View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232-Insertion-10 (Length: 394)
Name: NF5232-Insertion-10
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 28837861 - 28837476
Alignment:
| Q |
7 |
acaaatgccaacactgcaagcggatttaagtgcaaattccgtaggaaaccagttttctgatgattttgccaagaaattag-ttgccaggtaacatcttcg |
105 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
28837861 |
acaaatgccaacactacaagcggatttaagtgcaaattccgcaggaaaccagttttctgatgattttgccaagaaattaggttgtcaggtaacatcttcg |
28837762 |
T |
|
| Q |
106 |
ttgtgaattatttccttaagattttaggatccgcatgaaaggtaaatatgcaggaaataccaattcaagaccgcacttataaataccaattcaagaccgc |
205 |
Q |
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||||||||||||| |||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28837761 |
ttgtgaattattttcttaggattttaggatccgcgggaaaggtaaatgtgtaggaaataccaattcaagaccgcacttgtaaataccaattcaagaccgc |
28837662 |
T |
|
| Q |
206 |
acttgtagccaaaggaaactgaagaaatcgcaatgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctggag |
305 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28837661 |
acttgtagccaaaggaaaccgaagaaatcgcaatgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctagag |
28837562 |
T |
|
| Q |
306 |
aaataatgccacgtctgactaagttgtcctttctcagtaatctattacacaaaacgtcaggcgcaaatagacaccttcaacggaac |
391 |
Q |
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| T |
28837561 |
aaataatgccacgtctgactaagttgtcctttctcagtaatctattacacaaaacgtcaggcgcaaatagacaccttcaacggaac |
28837476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 34756817 - 34756869
Alignment:
| Q |
111 |
aattatttccttaagattttaggatccgcatgaaaggtaaatatgcaggaaat |
163 |
Q |
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|
| T |
34756817 |
aattgtttccttaggattttaggatccgcaggaaaggtatatccgcaggaaat |
34756869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 8340468 - 8340610
Alignment:
| Q |
251 |
tgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctggagaaataatgccacgtctgactaagttgtcctttctcagtaatctat |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| || ||||||| | |
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| T |
8340468 |
tgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttatggagaaataatgtcacgtctgacaaagttgtcctttgtcggtaatctgt |
8340567 |
T |
|
| Q |
351 |
tacacaaaa--cgtcaggcgcaaatagacaccttcaacggaac |
391 |
Q |
| |
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| | ||||| |||||| | ||||| ||||||||||| ||||| |
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|
| T |
8340568 |
tgcgcaaaaggcgtcagtcacaaattgacaccttcaatggaac |
8340610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 4895750 - 4895798
Alignment:
| Q |
101 |
cttcgttgtgaattatttccttaagattttaggatccgcatgaaaggta |
149 |
Q |
| |
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|||||| || |||| |||||||| ||||||||||||||||| ||||||| |
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|
| T |
4895750 |
cttcgtggttaattgtttccttaggattttaggatccgcataaaaggta |
4895798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 19636881 - 19636775
Alignment:
| Q |
190 |
accaattcaagaccgcacttgtagccaaaggaaactgaagaaatcgcaatgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaa |
289 |
Q |
| |
|
||||||||||| ||||||||| | ||| |||||||||| |||| ||||||||||||||| ||| ||| |||||| | |||||||| ||||| |||||| |
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| T |
19636881 |
accaattcaagtccgcacttgcatccatcggaaactgaataaattgcaatgaaggaacaaatgtggagctgattctatgtgaccgcaaccactaacacaa |
19636782 |
T |
|
| Q |
290 |
aaatgat |
296 |
Q |
| |
|
||||||| |
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|
| T |
19636781 |
aaatgat |
19636775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 26991396 - 26991322
Alignment:
| Q |
239 |
tgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctggagaaataatg |
313 |
Q |
| |
|
||||||||||| || |||| ||||||||||| ||| |||||||| |||||| | |||| |||| ||||||||||| |
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|
| T |
26991396 |
tgaaggaacaaatgctgagctgattcaacttaaccccatccacttacacaatagtgattttcttgagaaataatg |
26991322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 33014096 - 33014176
Alignment:
| Q |
233 |
tcgcaatgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctggagaaataatg |
313 |
Q |
| |
|
||||| |||||||| ||||||| || ||||||||||||||| |||||| ||| ||| ||| || |||| ||| ||||||| |
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|
| T |
33014096 |
tcgcagtgaaggaataagtgttaagctgattcaacttgaccacatccattcatgcaataattattttcttgaggaataatg |
33014176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 47163393 - 47163287
Alignment:
| Q |
230 |
aaatcgcaatgaaggaacaagtgttgagttgattcaacttgaccgcatccactcacacaaaaatgatgttctggagaaataatgccacgtctgactaagt |
329 |
Q |
| |
|
|||| ||||||||||||||| || |||| |||||||| ||||||||| | || |||||||||||| |||| ||||||||| | ||||| || |||| |
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| T |
47163393 |
aaattgcaatgaaggaacaaatgctgagctgattcaatttgaccgcaacagctaccacaaaaatgataaactggtgaaataatgtcgcgtctaaccaagt |
47163294 |
T |
|
| Q |
330 |
tgtcctt |
336 |
Q |
| |
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| ||||| |
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|
| T |
47163293 |
tatcctt |
47163287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 19935219 - 19935103
Alignment:
| Q |
35 |
agtgcaaattccgtaggaaaccagttttctgatgattttgccaa--gaaattagttgccaggtaacatcttcgttgtgaattatttccttaagattttag |
132 |
Q |
| |
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|||| ||||||| |||||||| |||||||| || |||||||| ||| || ||| |||||||| | |||| | | |||| |||||||| |||||||| |
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| T |
19935219 |
agtgaaaattccttaggaaacgtgttttctgcggaatttgccaaaggaagttggttcccaggtaataccttcatgggtaattgtttccttaggattttag |
19935120 |
T |
|
| Q |
133 |
gatccgcatgaaaggta |
149 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
19935119 |
gatccgcaggaaaggta |
19935103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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