View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5231-Insertion-4 (Length: 676)
Name: NF5231-Insertion-4
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231-Insertion-4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 621; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Original strand, 23370163 - 23370831
Alignment:
| Q |
8 |
ccttatagagaatttgaagatgaaaatagaaaatcaagaggttcaagggatagagttgctatcagagaatatattgcctatcgaattcaagatagggatt |
107 |
Q |
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| T |
23370163 |
ccttatagagaatttgaagatgaaaatagaaaatcaagaggttcaagggatagagttgctatcagagaatatattgcctatcgaatttaagatagggatt |
23370262 |
T |
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| Q |
108 |
gcgagtttggaaacattgtttatggaagaagattgcttcagcagttttccgttgatagttacacaatgattgaagctcaaaggctatcttatattcggaa |
207 |
Q |
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| T |
23370263 |
gcgagtttggaaacattgtttatggaagaagattgcttcagcagttttccgttgatagttacacaatgattgaagctcaaaggctatcttatattcggaa |
23370362 |
T |
|
| Q |
208 |
taaccagggaaatattcgttcagatttgttgaatggattacaagaagcagttgagacgggagacaatgacccgcggaaagctggacagcgtgttatactt |
307 |
Q |
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| T |
23370363 |
taactagggaaatattcgttcagatttgttgaatggattacaagaagcagttgagatgggagacaatgacccgcggaaagctggacagcgtgtcatactt |
23370462 |
T |
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| Q |
308 |
cctgattcctttacaggttcaccaaggtacatgtttaataactgtcaagatgcaatggcaatttgcaagagatttggctacccggatctattcatcacgg |
407 |
Q |
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| T |
23370463 |
cccgattcctttacaagttcaccaaggtacatgtttaataactgtcaagatgcaatggcaatttgcaagagatttggctacccggacctattcatcgcag |
23370562 |
T |
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| Q |
408 |
taacttgcaaccaaaattggaaagaaatcaaggaatttgtttcagtgagaggccttagtgcatctgacaggcccgatattatttgtagagtttttaagat |
507 |
Q |
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| T |
23370563 |
taacttgcaaccaaaattggaaagaaatcaaggaatttgttacagagagaggccttagtgcatctgacaggcccgatattatttgtagagtttttaagat |
23370662 |
T |
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| Q |
508 |
gaagcttgatcaaatgatggcagactttaagaaggatgaaatgtttggcaaagttacagcaggtttgtatagaatttagtatgttaaataaaagtttact |
607 |
Q |
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| T |
23370663 |
gaagcttgatcaaatgatggcagactttaagaaggatgaaatgtttggcaaagttacagcaggtttgtatagaatttagtatgttaaataaaagtttaat |
23370762 |
T |
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| Q |
608 |
ttcttataaataatacattgtacaaatattaatattttcacatttcataggtatgtatactgtagaatt |
676 |
Q |
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| T |
23370763 |
ttcttataaataatacattgtacaaatattaatattttcacatttcataggtatgtatactgtagaatt |
23370831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 44 - 571
Target Start/End: Complemental strand, 1562943 - 1562416
Alignment:
| Q |
44 |
agaggttcaagggatagagttgctatcagagaatatattgcctatcgaattcaagatagggattgcgagtttggaaacattgtttatggaagaagattgc |
143 |
Q |
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| T |
1562943 |
agaggatcaaaggaaagagttgctattcgggaatttatagcctttaggattcaagaaagggagtgtgaatttggaaacattatgtacagtagaagacttc |
1562844 |
T |
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| Q |
144 |
ttcagcagttttccgttgatagttacacaatgattgaagctcaaaggctatcttatattcggaataaccagggaaatattcgttcagatttgttgaatgg |
243 |
Q |
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| T |
1562843 |
tccaacagttttctgttgattgttacacaatgattgaagcacaaaggctttctttcataagaaacaatcaagggaacattcgatcagatcttttgaacgg |
1562744 |
T |
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| Q |
244 |
attacaagaagcagttgagacgggagacaatgacccgcggaaagctggacagcgtgttatacttcctgattcctttacaggttcaccaaggtacatgttt |
343 |
Q |
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| T |
1562743 |
actacaagaagcagttgaaagtggagatacagacccccgtaatgctggacagcgtgttatcctgccagattctttcacaggttcaccaaggtatatgttt |
1562644 |
T |
|
| Q |
344 |
aataactgtcaagatgcaatggcaatttgcaagagatttggctacccggatctattcatcacggtaacttgcaaccaaaattggaaagaaatcaaggaat |
443 |
Q |
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| T |
1562643 |
aataattgccaagatgccatggcaatttgtaagagatttggatacccggatctcttcattacatttacgtgcaactcaagttggagtgaaattaagaatt |
1562544 |
T |
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| Q |
444 |
ttgtttcagtgagaggccttagtgcatctgacaggcccgatattatttgtagagtttttaagatgaagcttgatcaaatgatggcagactttaagaagga |
543 |
Q |
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| T |
1562543 |
ttgttggagaaaagggtcttagtgtttcagacaggccagatattatttcccgagtgtttaagatgaaacttgatcagatgatgactgacttcaaaaaaaa |
1562444 |
T |
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| Q |
544 |
tgaaatgtttggcaaagttacagcaggt |
571 |
Q |
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| T |
1562443 |
tgaaatgtttgggaaagtaactgcaggt |
1562416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 21398576 - 21398534
Alignment:
| Q |
335 |
tacatgtttaataactgtcaagatgcaatggcaatttgcaaga |
377 |
Q |
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| T |
21398576 |
tacatgtttaataattgtcaggatgcaatggcaatttgtaaga |
21398534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 44 - 571
Target Start/End: Original strand, 33783414 - 33783941
Alignment:
| Q |
44 |
agaggttcaagggatagagttgctatcagagaatatattgcctatcgaattcaagatagggattgcgagtttggaaacattgtttatggaagaagattgc |
143 |
Q |
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||||| |||| ||| ||||||||||| | |||| ||| |||| | | |||||||| ||||| || || |||||||||||| | || | |||||| | | |
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| T |
33783414 |
agaggatcaaaggaaagagttgctattcgggaatttatagcctttaggattcaagaaagggagtgtgaatttggaaacattatgtacagtagaagacttc |
33783513 |
T |
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| Q |
144 |
ttcagcagttttccgttgatagttacacaatgattgaagctcaaaggctatcttatattcggaataaccagggaaatattcgttcagatttgttgaatgg |
243 |
Q |
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| T |
33783514 |
tccaacagttttctgttgattgttacacaatgattgaagcacagaggctttctttcataagaaacaatcaagggaacattcgatcagatcttttgaacgg |
33783613 |
T |
|
| Q |
244 |
attacaagaagcagttgagacgggagacaatgacccgcggaaagctggacagcgtgttatacttcctgattcctttacaggttcaccaaggtacatgttt |
343 |
Q |
| |
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| T |
33783614 |
actacaagaagcagttgaaagtggagatacagacccccgtaatgctggacagcgtgttatcctgccagattctttcacaggttcaccaaggtatatgttt |
33783713 |
T |
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| Q |
344 |
aataactgtcaagatgcaatggcaatttgcaagagatttggctacccggatctattcatcacggtaacttgcaaccaaaattggaaagaaatcaaggaat |
443 |
Q |
| |
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| T |
33783714 |
aataattgccaagatgccatggcaatttgtaagagatttggatacccggatctcttcattacatttacgtgcaactcaagttggagtgaaattaagaatt |
33783813 |
T |
|
| Q |
444 |
ttgtttcagtgagaggccttagtgcatctgacaggcccgatattatttgtagagtttttaagatgaagcttgatcaaatgatggcagactttaagaagga |
543 |
Q |
| |
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| T |
33783814 |
ttgttggagaaaagggtcttagtgtttcagacaggccagatattatttcccgagtgtttaagatgaaacttgatcagatgatgactgacttcaaaaaaaa |
33783913 |
T |
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| Q |
544 |
tgaaatgtttggcaaagttacagcaggt |
571 |
Q |
| |
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|||||||||||| ||||| || |||||| |
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| T |
33783914 |
tgaaatgtttgggaaagtaactgcaggt |
33783941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 37388632 - 37388677
Alignment:
| Q |
335 |
tacatgtttaataactgtcaagatgcaatggcaatttgcaagagat |
380 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||||||| ||||||| |
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| T |
37388632 |
tacatgtttaataattgtcaggatgcaatgtcaatttgtaagagat |
37388677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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