View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5231-Insertion-8 (Length: 330)
Name: NF5231-Insertion-8
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231-Insertion-8 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 9548 - 9871
Alignment:
| Q |
7 |
aacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacatgtttataagctcttcatg |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9548 |
aacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacatgtttataagctcttcatg |
9647 |
T |
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| Q |
107 |
gcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgctttaatattaatcctttcctct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9648 |
gcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgctttaatattaatcctttcctct |
9747 |
T |
|
| Q |
207 |
tggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataatcagatttggatgagttaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9748 |
tggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataatcagatttggatgagttaa |
9847 |
T |
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| Q |
307 |
ggccatgatgatcttgtgttgtgc |
330 |
Q |
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| T |
9848 |
ggccatgatgatcttgtgttgtgc |
9871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 11480 - 11157
Alignment:
| Q |
7 |
aacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacatgtttataagctcttcatg |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11480 |
aacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagttccctccaatgacatgtttataagctcttcatg |
11381 |
T |
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| Q |
107 |
gcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgctttaatattaatcctttcctct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11380 |
gcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtttccatgtttgctttaatattaatcctttcctct |
11281 |
T |
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| Q |
207 |
tggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataatcagatttggatgagttaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11280 |
tggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaaatcgagaagcataatcagatttggatgagttaa |
11181 |
T |
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| Q |
307 |
ggccatgatgatcttgtgttgtgc |
330 |
Q |
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|||||||||||||||||||||||| |
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| T |
11180 |
ggccatgatgatcttgtgttgtgc |
11157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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