View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5231-Insertion-6 (Length: 438)
Name: NF5231-Insertion-6
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 1506300 - 1506730
Alignment:
| Q |
8 |
aatgcatcaaatactcgaattcccctattaaactcttaagttcgctaaagagaacggactgtttgtggacaaacatgggtttcaaaacaccaggtgaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506300 |
aatgcatcaaatactcgaattcccctattaaactcttaagttcgctaaagagaacggactgtttgtggacaaacatgggtttcaaaacaccaggtgaatg |
1506399 |
T |
|
| Q |
108 |
tttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcatgaattttatgaggagaagattttcagttacaaa |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
1506400 |
tttcttgtatgatccagtgtggggctgcattttagaggtgttcgatggtcttcctgttattgatcatgaattttatggggagaaaattttcagttacaaa |
1506499 |
T |
|
| Q |
208 |
gatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctctttcaacaaaaggcattggaaaattcagttgacc |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||||||||||| || || |
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| T |
1506500 |
gatgaattgatgcaagtaggggtgctggttgattttaaggatgccatcaaaaaaattgaaaggctatttgaacaaaaggcattggaaaattcaattaacg |
1506599 |
T |
|
| Q |
308 |
aacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttctgatttctcaaccatcatacgtaaaatgaagtg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1506600 |
gacaacatgtcatctcatttctctcttgttgcaggctgctgaaaggaactgactacagttttccttctgatttctcaaccatcatacggaaaatgaagtg |
1506699 |
T |
|
| Q |
408 |
gttgcgtaccgaggttggtgattttcggtgc |
438 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1506700 |
gttgcgtaccgaggttggtgattttcggtgc |
1506730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 79 - 438
Target Start/End: Original strand, 3012059 - 3012418
Alignment:
| Q |
79 |
aacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcatgaat |
178 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||| |
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| T |
3012059 |
aacatgggtttcaagacaccagctgaatgtttcttgtacgatccagtgtggggctgcattttggaggtattcaatggtctccctgttattgatcataaat |
3012158 |
T |
|
| Q |
179 |
tttatgaggagaagattttcagttacaaagatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctctttca |
278 |
Q |
| |
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|||| | | ||||||||||| || ||||||||| ||| |||||| |||||| ||||||||||| |||| |||||||||||||| ||||| ||| | |
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|
| T |
3012159 |
tttacgggcagaagattttctcttttaaagatgaactgaggcaaatcggggtggtggttgattttggaaatgctatcaaaaaatttgctagtctgtttga |
3012258 |
T |
|
| Q |
279 |
acaaaaggcattggaaaattcagttgaccaacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttctgat |
378 |
Q |
| |
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||||||||||| ||| |||| || |||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
3012259 |
acaaaaggcatcagaagcttcaattaaccaacaacatgtcatgtcatttctcaattgttgcaggctgctggagggaaccgactatagttttccttctgaa |
3012358 |
T |
|
| Q |
379 |
ttctcaaccatcatacgtaaaatgaagtggttgcgtaccgaggttggtgattttcggtgc |
438 |
Q |
| |
|
||| |||||||| || |||||| |||||||||| ||| |||||||||||| ||||| |
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|
| T |
3012359 |
ttcgcaaccatcttatgtaaaacaaagtggttgcatactcgtgttggtgattttaggtgc |
3012418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 2947429 - 2947025
Alignment:
| Q |
8 |
aatgcatcaaatactcgaattcccctattaaactcttaagttcgctaaagagaacggactgtttgtggacaaacatgggtttcaaaacaccaggtgaatg |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||| |||| |||||||||| || || ||||||||||||||||||| ||||| ||||||| |
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| T |
2947429 |
aatgcatcaaatactcgaatgtccctattgaagtcttaaattcgataaagagaacaaggtgctttaagacaaacatgggtttcaaagcaccatgtgaatg |
2947330 |
T |
|
| Q |
108 |
tttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcatgaattttatgaggagaagattttcagttacaaa |
207 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||| ||||||||| ||||| ||||| ||||||| ||| ||||||||| ||||||||||||||||||||| |
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|
| T |
2947329 |
tttcttgtacaatcaagtgtggggatgcattttggaggtattcaatggtattcctattattgaccataaattttatggagagaagattttcagttacaaa |
2947230 |
T |
|
| Q |
208 |
gatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctctttcaacaaaaggcattggaaaattcagttgacc |
307 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||| || | ||||| ||||| || |||||||||||| |||| ||| || ||| |
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| T |
2947229 |
gatgaattaaagcaaataggggtgctggttgatttcaaggatgccgcaaatatttttgctagtctattcaaacaaaaggcatcagaaacctcaattaacc |
2947130 |
T |
|
| Q |
308 |
aacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttctgatttctcaaccatcatacgtaaaatgaagtg |
407 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||| ||||||||||| | ||| |||||||||||| |||| |||||||||||||||| |||| || |
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| T |
2947129 |
caacacatgttatctcatttctctcttgttacaggaagctgaagggaactcgctattgttttccttctggtttcccaaccatcatacgtaatatgagttg |
2947030 |
T |
|
| Q |
408 |
gttgc |
412 |
Q |
| |
|
||||| |
|
|
| T |
2947029 |
gttgc |
2947025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 79 - 412
Target Start/End: Complemental strand, 2930711 - 2930387
Alignment:
| Q |
79 |
aacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcatgaat |
178 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||| | | |
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|
| T |
2930711 |
aacacgggtttcaaaacaccagctgaatgtttcttgtatgatccagtgtggggctgcattctggaggtattcattgatcttcctgttattgatcataact |
2930612 |
T |
|
| Q |
179 |
tttatgaggagaagattttcagttacaaagatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctctttca |
278 |
Q |
| |
|
|||||| || |||||||||| ||||||||| ||| ||| |||||| |||||| ||||||||| | |||| || ||||| ||| ||||||||||| | |
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|
| T |
2930611 |
tttatggggcgaagattttctcttacaaagacgaactgaggcaaatcggggtggtggttgattatggaaatgctataaaaaagttttcaagtctctttga |
2930512 |
T |
|
| Q |
279 |
acaaaaggcattggaaaattcagttgaccaacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttctgat |
378 |
Q |
| |
|
|| |||||||||||||| |||| || ||||| ||||||| ||||||||||| |||||||||| |||| |||| || ||||||||||||| |
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|
| T |
2930511 |
acgaaaggcattggaaacttcaattaaccaaaaacatgttatctcatttctaaaatgttgcaggcagctggaggg--gt-------cttttccttctgat |
2930421 |
T |
|
| Q |
379 |
ttctcaaccatcatacgtaaaatgaagtggttgc |
412 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||| |
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|
| T |
2930420 |
ttctcagccctcatgcgtaaaatgaagtggttgc |
2930387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 398
Target Start/End: Complemental strand, 2921337 - 2921014
Alignment:
| Q |
75 |
gacaaacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcat |
174 |
Q |
| |
|
|||||| ||||||||| ||| |||| ||||||||| | ||||||| | | |||||| |||||||| | |||||| ||| |||||||| ||||| ||| |
|
|
| T |
2921337 |
gacaaatatgggtttccaaataccaagtgaatgttacctgtatgaccaggagtggggatgcattttgtatgtattcaatgaccttcctgtgattgaccat |
2921238 |
T |
|
| Q |
175 |
gaattttatgaggagaagattttcagttacaaagatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctct |
274 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| ||| | ||||||| | | ||||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
2921237 |
aaattttatggagagaagattttcgattacaaagatgaactgaggaaaataggtgcggtggttgattttggagatgctatcaaaaaatttgcttctctct |
2921138 |
T |
|
| Q |
275 |
ttcaacaaaaggcattggaaaattcagttgaccaacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttc |
374 |
Q |
| |
|
| |||| ||||||| || ||| || ||||||| ||||| || ||||||||||||||| | ||||||||||| |||| || || | |||||||| |
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|
| T |
2921137 |
tcaaacagaaggcatcacaatcctcatttaaccaacatcatgttatgtcatttctctcttgtcggaggctgctgaaaggaactgcatataaatttccttc |
2921038 |
T |
|
| Q |
375 |
tgatttctcaaccatcatacgtaa |
398 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2921037 |
cgatttctcaaccatcatacgtaa |
2921014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 394
Target Start/End: Complemental strand, 37796219 - 37795900
Alignment:
| Q |
75 |
gacaaacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccag-tgtggggctgcattttagaggtattcgatggtcttcctgttattgatca |
173 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||| |||| ||||||||||||||| || |||||| ||| |||||||| |||||||| |
|
|
| T |
37796219 |
gacaaacatgggcttcaaaataccaagtgaatgtttcttgtatga-ccagacgtggggctgcattttggatgtattcaatgcccttcctgtgattgatca |
37796121 |
T |
|
| Q |
174 |
tgaattttatgaggagaagattttcagttacaaagatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctc |
273 |
Q |
| |
|
| |||| |||| || || |||||| ||||||| ||||| ||| |||| || || | ||||||||| ||||| ||||| | |||||| |||| |
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|
| T |
37796120 |
taaattctatggagataatattttctcttacaaaaatgaactgaaaaaaatcggtgtagttgttgattttggagatgctatcaacatatttgcttctctc |
37796021 |
T |
|
| Q |
274 |
tttcaacaaaaggcattggaaaattcagttgaccaacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttcctt |
373 |
Q |
| |
|
|| |||| ||||||| || |||| || | ||| || ||||||| |||||||| || ||||| || ||||||||||| | || || || ||||||| |
|
|
| T |
37796020 |
ttcaaacagaaggcatcccaagcttcatttaatcaagaaaatgtcatgtcatttctttcatgttgtagactgctgaaggggactgtttatagatttcctt |
37795921 |
T |
|
| Q |
374 |
ctgatttctcaaccatcatac |
394 |
Q |
| |
|
||||||| || ||||| |||| |
|
|
| T |
37795920 |
ctgatttttctaccattatac |
37795900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 75 - 394
Target Start/End: Complemental strand, 28025214 - 28024895
Alignment:
| Q |
75 |
gacaaacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtattcgatggtcttcctgttattgatcat |
174 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| || |||||| |||| |||||||| ||||||||| |
|
|
| T |
28025214 |
gacaaacatgggtttcaaaataccaagtgaatgtttcttgtatgaccaggtgtggggctgcatttttgatgtattcaatggccttcctgtgattgatcat |
28025115 |
T |
|
| Q |
175 |
gaattttatgaggagaagattttcagttacaaagatgaattgatgcaaataggggtgctggttgattttaaggatgccatcaaaaaatttgcaagtctct |
274 |
Q |
| |
|
|||| |||| || || |||||| ||||||| ||||| ||| |||||| || ||| ||||||||||| | ||||| || ||||||||||| ||||| |
|
|
| T |
28025114 |
aaattctatggagataatattttctcttacaaaaatgaactgaagcaaatcggtgtggtggttgattttgaagatgctataaaaaaatttgcttctctct |
28025015 |
T |
|
| Q |
275 |
ttcaacaaaaggcattggaaaattcagttgaccaacaacatgtcatctcatttctctcttgttgcaggctgctgaagggaagtgactacagttttccttc |
374 |
Q |
| |
|
| |||| || |||| ||| |||| || ||| || ||||||| |||||||| ||||||||||| | |||| |||||| || || || |||||||| |
|
|
| T |
28025014 |
tcaaacagaaagcatcacaaacttcatttactcaagaaaatgtcatgtcatttctttcttgttgcagacagctggagggaactgtttatagatttccttc |
28024915 |
T |
|
| Q |
375 |
tgatttctcaaccatcatac |
394 |
Q |
| |
|
||||||||||| ||| |||| |
|
|
| T |
28024914 |
tgatttctcaagcattatac |
28024895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 4916115 - 4916190
Alignment:
| Q |
75 |
gacaaacatgggtttcaaaacaccaggtgaatgtttcttgtatgatccagtgtggggctgcattttagaggtattc |
150 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
4916115 |
gacaaacatcggtttcaaaacgccaagtgaatgtttcttgtatgatccagtgtggggctgcattttggaagtattc |
4916190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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