemental strand, 18372656 - 18372543
Alignment:
Q  690 agaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatattttttaaaa 789  Q
    |||||||||||||||| |  ||| ||||||||||| ||||||||||||||||||||||||||| |         ||||| ||||||||||||||||||||    
T  18372656 agaattcggaggctcgacactgggaatgaaaagaggtcagtgataaaatcaaaacgtattttt-tttaaaagagcaatgttctatttatattttttaaaa 18372558  T
Q  790 gataaatataaggtg 804  Q
    |||||||| ||||||    
T  18372557 gataaatacaaggtg 18372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 42098989 - 42098793
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| |||||||| |||||| |||  ||||||||||||||  ||||||||||||||||| || ||||| |         | ||| ||||||    
T  42098989 cagggccgtccctgagaattcgaaggctcagctcgggaaatgaaaagaggccagtgataaaatcaaaatgtctttttttttaaaagagcgatgttctatt 42098890  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||||||          |||||| || || || |||||||||||||||||||| ||||| ||||| || ||||||    
T  42098889 tatattttttaaaagataaatacaaggtgccgtatatatgcggtatactcagaggtgaaaatgactaccgtatacatgaggaacccctacttaacac 42098793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 676 - 738
Target Start/End: Original strand, 29620364 - 29620426
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaat 738  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  29620364 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaat 29620426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 33068330 - 33068223
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaa 442  Q
    |||||| |||||||||| ||||||  || ||||||  |||||| ||||  ||||||||||| |||||| ||| |||||||||||||| ||||| ||||||    
T  33068330 tccgatcatatttataaacaaaaaattattttttacattcattgaatatttaatatatttggtctatattatagaccaaatacattatgtattcaatgaa 33068231  T
Q  443 tttaaaaa 450  Q
    | ||||||    
T  33068230 tataaaaa 33068223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 29398586 - 29398509
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaa 430  Q
    ||||||||| |||||| || |||||| ||||||| |||||||||| |||||| | ||||||| ||| |||||||||||    
T  29398586 atttataagaaaaaatatattttttaggttcattgaatacataatgtatttggtttatatatagactaaatacattaa 29398509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 19959216 - 19959156
Alignment:
Q  356 tataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattg 416  Q
    ||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||||    
T  19959216 tataagcaagaaagtactttttaaattcattgaatgcataatgtatttgatctatatattg 19959156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 43598025 - 43597966
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctat 410  Q
    |||||||||| ||||||  ||||||||||||| ||| ||||| |||||||||||||||||    
T  43598025 atatttataaacaaaaaactactttttaagtttattgaatacctaatatatttgatctat 43597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 443
Target Start/End: Original strand, 14599556 - 14599645
Alignment:
Q  354 tttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    ||||||| ||||||||||| ||||| ||| ||| |||||||||| |||||| ||| ||||  || || ||||||||  ||||||||||||    
T  14599556 tttataaacaaaaatgtaccttttaggttgattgaatacataatgtatttggtctttataaagatcagatacattatatattgaatgaat 14599645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 821 - 862
Target Start/End: Original strand, 29620461 - 29620502
Alignment:
Q  821 tgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  29620461 tgaaaatgactaccgtatacatgaggaacccccacctaacac 29620502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 805 - 887
Target Start/End: Complemental strand, 18372528 - 18372444
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaattctaata 887  Q
    ||||||||| || || |||||||||||||||||||| ||||| | ||||| |||||| ||||| | |||||| ||||||||||||    
T  18372528 gcggtacacacagaggtgaaaatgactaccgtatacatgaggaatccccatctaacaccaaaatcaagaggaactaattctaata 18372444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 45799999 - 45799951
Alignment:
Q  381 ttcattaaatacataatatatttgatctatatattgaccaaatacatta 429  Q
    |||||| |||||||||| |||||||||||||| | ||||||||||||||    
T  45799999 ttcattgaatacataatgtatttgatctatatgtagaccaaatacatta 45799951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 35183585 - 35183544
Alignment:
Q  382 tcattaaatacataatatatttgatctatatattgaccaaat 423  Q
    ||||| |||||||||| |||||| ||||||||||||||||||    
T  35183585 tcattgaatacataatgtatttggtctatatattgaccaaat 35183544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 38207453 - 38207534
Alignment:
Q  370 tactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||  ||| || |||| ||||| |||||||| ||||| | |||||||||||||| |  |||||||||| |||||||    
T  38207453 tactttttacattcgttgaatatataatgtatttgatatatatgtagaccaaatacattaggggttgaatgaatctaaaaag 38207534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 27788608 - 27788832
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         ||||  ||||||    
T  27788608 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtatttttttaaaagag--caattttctatt 27788705  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||    
T  27788706 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 27788805  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||| ||||||||    
T  27788806 aagcaagatgacctaattttaataggc 27788832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 675 - 888
Target Start/End: Complemental strand, 17354143 - 17353918
Alignment:
Q  675 acagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctat 774  Q
    ||||||||||||||||||||||||||||||| || | | ||||||||||| ||||||||||||||||||||||||||| |         ||||| |||||    
T  17354143 acagggccgtccctaagaattcggaggctcgactcttggaatgaaaagaggtcagtgataaaatcaaaacgtattttttttaaaaaaagcaatgttctat 17354044  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||  |||||||||||| ||||||| ||| | |||||||||||||| ||    
T  17354043 ttatattttttaaaagataaatataaggtgtcgtatatatgcggtacacccaaatgtgaaaatgactatcgtatacatgatgaacccccacctaacacca 17353944  T
Q  864 aaagc-agaggatctaattctaatag 888  Q
    ||||| |||||| |||||||||||||    
T  17353943 aaagcaagaggacctaattctaatag 17353918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 7055696 - 7055590
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7055696 tccgatcacatttataagcaaaaatgtactttttaggttcattgaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 7055597  T
Q  444 ttaaaaa 450  Q
     ||||||    
T  7055596 ctaaaaa 7055590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 676 - 887
Target Start/End: Original strand, 13727317 - 13727540
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||    
T  13727317 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatt 13727416  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| |||    
T  13727417 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 13727516  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  13727517 aatcaagaggaactaattctaata 13727540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 890
Target Start/End: Original strand, 20711638 - 20711864
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||| ||||||| ||||||||||||||||| | ||| ||||||||||| ||||| ||||||||||||||||||||| |         ||||| ||||||    
T  20711638 cagggacgtccctgagaattcggaggctcggttctgggaatgaaaagaggtcagtcataaaatcaaaacgtatttttttttaaaagagcaatgttctatt 20711737  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||  ||    
T  20711738 tatattttttaaaagataaatataaggtgccgtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacccccatctaacattaa 20711837  T
Q  865 aagc-agaggatctaattctaataggc 890  Q
    |||| ||| || |||||||||||||||    
T  20711838 aagcaagatgacctaattctaataggc 20711864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 674 - 890
Target Start/End: Original strand, 235141 - 235369
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatcta 773  Q
    |||||| || |||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||||||||||||||| |         ||||||||||    
T  235141 aacaggaccatccctaagaattcggaggttcggctatgagaatgaaaagagaccagtgataaaatcaaaacgtattttt-ttttaaaaagcaatgatcta 235239  T
Q  774 tttatattttttaaaagataaatataaggtggcg------------gtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca 861  Q
    ||||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||    
T  235240 tttatattttttaaaagataaatataaggtgccgggtatatataccgtacacccaaagatgaaaatgactaccgtatacatgagaaacccccacc-aaca 235338  T
Q  862 -caaaagc-agaggatctaattctaataggc 890  Q
     ||||||| |||||| |||||||||||||||    
T  235339 ccaaaagcaagaggacctaattctaataggc 235369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 21280733 - 21280510
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||||||||||| || |||| |         ||||| ||||||    
T  21280733 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataattttttttaaaagagcaatgttctatt 21280634  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          |||||||||||| || | |||||||||||||||||| ||||| || ||||||||||| |||    
T  21280633 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaactcccacctaacaccaa 21280534  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  21280533 aatcaagaggaactaattctaata 21280510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 686 - 890
Target Start/End: Complemental strand, 28075964 - 28075745
Alignment:
Q  686 cctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt---atnnnnnnnntcaatgatctatttatattt 782  Q
    |||||||||| |||||||||||| ||| |||||||||||  |||||| |||||||||||||||||||   ||         ||||| |||||||||||||    
T  28075964 cctaagaatttggaggctcggctctgggaatgaaaagaggccagtgaaaaaatcaaaacgtattttttttattttaaaaagcaatgttctatttatattt 28075865  T
Q  783 tttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac--aaaagcag 870  Q
    ||||||||||||||||||||||          ||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||  ||||  ||    
T  28075864 tttaaaagataaatataaggtgccgtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacccccacctaacaccaaaaacaag 28075765  T
Q  871 aggatctaattctaataggc 890  Q
    |||| |||||||||||||||    
T  28075764 aggacctaattctaataggc 28075745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 676 - 887
Target Start/End: Complemental strand, 21479683 - 21479459
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta-tttttatnnnnnnnntcaatgatctat 774  Q
    |||||||||| || |||||| |||||||||||| |||||||||||||||  |||||||||||||||||| || ||||| |         ||||| |||||    
T  21479683 cagggccgtctctgagaatttggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacataatttttttttaaaagagcaatgttctat 21479584  T
Q  775 ttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-ca 863  Q
    ||||||||||||||||||||||| ||||||          |||||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||    
T  21479583 ttatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacccccacctaacacca 21479484  T
Q  864 aaagc-agaggatctaattctaata 887  Q
    ||| | |||||| ||||||||||||    
T  21479483 aaatcaagaggaactaattctaata 21479459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 344 - 445
Target Start/End: Original strand, 9758709 - 9758809
Alignment:
Q  344 tccgattatatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaat 443  Q
    |||| ||| ||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  9758709 tccggttacatttataagcaaacatgtactttttaggttcattaa-tacataatgtatttgatctatatattgaccaaatacattaagcattgaatgaat 9758807  T
Q  444 tt 445  Q
    ||    
T  9758808 tt 9758809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 682 - 890
Target Start/End: Complemental strand, 19987330 - 19987123
Alignment:
Q  682 cgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttatatt 781  Q
    |||||||||||||||||||| |||||| |   ||||||||||| ||||||||||  ||||||||||||||| |         ||||||||||||||||||    
T  19987330 cgtccctaagaattcggaggatcggctctcagaatgaaaagaggtcagtgataa--tcaaaacgtatttttttaagaaaag-caatgatctatttatatt 19987234  T
Q  782 ttttaaaagataaatataaggtggcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc-agaggatctaa 879  Q
    |||| |||||||||||||| ||| |||||||||||||  ||||||||  |||| ||||| | ||| | |||||||||||| ||||||| ||| || ||||    
T  19987233 tttttaaagataaatataaagtgacggtacacccaaatgtgaaaatggttaccatatacataaggaatccccacctaacaccaaaagcaagatgacctaa 19987134  T
Q  880 ttctaataggc 890  Q
    |||||||||||    
T  19987133 ttctaataggc 19987123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 677 - 887
Target Start/End: Complemental strand, 33774305 - 33774082
Alignment:
Q  677 agggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta-tttttatnnnnnnnntcaatgatctatt 775  Q
    |||||| ||| | ||||||||||||||||||| || ||||||||||||  |||| ||||||||||||| || ||||| |          |||| ||||||    
T  33774305 agggccatccttgagaattcggaggctcggctctgaaaatgaaaagaggccagtaataaaatcaaaacataatttttttttaaaagagtaatgttctatt 33774206  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caa 864  Q
    |||||||||||||||||||||| ||||||          ||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||| |||    
T  33774205 tatattttttaaaagataaatacaaggtgccgtatatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacccccacctaacaccaa 33774106  T
Q  865 aagc-agaggatctaattctaata 887  Q
    || | |||||| ||||||||||||    
T  33774105 aatcaagaggaactaattctaata 33774082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 676 - 862
Target Start/End: Original strand, 30832443 - 30832638
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| |||||||| |||||||||| ||| |||||||||||  |||||||||||||||||||||||||| |         | ||| ||||||    
T  30832443 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacgtattttt-ttaaaaagcgcgatgttctatt 30832541  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    || ||||||||||| ||||||| ||| ||          | |||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||    
T  30832542 tacattttttaaaaaataaatacaagatgccgtatatatgtggtacacccagagatgaaaatgactaccgtatgcatgaggaacccccacctaacac 30832638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 674 - 862
Target Start/End: Original strand, 24710912 - 24711113
Alignment:
Q  674 aacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntca---atgat 770  Q
    ||||||||||||||| ||||||||||||||| |||  || ||||||||||| | ||||||||||||||||||| ||||| |          |   ||| |    
T  24710912 aacagggccgtccctgagaattcggaggctcagctcagggaatgaaaagaggttagtgataaaatcaaaacgtttttttttttttttaaagagtgatgtt 24711011  T
Q  771 ctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaac 860  Q
    ||||||||||||||||||||||||||| ||||||          | ||||||| || || |||||||||||||||||||| ||||| |||||||||||||    
T  24711012 ctatttatattttttaaaagataaatacaaggtgccgtatatatgtggtacactcagaggtgaaaatgactaccgtatacatgaggaacccccacctaac 24711111  T
Q  861 ac 862  Q
    ||    
T  24711112 ac 24711113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 671 - 804
Target Start/End: Original strand, 27314092 - 27314225
Alignment:
Q  671 ataaacagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgat 770  Q
    |||| ||||||||||||| | |||||||||||||| || ||| |||||||||||  |||||||||||||||||||||||||| |         ||||| |    
T  27314092 ataagcagggccgtccctgaaaattcggaggctcgactctgggaatgaaaagaggccagtgataaaatcaaaacgtattttt-tttaaaagagcaatgtt 27314190  T
Q  771 ctatttatatttttt-aaaagataaatataaggtg 804  Q
    ||||||||||||||| |||||||||||| ||||||    
T  27314191 ctatttatattttttaaaaagataaatacaaggtg 27314225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 678 - 846
Target Start/End: Original strand, 1155767 - 1155947
Alignment:
Q  678 gggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgta--tttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| |||| |||||||||| | | | ||||||||||| |||||||||||||||||| |||  ||||| |         ||||| ||||||    
T  1155767 gggccgtccctaaaaatttggaggctcggttctaggaatgaaaagaggtcagtgataaaatcaaaaagtaatttttttttttaaagagcaatgttctatt 1155866  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgagg 846  Q
    |||||||||||||||||||||| ||||||          |||||||| ||| || |||||||||||||||||||| |||||    
T  1155867 tatattttttaaaagataaatacaaggtgtcatatatatgcggtacatccagaggtgaaaatgactaccgtatacatgagg 1155947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 890
Target Start/End: Complemental strand, 34398039 - 34397819
Alignment:
Q  680 gccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatttata 779  Q
    ||||||||||||||||||||| ||||  | ||| | | |||| ||| |||||||||||||||||||||||||| |         ||||| ||||||||||    
T  34398039 gccgtccctaagaattcggagactcgcatctggga-taaaaaaagaccagtgataaaatcaaaacgtattttttttaaaagag-caatgttctatttata 34397942  T
Q  780 ttttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaaca-caaaagc 868  Q
    |||||||||||||||||| ||||||          |||||||||| |||| | |||||||||| |||| || ||||| ||| |||| ||||| |||||||    
T  34397941 ttttttaaaagataaatacaaggtgacgtatatatgcggtacacctaaaggtaaaaatgactatcgtaaacatgaggaacctccacttaacaccaaaagc 34397842  T
Q  869 -agaggatctaattctaataggc 890  Q
     ||| || |||||||||||||||    
T  34397841 aagaagacctaattctaataggc 34397819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 26717034 - 26716976
Alignment:
Q  393 ataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  26717034 ataatgtatttgatctatatattgaccaaatacattaagcaatgaaagaatttaaaaag 26716976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 764 - 862
Target Start/End: Original strand, 19737698 - 19737806
Alignment:
Q  764 caatgatctatttatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtaccccc 853  Q
    ||||| |||||||||||||||| ||||||||||| ||||||          |||||||||| | || |||||||||||||||||||| ||||| ||||||    
T  19737698 caatgttctatttatatttttttaaagataaatacaaggtgccgtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaaccccc 19737797  T
Q  854 acctaacac 862  Q
    |||||||||    
T  19737798 acctaacac 19737806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 3846442 - 3846540
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    |||||||||||||||   | |||||||||||||| |||| ||||| ||| ||| |||||||| ||||  ||||||||  |||| |||||| ||||||||    
T  3846442 atttataagcaaaaaataattttttaagttcattgaataaataatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaag 3846540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 9605378 - 9605476
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtattgaatgaatttaaaaa 450  Q
    |||||||||||||||   ||||||||| || ||| ||||| |||| |||||||| |||| ||| |||||||||||||| || |||| |||| |||||||    
T  9605378 atttataagcaaaaaacaactttttaatttaattgaatacttaatgtatttgatatatattatagaccaaatacattaggtgttgagtgaacttaaaaa 9605476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 451
Target Start/End: Complemental strand, 16121092 - 16120995
Alignment:
Q  355 ttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctat-atattgaccaaatacattaagtattgaatgaatttaaaaag 451  Q
    ||||||||||||||  ||||||||  ||||||||||| || || |||||| || || |||| |||||| ||||| |  ||||||||||||||||||||    
T  16121092 ttataagcaaaaatcaactttttagattcattaaataaatgatgtatttggtcaataatatagaccaagtacatcatttattgaatgaatttaaaaag 16120995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 20703535 - 20703443
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctatat-attgaccaaatacattaagtattgaatgaa 442  Q
    ||||||||| |||||||| ||| ||||  ||||||| ||||  |||| |||||| ||||||| || ||||||||||||||| |||| ||||||    
T  20703535 atatttatatgcaaaaatttacatttttggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaa 20703443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 9210639 - 9210721
Alignment:
Q  353 atttataagcaaaaatgtactttttaagttcattaaatacataatatatttgatctata-tattgaccaaatacattaagtatt 435  Q
    ||||||||||||||   ||||||||||||||||| || ||||||| |||||| | |||| ||| |||||||||||||| |||||    
T  9210639 atttataagcaaaacactactttttaagttcattgaa-acataatttatttggtatatattatagaccaaatacattaggtatt 9210721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 797
Target Start/End: Complemental strand, 6159538 - 6159505
Alignment:
Q  764 caatgatctatttatattttttaaaagataaata 797  Q
    ||||| ||||||||||||||||||||||||||||    
T  6159538 caatgttctatttatattttttaaaagataaata 6159505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 676 - 862
Target Start/End: Complemental strand, 1527 - 1332
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtatttttatnnnnnnnntcaatgatctatt 775  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |         || || ||||||    
T  1527 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacgtattttt-tttaaaagagcactgttctatt 1429  T
Q  776 tatattttttaaaagataaatataaggtg----------gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||||||||||||||||| ||| ||          |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  1428 tatattttttaaaagataaatacaagctgccgtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacccccacctaacac 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 676 - 752
Target Start/End: Complemental strand, 183244 - 183168
Alignment:
Q  676 cagggccgtccctaagaattcggaggctcggctttggaaatgaaaagagatcagtgataaaatcaaaacgtattttt 752  Q
    ||||||||||||| | ||||| ||||||||||| ||| |||||||||||  |||||||||||| |||||||||||||    
T  183244 cagggccgtccctgaaaattcagaggctcggctctgggaatgaaaagaggccagtgataaaattaaaacgtattttt 183168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 805 - 862
Target Start/End: Complemental strand, 181965 - 181908
Alignment:
Q  805 gcggtacacccaaagatgaaaatgactaccgtatacctgaggtacccccacctaacac 862  Q
    |||||||| ||| || |||||||||||||||||||| ||||| ||||||| |||||||    
T  181965 gcggtacatccagaggtgaaaatgactaccgtatacatgaggaacccccatctaacac 181908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 15202 - 15101
Alignment:
Q  351 atatttataagcaaaaatgtactttttaagttcatta-aatacataatatatttgatctatatattgaccaaatacattaagtattgaatgaatttaaaa 449  Q
    ||||||||||||||||||| || ||||  |||||||  ||| |||||| |||||    |||||||||||||| ||||||||| |||||||||||||||||    
T  15202 atatttataagcaaaaatgcacattttgggttcatttgaatgcataatgtatttaccttatatattgaccaactacattaagaattgaatgaatttaaaa 15103  T
Q  450 ag 451  Q
    ||    
T  15102 ag 15101  T

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