View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5231_high_5 (Length: 364)
Name: NF5231_high_5
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 95 - 363
Target Start/End: Original strand, 40974176 - 40974443
Alignment:
| Q |
95 |
ttatacatactaaggaaataaatgtctaaatcacttttatccgagtcattattaataaatgccacaggagaggggaatggaaaaaagctcaaaattccaa |
194 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40974176 |
ttatacatactaagaaaataaatgtctaaatcacttttatccgagtcattattaataaatgccacaggagaggggaatggaaaaaagctcaaaattccaa |
40974275 |
T |
|
| Q |
195 |
agtaattatagtaatgcgatgagccatattatagtaatgcgacatcaaagtatttcgttttaatcgtatccagtggatttggtgaatgaactcttaggtt |
294 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40974276 |
agta-ttatagtaattcgatgagccatattatagtaatacgacatcaaagtatttcgttttaatcgtatcaagtggatttggtgaatgaactcttaggtt |
40974374 |
T |
|
| Q |
295 |
attggattattaaaatgtgtggtagtaactaagttgtgtaggatataaagggatttggttatttgtata |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40974375 |
attggattattaaaatgtgtggtagtaactaagttgtgtaggatataaagggatttggttatttgtata |
40974443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 40970852 - 40970940
Alignment:
| Q |
7 |
tttggtgttgatgaagaagaactaattcgtttgtttaaagaggaggacttgaaaaattcagtttccaattttggttgagtcactcgtat |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40970852 |
tttggtgttgatgaagaagaactaattcgtttgtttaaagaggaggacttgaaaaattcagtttccaattttggttgagtcactcgtat |
40970940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University