View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5231_high_8 (Length: 358)
Name: NF5231_high_8
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 32545237 - 32544887
Alignment:
| Q |
1 |
tgtatgttactgtcttcctgttgtttttagaggtcttcctttattttgatttttgtgcgcttcagcaggtctctcatggtgctattcaattcacagcata |
100 |
Q |
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| T |
32545237 |
tgtatgttactgtcttcctgttgtttttagaggtcttcctttattttgatttttgtgcgcttcagcaggtctctcatggtgctattcaattcacagcata |
32545138 |
T |
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| Q |
101 |
cgaagagcttcgtaaaactattgttgatttcaagagcaagggaagtgacaaacaacatcaaaaccctgatcaactcttggtaagttaatggacctgataa |
200 |
Q |
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| T |
32545137 |
cgaagagcttcgtaaaactattgttgatttgaagagcaagggaagtgacaaacaacatcaaaaccctgatcaactcttggtaagttaatggacctgataa |
32545038 |
T |
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| Q |
201 |
cccacatgtactggacaatttacatatcttaaatgattgtttggtgattggcctttttggttacctgtatagccgagtcttgttcccatacatcattgct |
300 |
Q |
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| T |
32545037 |
cccacatgtactggacaatttacatatcttaaatgattgtttggtgattggcctttttggttacctgtatagccgagtcttgttcccatacatcattgct |
32544938 |
T |
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| Q |
301 |
ccagattggtagagcaaagtgacacatttccagaatcatgatcctctgtggt |
352 |
Q |
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| T |
32544937 |
ccagattggtagagcaaagtgacacatttccagaat-atgatcctccgtggt |
32544887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 32530462 - 32530324
Alignment:
| Q |
208 |
gtactggacaatttacatatcttaaatgattgtttggtgattggcctttttggttacctgtatagc--cgag-tcttgttcccatacatcattgctccag |
304 |
Q |
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| T |
32530462 |
gtactggactatttacatttcataaatgatagtttggtgattggcctttttggttacttgaatgacattgagttcttgttcctatacatcattactccat |
32530363 |
T |
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| Q |
305 |
attggtagagcaaagtgacacatttccagaatcatgatcct |
345 |
Q |
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| T |
32530362 |
attggtagagcaaaatgacaca--tccataatcatgatcct |
32530324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 32530617 - 32530492
Alignment:
| Q |
70 |
tctctcatggtgctattcaattcacagcatacgaagagcttcgtaaaactattgttgatttcaagagcaagggaagtgacaaacaacatcaaaaccctga |
169 |
Q |
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||||||| | |||||||||||||| || |||||| |||||||||||||| |||| |||| |||| ||| |||||| | | |||||||||||| ||||| |
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| T |
32530617 |
tctctcaagctgctattcaattcatagtatacgagcagcttcgtaaaactgttgtcaatttgaagaccaaaggaagtaaaatacaacatcaaaaacctga |
32530518 |
T |
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| Q |
170 |
tcaactcttggtaagttaatggacct |
195 |
Q |
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|||| |||||||| |||| ||||||| |
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| T |
32530517 |
tcaaatcttggtatgttattggacct |
32530492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 32519311 - 32519252
Alignment:
| Q |
211 |
ctggacaatttacatatcttaaatgattgtttggtgattggcctttttggttacctgtat |
270 |
Q |
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| T |
32519311 |
ctggactatttacatctcataaatgattgtttggtgattgacctttttggtaacttgtat |
32519252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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