View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5231-Insertion-5 (Length: 470)
Name: NF5231-Insertion-5
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 4247717 - 4247302
Alignment:
| Q |
7 |
aacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247717 |
aacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaatt |
4247618 |
T |
|
| Q |
107 |
ataggaatggtttcttttacttgctgaaactgacgcctccgaatggatataaggactgaaaaggaaaaataggtatgaatgaaaacatccaaggaatatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247617 |
ataggaatggtttcttttacttgctgaaactgacgcctccggatggatataaggactgaaaaggaaaaataggtatgaatgaaaacatccaaggaatatg |
4247518 |
T |
|
| Q |
207 |
gcatcaaatcattgaaagagcgagcgaaacacagatgctcgaccaaaaactggcattaaggatttgcatttcatcaacaaatataatatgcatagaaaat |
306 |
Q |
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| T |
4247517 |
gcatcaaatcattgaaaga----gcgaaacacagatgctcgaccaaaaactggcattaaggatttgcatttcatcaaca-----aatatgcatagaaaat |
4247427 |
T |
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| Q |
307 |
gaacatgataaagtgattggacaaattctccattggagacaaccccaaacaaaatgttatgtacaatatgcagccaacaagactatcggtgatctgatat |
406 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
4247426 |
gaacatgataaagtgattggacagattctccattggagacaaccccaaacaaaatgttatgtacaatatgcagctaacaagactattggtgatttgatat |
4247327 |
T |
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| Q |
407 |
caagctcaagctaaggaccttcaaa |
431 |
Q |
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| T |
4247326 |
caagctcaagctaaggaccttcaaa |
4247302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 2402355 - 2402573
Alignment:
| Q |
7 |
aacttcatatatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaatt |
106 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||||||| ||| | | ||| |||| || |||| |||| |||||||| ||||||||| |
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| T |
2402355 |
aacttcatatatagaatttgaaatctcaacagttctgtcaaagacatcatcaattgctttatctgtctccaaatgtacaaccttcaatgaattaagaatc |
2402454 |
T |
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| Q |
107 |
ataggaatggtttcttttacttgctgaaactgacgcctccgaatggatataaggactgaaaaggaaaa-ataggtatgaatgaaaacatccaaggaatat |
205 |
Q |
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||||| | || ||||||||| |||||||||| || | | || |||||||||||||| ||||| ||||||||| ||||||||||||||||||| | |
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| T |
2402455 |
gaaggaacaactgctcttacttgctcaaactgacgcatctgggtagagataaggactgaaaatgaaaaaataggtatgtatgaaaacatccaaggaatgt |
2402554 |
T |
|
| Q |
206 |
ggcatcaaatcattgaaag |
224 |
Q |
| |
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||| |||| |||||||||| |
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| T |
2402555 |
ggcgtcaactcattgaaag |
2402573 |
T |
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