View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232-Insertion-2 (Length: 934)

Name: NF5232-Insertion-2
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232-Insertion-2
NF5232-Insertion-2
[»] chr5 (1 HSPs)
chr5 (401-934)||(33638155-33638688)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 401 - 934
Target Start/End: Complemental strand, 33638688 - 33638155
Alignment:
Q  401 ttatgttggtttaagaagggttaggatgaatgttcatttttgtcttgctttctgatgttttcataatagtacaagtgatatgaactattggaaatgtttt 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638688 ttatgatggtttaagaagggttaggatgaatgttcatttttgtcttgctttctgatgttttcataatagtacaagtgatatgaactattggaaatgtttt 33638589  T
Q  501 gagctttcaatgcatcagatgacactattttgttgttctgggtcttgactcttgacattaaatcaaaatgcatacctatgtatactctagttagtgaatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638588 gagctttcaatgcatcagatgacactattttgttgttctgggtcttgactcttgacattaaatcaaaatgcatacctatgtatactctagttagtgaatt 33638489  T
Q  601 tgatatttttcttgcttttgtttattgatttcatgagcagctattcgtgcaagcaaaagaccgtcaacaaactatggatttctcagaaaaacaaataaag 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33638488 tgatatttttcttgcttttgtttattgatttcatgagcagctattcgtgcaagcaaaagaccgtcaacaaactatggatttctcagaaaaacaaataaag 33638389  T
Q  701 gccttagacatgatgatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagctcggtgatgacttttactc 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  33638388 gccttagacatgatgatgattgtcaacatcttctttataatatttacggctctatctctctacatcagagaggttgtaagcttggtagtgacttttactc 33638289  T
Q  801 tcgaacaaaacccattaaagtggtcactcttttgttttgttttcaccactttcttgtccctcgccatcaagttagccatgatccgtttacaaaacaagat 900  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||    
T  33638288 tcgaacaaaccccattaaagtggtcactcttttgttttgtattcaccactttcctctccctcgccatcaagctagccatgatccgtttgcaaaacaagat 33638189  T
Q  901 caatcgctacatcatactatttggaatgattctt 934  Q
    ||| |||||||||||||| || ||||||||||||    
T  33638188 caaccgctacatcatactgttgggaatgattctt 33638155  T

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