View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5231-Insertion-2 (Length: 883)

Name: NF5231-Insertion-2
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5231-Insertion-2
NF5231-Insertion-2
[»] chr4 (6 HSPs)
chr4 (365-487)||(4739177-4739299)
chr4 (168-328)||(4739278-4739433)
chr4 (740-854)||(4738758-4738872)
chr4 (588-670)||(4738942-4739024)
chr4 (507-548)||(39942059-39942100)
chr4 (12-210)||(55156376-55156574)
[»] chr1 (1 HSPs)
chr1 (35-211)||(30330064-30330240)
[»] chr6 (1 HSPs)
chr6 (35-211)||(33364650-33364826)
[»] chr8 (1 HSPs)
chr8 (83-211)||(32309420-32309548)
[»] chr5 (1 HSPs)
chr5 (507-550)||(5492871-5492914)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 1e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 365 - 487
Target Start/End: Complemental strand, 4739299 - 4739177
Alignment:
Q  365 tccacaacttcaactttatctccattgtttcctcttatagctggagtcactgaagtcatttcttgttcaagataattttcaccacatgaagacaaagatt 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4739299 tccacaacttcaactttatctccattgtttcctcttatagctggagtcactgaagtcatttcttgttcaagataattttcaccacatgaagacaaagatt 4739200  T
Q  465 gttgtaacaatcaaattaaaatt 487  Q
    |||||||||||||||||||||||    
T  4739199 gttgtaacaatcaaattaaaatt 4739177  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 4739433 - 4739278
Alignment:
Q  168 atataaaatattttcaatgtgataacgacaaagattatgacaacacactttcaattcaagatataagccatttaaacaaattaagattgaacccaaaagt 267  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||     ||||||||||| |||| ||| | |||||||||||||||| |    
T  4739433 atataaaatattttcaatgtgataacggcaaagagtatggcaacacactttcaa-----gatataagccagttaagcaagtgaagattgaacccaaaact 4739339  T
Q  268 taacaccacatgaagacattttgtctccacaaaaatggttccacaacttcaactttatctc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4739338 taacaccacatgaagacattttgtctccacaaaaatggttccacaacttcaactttatctc 4739278  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 740 - 854
Target Start/End: Complemental strand, 4738872 - 4738758
Alignment:
Q  740 tgaagcaacaggaattttagaatagaaataaaaattacaaacatcataccaaaaaataataatgacatccaaaacctgcactcaacatagaataaacatt 839  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4738872 tgaagcaacaggaattttagaatagaaatacaaattacaaacatcatgccaaaaaataataatgacatccaaaacctgcactcaacatagaataaacatt 4738773  T
Q  840 taactaaaaacataa 854  Q
     || |||||||||||    
T  4738772 caaataaaaacataa 4738758  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 588 - 670
Target Start/End: Complemental strand, 4739024 - 4738942
Alignment:
Q  588 aaccattcaactacataccgtaataaatattaatttgcacaaacaaatgtnnnnnnngaatattgactctcacaacacaaatg 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||    
T  4739024 aaccattcaactacataccgtaataaatattaatttgcacaaacaaatgtaaaaaaagaatattgactcttacaacacaaatg 4738942  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 548
Target Start/End: Original strand, 39942059 - 39942100
Alignment:
Q  507 gtgctactgtatgggaccaattaaaatcaagctcatttcagt 548  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  39942059 gtgctactgtgtgggatcaattaaaatcaagctcatttcagt 39942100  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 55156376 - 55156574
Alignment:
Q  12 catcatcaactcttacttttagaggtcatcgttattatattttatttcttgatggttttacgannnnnnnatggactttccctcttgcaaataagtctcg 111  Q
    ||||| ||||||||| || | | ||||||||||| |||||||||||||| |||| ||| || |       ||||||||| ||| ||||| | || |  |     
T  55156376 catcaccaactcttagttctggtggtcatcgttactatattttatttctagatgatttcacaaattttttatggacttttcctattgcacacaaattcca 55156475  T
Q  112 agctcattctatttttccccaattttgctatcacattaaaatacagttttataaatatataaaatattttcaatgtgataacgacaaagattatgacaa 210  Q
    || | |||| |||||||  || ||| || |||||||||||| ||| ||| | | | ||||||||| |||||||||||||||||  ||||| ||||||||    
T  55156476 agtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgacaa 55156574  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 30330064 - 30330240
Alignment:
Q  35 ggtcatcgttattatattttatttcttgatggttttacgannnnnnnatggactttccctcttgcaaataagtctcgagctcattctatttttccccaat 134  Q
    |||||||| || ||||||||||||||||||| |||||||         |||||||| |||||  ||||||| || | |||||| || ||||||| |||||    
T  30330064 ggtcatcgctactatattttatttcttgatgattttacggattttttgtggacttttcctctaacaaataaatcacaagctcactccatttttctccaat 30330163  T
Q  135 tttgctatcacattaaaatacagttttataaatatataaaatattttcaatgtgataacgacaaagattatgacaac 211  Q
    || |  |||||||||||| ||| ||| | ||| |||| |||| |||||||||||||||||  || || |||||||||    
T  30330164 ttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaaggagtatgacaac 30330240  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 33364826 - 33364650
Alignment:
Q  35 ggtcatcgttattatattttatttcttgatggttttacgannnnnnnatggactttccctcttgcaaataagtctcgagctcattctatttttccccaat 134  Q
    |||||||| || ||||||||||||||||||| |||||||         | |||||| |||||  ||||||| || | |||||| || ||||||| |||||    
T  33364826 ggtcatcgctactatattttatttcttgatgattttacggattttttgtagacttttcctctaacaaataaatcacaagctcactccatttttctccaat 33364727  T
Q  135 tttgctatcacattaaaatacagttttataaatatataaaatattttcaatgtgataacgacaaagattatgacaac 211  Q
    || |  |||||||||||| ||| ||| | ||| |||| |||| |||||||||||||||||  || || |||||||||    
T  33364726 ttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaaggagtatgacaac 33364650  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 32309548 - 32309420
Alignment:
Q  83 tggactttccctcttgcaaataagtctcgagctcattctatttttccccaattttgctatcacattaaaatacagttttataaatatataaaatattttc 182  Q
    |||||||| |||||  ||||||| || | |||||| || ||||||| |||||||||  |||||||||||| ||| ||| | | | |||| |||| |||||    
T  32309548 tggacttttcctctaacaaataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttc 32309449  T
Q  183 aatgtgataacgacaaagattatgacaac 211  Q
    ||||||||||||  || || |||||||||    
T  32309448 aatgtgataacggaaaggagtatgacaac 32309420  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 550
Target Start/End: Complemental strand, 5492914 - 5492871
Alignment:
Q  507 gtgctactgtatgggaccaattaaaatcaagctcatttcagtga 550  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||    
T  5492914 gtgctactgtgtgggaccaaataaaatcaagctcgtttcagtga 5492871  T

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