View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232-Insertion-3 (Length: 910)

Name: NF5232-Insertion-3
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232-Insertion-3
NF5232-Insertion-3
[»] chr5 (10 HSPs)
chr5 (332-872)||(35492335-35492882)
chr5 (8-182)||(35493044-35493219)
chr5 (332-460)||(32730588-32730715)
chr5 (156-283)||(31920670-31920795)
chr5 (160-311)||(32730368-32730512)
chr5 (277-332)||(35492990-35493045)
chr5 (236-326)||(39182683-39182772)
chr5 (332-391)||(31920547-31920606)
chr5 (412-461)||(31920491-31920541)
chr5 (93-140)||(29292416-29292464)
[»] chr4 (4 HSPs)
chr4 (150-333)||(21406221-21406403)
chr4 (150-251)||(37911073-37911174)
chr4 (370-445)||(32090467-32090540)
chr4 (413-458)||(37910797-37910843)
[»] chr7 (6 HSPs)
chr7 (332-457)||(47241916-47242040)
chr7 (153-323)||(44203271-44203433)
chr7 (152-291)||(9103575-9103706)
chr7 (413-461)||(9103379-9103428)
chr7 (150-199)||(47241838-47241887)
chr7 (412-458)||(44203466-44203513)
[»] chr3 (1 HSPs)
chr3 (343-461)||(23505987-23506106)
[»] chr1 (6 HSPs)
chr1 (332-397)||(19572004-19572069)
chr1 (219-303)||(41611452-41611537)
chr1 (150-287)||(46018043-46018173)
chr1 (356-463)||(24633469-24633577)
chr1 (334-396)||(46018418-46018478)
chr1 (148-198)||(41611181-41611231)
[»] chr2 (2 HSPs)
chr2 (93-140)||(24466804-24466852)
chr2 (93-140)||(4017643-4017691)
[»] chr8 (1 HSPs)
chr8 (93-140)||(35613115-35613163)


Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 332 - 872
Target Start/End: Complemental strand, 35492882 - 35492335
Alignment:
Q  332 cgctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaatcaaatgcacactnnnnnnnntt--tcttttataattttgc 429  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||            ||||||||||| ||||    
T  35492882 cgctatagtgctttttctgtttaatttttgcattactaatatatatatcgtattataaatcaaatgtacactaaaaaaaaaaaatcttttataatattgc 35492783  T
Q  430 cacaccaaaccatcattctagatccgcccctgctagcatcattgacaccatggactgttgttcagaagtcaacctatcaaaagaatcaaataagagtgaa 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35492782 cacaccaaaccatcattctagatccgcccctgctagcatcattgacaccatggactgttgttcagaagtcaacctatcaaaagaatcaaataagagtgaa 35492683  T
Q  530 gtaaattgttagtggtgagcatcaagttgcagattatggggtcaagttgcaccaattcccaatagtttagagcttttgggcagacaaagaagatgtgaat 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35492682 gtaaattgttagtggtgagcatcaagttgcagattatggggtcaagttgcaccaattcccaatagtttagagcttttgggcagacaaagaagatgtgaat 35492583  T
Q  630 ttgagttttcgccatctcttcataatacacacaattatgagcgcagggtattcctctctaaatcagccgagaacgtgtgtggaggcagccatgagctact 729  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35492582 ttgagttttcgccatctcttcataatacacacaattatcagcgcagggtattcctctctaaatcagccgagaacgtgtgtggaggcagccatgagctacc 35492483  T
Q  730 cgccaaagaaaagagcgaacatatttataaagttttgagaataattca----tgaacaatgagcagcatgacgccaaagaacgacgataccaccactata 825  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||     
T  35492482 cgccaaagaaaagagcgaacatatttataaagttttgagaataattcatgattgaacaatgagcagcatgacgccaaagaacgacgataccaccactatg 35492383  T
Q  826 gccaatacaatcaacag-aaagtggtgatcaaaaccaattaaatactt 872  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  35492382 gccaatacagtcaacagaaaagtggtgatcaaaaccaattgaatactt 35492335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 35493219 - 35493044
Alignment:
Q  8 attctgacctcgattcttatgttgttgtatacaatgcc-atccgttgagagtatatttcgcttgtcacacaatgattggagacggagaatctgaattctc 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  35493219 attctgacctcgattcttatgttgttgtatacaatgcctatccgttgagagtatatttcgctcgtcacacaatgactggagacggagaatttgaattctc 35493120  T
Q  107 cacaacttagaattacggtttttccacaatctccctagcatctaggggcggatctagtgttagccatggtgtggca 182  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  35493119 cacaatttagaattacggtttttccacaatctccctagcatccaagggcggatctagtgttaggcatggtgtggca 35493044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 332 - 460
Target Start/End: Original strand, 32730588 - 32730715
Alignment:
Q  332 cgctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaatcaaatgcacactnnnnnnnntttcttttataattttgcca 431  Q
    |||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||||    
T  32730588 cgctattgtactttttctgtttaattttcgcattactaatatatatatcgtattataaatcaaatgtacact--taaaattttcttttataattttgcca 32730685  T
Q  432 caccaaaccatcat-tctagatccgcccct 460  Q
    || ||||||||||| |||||||||||||||    
T  32730686 catcaaaccatcatgtctagatccgcccct 32730715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 31920795 - 31920670
Alignment:
Q  156 ggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataatattata 255  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||||||| || || |||||||| || |||||| ||||||||||||||| ||||    
T  31920795 ggatctaatgttaggcatggtgtggcagctgccacaccaaattacagtccaatt-ttttttttttttatcaatatagtagaccgaaaagataata-tata 31920698  T
Q  256 ttacataattggacgatgtttcacaaat 283  Q
    | |||||||| ||| |||||||||||||    
T  31920697 tcacataattagacaatgtttcacaaat 31920670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 160 - 311
Target Start/End: Original strand, 32730368 - 32730512
Alignment:
Q  160 ctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataatattatattac 259  Q
    |||||||||| ||||||||||||||||   ||| ||||||||  |||||| ||      |||||| || ||||||||||||||| ||||||| |||||||    
T  32730368 ctagtgttaggcatggtgtggcagctgttccactagattacaacccaattttt------ttttatcaatatagtacaccgaaaaaataatat-atattac 32730460  T
Q  260 ataattggacgatgtttcacaaatcaatgtgtagtctagtggtaaatagtcc 311  Q
    |||||||||| || ||| ||||||||||| || ||| ||||||| |||||||    
T  32730461 ataattggacaatattttacaaatcaatgcgtggtccagtggtagatagtcc 32730512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 35493045 - 35492990
Alignment:
Q  277 cacaaatcaatgtgtagtctagtggtaaatagtcctttatttatagtcacgtccac 332  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  35493045 cacaaatcaatgtgtggtccagtggtagatagtcctttatttatagtcacgtccac 35492990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 39182772 - 39182683
Alignment:
Q  236 accgaaaagataatattatattacataattggacgatgtttcacaaatcaatgtgtagtctagtggtaaatagtcctttatttatagtcac 326  Q
    |||||||||||||||| |||| | |||||||||| |||||||||||||||||| || || | |||||| |||||||||||| || ||||||    
T  39182772 accgaaaagataatat-atatcatataattggacaatgtttcacaaatcaatgcgtggtttggtggtagatagtcctttatctaaagtcac 39182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 332 - 391
Target Start/End: Complemental strand, 31920606 - 31920547
Alignment:
Q  332 cgctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaat 391  Q
    |||||||||| ||||||  ||||| ||| ||||||||||||||||||| |||||||||||    
T  31920606 cgctatagtgttttttccgtttaactttcgcattactaatatatatattgtattataaat 31920547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 31920541 - 31920491
Alignment:
Q  412 tttcttttataattttgccacaccaaaccatcat-tctagatccgcccctg 461  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  31920541 tttcttttataattttgtcacaccaaaccattatgtctagatccgcccctg 31920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 29292464 - 29292416
Alignment:
Q  93 gaatctgaattctcc-acaacttagaattacggtttttccacaatctcc 140  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  29292464 gaatctgaattctcccacaacttagaattacgatttttccacaagctcc 29292416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 150 - 333
Target Start/End: Complemental strand, 21406403 - 21406221
Alignment:
Q  150 aggggcggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaa--ttattattattttttatgaaaatagtacaccgaaaagata 247  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||  || || || |||||||| || ||||||  | |||||||||    
T  21406403 aggggcggatctagtgttaggcatggtgtggcagctgccacactagattacagcccaatttttttttttttttttattaatatagtaggctgaaaagata 21406304  T
Q  248 atattatattacataattggacgatgtttcacaaatcaatgtgtagtctagtggtaaatagtcctttatttatagtcacgtccacg 333  Q
    |   ||||| |||||||||||| ||||||||||||||| ||||| ||| ||||||| || ||| ||||| ||||||||||||||||    
T  21406303 a---tatatcacataattggacaatgtttcacaaatcattgtgtggtccagtggtagattgtcttttatctatagtcacgtccacg 21406221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 37911174 - 37911073
Alignment:
Q  150 aggggcggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataat 249  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||| || || ||| ||||  | |||||| ||||||||||||||    
T  37911174 aggggcggatctagtgttaggcgtggtgtggcagctgtcacaccagattacagcccaattttttttttttattattgatatagtagaccgaaaagataat 37911075  T
Q  250 at 251  Q
    ||    
T  37911074 at 37911073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 32090540 - 32090467
Alignment:
Q  370 atatatatatcgtattataaatcaaatgcacactnnnnnnnntttcttttataattttgccacaccaaaccatcat 445  Q
    |||||||||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||    
T  32090540 atatatatatcgtattataaatcaaatgtacactaaatag--tttcttttataattttgccacaccaaaccatcat 32090467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 37910843 - 37910797
Alignment:
Q  413 ttcttttataattttgccacaccaaaccatcat-tctagatccgccc 458  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  37910843 ttcttttataattttgccacaccaaaccatcatgtctagatccgccc 37910797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 332 - 457
Target Start/End: Original strand, 47241916 - 47242040
Alignment:
Q  332 cgctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaatcaaatgcacactnnnnnnnntttcttttataattttgcca 431  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||||    
T  47241916 cgctatagtgctttttctgtttaattttcacattactaatatatatatcgtattataaatcaaatgtacact--taaaattttcttttataattttgcca 47242013  T
Q  432 caccaaaccatcat-tctagatccgcc 457  Q
    |||||||||||||| ||||||||||||    
T  47242014 caccaaaccatcatatctagatccgcc 47242040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 44203271 - 44203433
Alignment:
Q  153 ggcggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataatatt 252  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||       |||||||| || |||||| ||||||||||||||||     
T  44203271 ggcggatctagtgttaggcatggtatggcagctgccacactagattacagtccattt-------ttttttattaatatagtagaccgaaaagataatat- 44203362  T
Q  253 atattacataattggacgatgtttcacaaatcaatgtgtagtctagtggtaaatagtcctttatttatagt 323  Q
    |||| |||||||||||| |||||||||||||||||| || ||| ||||||| ||| | |||||| ||||||    
T  44203363 atatcacataattggacaatgtttcacaaatcaatgcgtggtccagtggtagataattctttatctatagt 44203433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 152 - 291
Target Start/End: Complemental strand, 9103706 - 9103575
Alignment:
Q  152 gggcggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataatat 251  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||       |||||  | || |||||| |||||||| ||||||     
T  9103706 gggcggatctagtgttaggcatggtgtggcagctgccacaccagattacagccaaatt-------tttttagttaatatagtagaccgaaaacataata- 9103615  T
Q  252 tatattacataattggacgatgtttcacaaatcaatgtgt 291  Q
    ||||| |||||||| ||| ||||||||||||| |||||||    
T  9103614 tatatcacataatttgacaatgtttcacaaattaatgtgt 9103575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 9103428 - 9103379
Alignment:
Q  413 ttcttttataattttgccacaccaaaccatcat-tctagatccgcccctg 461  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9103428 ttcttttataattttgccacatcaaaccatcatatctagatccgcccctg 9103379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 47241838 - 47241887
Alignment:
Q  150 aggggcggatctagtgttagccatggtgtggcagctgccacaccagatta 199  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  47241838 aggggcggatttagtgttaggcatggtgtggcagctgccccaccagatta 47241887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 44203466 - 44203513
Alignment:
Q  412 tttcttttataattttgccacaccaaaccatcat-tctagatccgccc 458  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  44203466 tttcttttacaattttgccacactaaaccatcatgtctagatccgccc 44203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 343 - 461
Target Start/End: Complemental strand, 23506106 - 23505987
Alignment:
Q  343 tttttctatttaatttttgcattactaa--tatatatatcgtattataaatcaaatgcacactnnnnnnnntttcttttataattttgccacaccaaacc 440  Q
    ||||||| |||| |||| ||||||||||  ||||||||||||||||||||| ||||| |||||        ||||||||||||||||||||||| |||||    
T  23506106 tttttctgtttagttttcgcattactaaaatatatatatcgtattataaattaaatgtacactgaacaa--tttcttttataattttgccacactaaacc 23506009  T
Q  441 atcat-tctagatccgcccctg 461  Q
    ||||| ||||||||||||||||    
T  23506008 atcatatctagatccgcccctg 23505987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 19572004 - 19572069
Alignment:
Q  332 cgctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaatcaaatg 397  Q
    ||||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  19572004 cgctacagtgctttttatgtttaattttcgcattactaatatatatatcgtattataaatcaaatg 19572069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 41611452 - 41611537
Alignment:
Q  219 ttttatgaaaatagtacaccgaaaagataatat-tatattacataattggacgatgtttcacaaatcaatgtgtagtctagtggta 303  Q
    |||||| || |||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||| |||||||||||    
T  41611452 ttttattaatatagtaaaccgaaaagataatatatatatcacataattggacaatgtttcacaaataaatgtgtggtctagtggta 41611537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 287
Target Start/End: Original strand, 46018043 - 46018173
Alignment:
Q  150 aggggcggatctagtgttagccatggtgtggcagctgccacaccagattacagtccaattattattattttttatgaaaatagtacaccgaaaagataat 249  Q
    ||||||||||||||||||||  |||||||||  ||||||| || ||||||||  ||      | || |||||||| || |||||| ||||||||||||||    
T  46018043 aggggcggatctagtgttaggtatggtgtggtggctgccatactagattacaaccc------tttttttttttattaatatagtagaccgaaaagataat 46018136  T
Q  250 attatattacataattggacgatgtttcacaaatcaat 287  Q
    || ||||||||||||||||| ||||||||| |||||||    
T  46018137 at-atattacataattggacaatgtttcactaatcaat 46018173  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 463
Target Start/End: Complemental strand, 24633577 - 24633469
Alignment:
Q  356 tttttgcattactaatatatatat--cgtattataaatcaaatgcacactnnnnnnnntttcttttataattttgccacaccaaaccatcat-tctagat 452  Q
    |||| |||||||||||||||||||  |||||||||||||||||| |||||         || |||||||||||||||||||||||||||||| ||||| |    
T  24633577 ttttcgcattactaatatatatatatcgtattataaatcaaatgtacactaaattgg--ttgttttataattttgccacaccaaaccatcatgtctaggt 24633480  T
Q  453 ccgcccctgct 463  Q
    |||||||||||    
T  24633479 ccgcccctgct 24633469  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 46018418 - 46018478
Alignment:
Q  334 ctatagtgctttttctatttaatttttgcattactaatatatatatcgtattataaatcaaat 396  Q
    ||||||| |||||| ||||||||||| |||||||||  |||||||| ||||||||||||||||    
T  46018418 ctatagtactttttatatttaattttcgcattacta--atatatattgtattataaatcaaat 46018478  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 41611181 - 41611231
Alignment:
Q  148 ctaggggcggatctagtgttagccatggtgtggcagctgccacaccagatt 198  Q
    |||||||| ||||||||||||| ||| ||||||  ||||||||||||||||    
T  41611181 ctaggggcagatctagtgttaggcatagtgtggtggctgccacaccagatt 41611231  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 24466852 - 24466804
Alignment:
Q  93 gaatctgaattctcc-acaacttagaattacggtttttccacaatctcc 140  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24466852 gaatctgaattctcccacaacttagaattacggtttttccacaagctcc 24466804  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 4017643 - 4017691
Alignment:
Q  93 gaatctgaattctcc-acaacttagaattacggtttttccacaatctcc 140  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  4017643 gaatctgaattctcccacaacttagaattacgatttttccacaagctcc 4017691  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 35613163 - 35613115
Alignment:
Q  93 gaatctgaattctcc-acaacttagaattacggtttttccacaatctcc 140  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  35613163 gaatctgaattctcccacaacttagaattacgatttttccacaagctcc 35613115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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