View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232-Insertion-1 (Length: 974)

Name: NF5232-Insertion-1
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232-Insertion-1
NF5232-Insertion-1
[»] chr8 (7 HSPs)
chr8 (16-360)||(39526099-39526421)
chr8 (8-203)||(39526648-39526843)
chr8 (16-203)||(39526441-39526628)
chr8 (461-632)||(39525846-39526016)
chr8 (629-758)||(39525684-39525811)
chr8 (794-878)||(39524425-39524512)
chr8 (521-588)||(41415537-41415604)
[»] chr7 (2 HSPs)
chr7 (593-627)||(41215831-41215865)
chr7 (639-687)||(41215713-41215762)
[»] chr3 (2 HSPs)
chr3 (521-591)||(4475738-4475808)
chr3 (521-591)||(42740929-42740999)
[»] chr2 (1 HSPs)
chr2 (521-591)||(42970595-42970665)
[»] chr5 (1 HSPs)
chr5 (521-592)||(33694437-33694508)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 39526421 - 39526099
Alignment:
Q  16 acaagattagcgtcaacacactagtctttctctcttttctatcaacacattccacaagttaatgaaatgagaagcaagatgatgtgtttatttgcattgt 115  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526421 acaagattagcgccaacacaccagtctttctctcttttctatcaacacattccacaagttaatgaaatgagaagcaagatgatgtgtttatttgcattgt 39526322  T
Q  116 ataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaacaaaaacatatgaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||    
T  39526321 ataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaa--------------ca 39526236  T
Q  216 aagaagaaaatagtgtgcggaacaaagatcttcctcttgattgaaacannnnnnnnnnnnntcttcatcttctatcatcatacttatttctcgacctgct 315  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||             |||||||||||||| ||||||||||||||||||||||||    
T  39526235 aagaagaaaatagtgcgcagaacaaagatcttcctcttgattgaaaca------ccccccctcttcatcttctattatcatacttatttctcgacctgct 39526142  T
Q  316 ggtgtgtatgaggcatatagtctttgatctaaatcaaacacataa 360  Q
    ||||||||||||  | |||||||||||||||||||||| ||||||    
T  39526141 ggtgtgtatgag--acatagtctttgatctaaatcaaaaacataa 39526099  T

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Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 39526843 - 39526648
Alignment:
Q  8 tctctctcacaagattagcgtcaacacactagtctttctctcttttctatcaacacattccacaagttaatgaaatgagaagcaagatgatgtgtttatt 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526843 tctctctcacaagattagcgccaacacactagtctttctctcttttctatcaacacattccacaagttaatgaaatgagaagcaagatgatgtgtttatt 39526744  T
Q  108 tgcattgtataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaacaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526743 tgcattgtataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaacaaa 39526648  T

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Target: chr8; HSP #3
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 39526628 - 39526441
Alignment:
Q  16 acaagattagcgtcaacacactagtctttctctcttttctatcaacacattccacaagttaatgaaatgagaagcaagatgatgtgtttatttgcattgt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526628 acaagattagcgccaacacactagtctttctctcttttctatcaacgcattccacaagttaatgaaatgagaagcaagatgatgtgtttatttgcattgt 39526529  T
Q  116 ataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaacaaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526528 ataaatatcatcttctttcttcattgtgtttcttgcttcaaagagagctggtggttaaagtgattaaatccttatatttgtgaacaaa 39526441  T

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Target: chr8; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 461 - 632
Target Start/End: Complemental strand, 39526016 - 39525846
Alignment:
Q  461 cgtcacctgtccaaaccgataaccgagtacatgaacgaacgagattgggccttgattgtgcaaccgtgggtttgatcggattggcagttctggtccaccc 560  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  39526016 cgtcacccgtccaaaccgataaccaagtacatgaacgaacgggattgg-ccttgattgtgcaaccgtgggtttgatcggattggcagttctggttcaccg 39525918  T
Q  561 ccgactgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccaactt 632  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39525917 tcgaccgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccgactt 39525846  T

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Target: chr8; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 629 - 758
Target Start/End: Complemental strand, 39525811 - 39525684
Alignment:
Q  629 acttcagacgaatcatcacaaacatcgatcctccaaaactcccgtaaacaaccattctcctagcttttcatttcccgatttctcatagatttttcaattt 728  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  39525811 acttcagacaaatcatcacaaacatcaatcctccaaaactcccgtaaacaaccattctcctagcttttcacttcccgatttctc--agatttttcaattt 39525714  T
Q  729 tatttgattctcgtaggttttataacggtt 758  Q
    ||||||||||||||||||||||||||||||    
T  39525713 tatttgattctcgtaggttttataacggtt 39525684  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 794 - 878
Target Start/End: Complemental strand, 39524512 - 39524425
Alignment:
Q  794 ttaaacctacgca-gagagagaattttaatacacgtg-cttgttgctgtgataggg-aacagtaagaactgtgtgtatggtactgtag 878  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  39524512 ttaaacctacgcaagagagagaattttaatacacgtggcttgttgttgtgataggggaacagtaagaactgtgtgtatggtactgtag 39524425  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 588
Target Start/End: Original strand, 41415537 - 41415604
Alignment:
Q  521 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccc 588  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| |||||||    
T  41415537 caaccgtgggtttgaacggattggcattttcggtccgtcaccgaccgaaaccgaccgtttgtccaccc 41415604  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 593 - 627
Target Start/End: Complemental strand, 41215865 - 41215831
Alignment:
Q  593 aagaagggaacacaaagaaagggttggaaggaacc 627  Q
    |||||||||||||||||||||||||||||||||||    
T  41215865 aagaagggaacacaaagaaagggttggaaggaacc 41215831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 687
Target Start/End: Complemental strand, 41215762 - 41215713
Alignment:
Q  639 aatcatcacaaacatcga-tcctccaaaactcccgtaaacaaccattctc 687  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  41215762 aatcatcacaaacatcaaatcctccaaaactcccgtaagcaaccattctc 41215713  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 4475808 - 4475738
Alignment:
Q  521 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 591  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| ||||||||||    
T  4475808 caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta 4475738  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 521 - 591
Target Start/End: Original strand, 42740929 - 42740999
Alignment:
Q  521 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 591  Q
    ||||||||||||||| |||||||||| ||  |||||    ||||| |||||||||||||| ||||||||||    
T  42740929 caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccaccccta 42740999  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 521 - 591
Target Start/End: Original strand, 42970595 - 42970665
Alignment:
Q  521 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta 591  Q
    ||||||||||||||| |||||||||| ||  |||||  | ||||| |||||||||||||| ||||||||||    
T  42970595 caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta 42970665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 592
Target Start/End: Original strand, 33694437 - 33694508
Alignment:
Q  521 caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccacccctaa 592  Q
    ||||||||||||||| |||||||||| ||  |||||    ||||| |||||||||||||| |||||||||||    
T  33694437 caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccacccctaa 33694508  T

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