View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5231_low_1 (Length: 252)
Name: NF5231_low_1
Description: NF5231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5231_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 614217 - 613997
Alignment:
| Q |
17 |
aagatggttaagcatggacagatatttagggttacgaaacttgataggtgtctttccatcgtcggtgtttccagaaaagtagtatctttgcatttctgaa |
116 |
Q |
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| T |
614217 |
aagatggttaagcatggacagatatttagggttacgaaacttgataggtgtccttccatcgtcggtgtttccagaaaagtagtatctttgcatttctgaa |
614118 |
T |
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| Q |
117 |
tcttgaagttgcttaagcacgggaacataagaagcatttaaccaagtaaagtcttcatacttctgaacttgcacagtcaccccacggaaatcattcatgg |
216 |
Q |
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| T |
614117 |
tcttgaagttgcttaagcacgggaacataagaagcatttaaccaagtaaagtcttcatacttctgaacttgcacagtcaccccacggaaatcattcatgg |
614018 |
T |
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| Q |
217 |
caaaccacgtcttcatcgcag |
237 |
Q |
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| T |
614017 |
caaaccacgtcttcatcgcag |
613997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 4620133 - 4619920
Alignment:
| Q |
21 |
tggttaagcatggacagatatttagggttacgaaacttgataggtgtctttccatcgtcggtgtttccagaaaagtagtatctttgcatttctgaatctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||| ||||| |||||||| |||| |
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| T |
4620133 |
tggttaagcatggacagatatttagggttacgaaacttgataggtgtctttccaccatcactgtttccggaaaagtagtagctttgtatttctgagtctt |
4620034 |
T |
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| Q |
121 |
gaagttgcttaagcacgggaacataagaagcatttaaccaagtaaagtcttcatacttctgaacttgcacagtcaccccacggaaatcattcatggcaaa |
220 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
4620033 |
gaagttgcttaagcacaggaacatatgaagcatttaaccatgagaagtcttcatacttctgaacttccacagtcaccccacgaaagtcattcatggcaaa |
4619934 |
T |
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| Q |
221 |
ccacgtcttcatcg |
234 |
Q |
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||||| |||||||| |
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| T |
4619933 |
ccacgccttcatcg |
4619920 |
T |
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