View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232-Insertion-11 (Length: 274)
Name: NF5232-Insertion-11
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232-Insertion-11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 38883906 - 38884172
Alignment:
| Q |
8 |
ctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgtg |
107 |
Q |
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| T |
38883906 |
ctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgtg |
38884005 |
T |
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| Q |
108 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatga |
207 |
Q |
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| T |
38884006 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatga |
38884105 |
T |
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| Q |
208 |
tgatggtcatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaac |
274 |
Q |
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| T |
38884106 |
tgatggttatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaac |
38884172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 38893103 - 38893349
Alignment:
| Q |
13 |
tatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgtgaatgg |
112 |
Q |
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| T |
38893103 |
tatcccttgttaccaagttgctgggacgcatatattaccatgttgatggtgccgggaagcccggtacattgccacccaatgtatcagctgcggttaatgg |
38893202 |
T |
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| Q |
113 |
tgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatgatgatg |
212 |
Q |
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| T |
38893203 |
ggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtaggaagaaagtgtatggtatgacactgatgataatg |
38893302 |
T |
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| Q |
213 |
gtcatctgttcaattggttctggtctttctttcggacacactccaaa |
259 |
Q |
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| T |
38893303 |
gtaatctgctccattggttccggcctttcttttggacacaatccaaa |
38893349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 37316106 - 37315993
Alignment:
| Q |
81 |
ttgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcagga |
180 |
Q |
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| T |
37316106 |
ttgcctccaaatgtatcagcagcagtaaatggtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaa |
37316007 |
T |
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| Q |
181 |
aaaaagtctatggt |
194 |
Q |
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| T |
37316006 |
aaaaagtttatggt |
37315993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 33115133 - 33115269
Alignment:
| Q |
108 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatga |
207 |
Q |
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| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgc |
33115232 |
T |
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| Q |
208 |
tgatggtcatctgttcaattggttctggtctttcttt |
244 |
Q |
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| T |
33115233 |
ttatggtcatagcttcacttgcttctggtctctcttt |
33115269 |
T |
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