View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5232-Insertion-6 (Length: 810)
Name: NF5232-Insertion-6
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 8 - 806
Target Start/End: Original strand, 31629496 - 31630294
Alignment:
| Q |
8 |
aattttacaccgactttacttcaaacttcccttgagaatgagattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgttc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31629496 |
aattttacaccgactttacttcaaacttcccttgagaatgagattgtctaaatataaatcacttatttcaaaatcgattataaccaaatgaattatgtcc |
31629595 |
T |
|
| Q |
108 |
caaatcacaaaatatttacccaaacacacctaatcaaaccaaactagctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaatn |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629596 |
caaatcacaaaatatttacccaaacacacctaatcaaaccaaactagctatttgtggtttaagaaatgtttcaatatattatcaatgagggaaacaaata |
31629695 |
T |
|
| Q |
208 |
nnnnnnntaaacacatgctaagatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgc |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629696 |
aaaaaaataaacacatgctaagatggattgatcattgatgtctttgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgc |
31629795 |
T |
|
| Q |
308 |
ttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629796 |
ttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaa |
31629895 |
T |
|
| Q |
408 |
tcatctgttgttgataatgaaacaggaaagagtagggacagcaggttagnnnnnnnnnnnnncgaccaaaaattctttagcaagttccctctaagttcag |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
31629896 |
tcatctgttgttgataatgaaacaggaaagagtaaggacagcaggttagtttttttatttttcaaccaaaaattatttagcaagttccctctaagttcag |
31629995 |
T |
|
| Q |
508 |
tgttgaatattataaatcttgttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcatttagcgtacgaacaa |
607 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629996 |
tgttgaatattataaatcttgtttgccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcatttagcgtacgaacaa |
31630095 |
T |
|
| Q |
608 |
gctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgtgtaacacgt |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31630096 |
gctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgcgtaacacgt |
31630195 |
T |
|
| Q |
708 |
tctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgtattaacggcgtgttttctg |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31630196 |
tctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgtattaaccaagtgttttctg |
31630294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 591 - 804
Target Start/End: Original strand, 31656424 - 31656637
Alignment:
| Q |
591 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
690 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31656424 |
atttagcatacgaacaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacct |
31656523 |
T |
|
| Q |
691 |
gtaggtgtgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgtatt |
790 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
31656524 |
gtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctagtgctttttgattcaaccatgtatc |
31656623 |
T |
|
| Q |
791 |
aacggcgtgttttc |
804 |
Q |
| |
|
|||| |||||||| |
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|
| T |
31656624 |
aacgaagtgttttc |
31656637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 518 - 700
Target Start/End: Original strand, 31637270 - 31637458
Alignment:
| Q |
518 |
tataaatcttgttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctc |
611 |
Q |
| |
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||||||||| |||| || |||||| ||| |||||| ||||||||| ||| ||||||||| ||||||||| |||||||| | |||||||||||| |
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| T |
31637270 |
tataaatctcgtttaccatgtttaaatttccattgccacttcattcatgtcaaaccttttgcttacatatttcttttgcatttagtgcacgaacaagctc |
31637369 |
T |
|
| Q |
612 |
tggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgtgt |
700 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31637370 |
tggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgtgt |
31637458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 548 - 697
Target Start/End: Original strand, 31646137 - 31646292
Alignment:
| Q |
548 |
cattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatga |
641 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||| | |||||||| |||| | |
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| T |
31646137 |
cattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataa |
31646236 |
T |
|
| Q |
642 |
aattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtg |
697 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31646237 |
aattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtg |
31646292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 591 - 700
Target Start/End: Original strand, 31651645 - 31651754
Alignment:
| Q |
591 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
690 |
Q |
| |
|
|||||| | ||| |||||||||||| |||||||| | |||||| ||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
31651645 |
atttagggaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacct |
31651744 |
T |
|
| Q |
691 |
gtaggtgtgt |
700 |
Q |
| |
|
|||||||||| |
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|
| T |
31651745 |
gtaggtgtgt |
31651754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 252 - 436
Target Start/End: Original strand, 31651342 - 31651522
Alignment:
| Q |
252 |
tgtttaattaaagttcaaggttaattccctaatatatactattaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagc |
351 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||| ||||| | |||||||||||| |||||||||| |||||| ||||||| | ||||||||||| ||| |
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|
| T |
31651342 |
tgtttaattatagttcagggttaatcccctaa-atatagttttaatgttacaaat-ttccatttcctaaatgc-taaggcta-agctgattgatctgagc |
31651437 |
T |
|
| Q |
352 |
agacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
436 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||| |||||||| ||||| ||||| |||| | ||||||||||| |
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|
| T |
31651438 |
agacaaaagaggaatgtgaacatctaatcaatatagcaaagcctagtatgcataaatcggctgttattgacgaggaaacaggaaa |
31651522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 456
Target Start/End: Original strand, 31646008 - 31646124
Alignment:
| Q |
337 |
ctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaa |
436 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||| | |||||| ||||||| ||||| |
|
|
| T |
31646008 |
ctgattgatctaagcagacaaaagaggaatgtgaacatctaatcaatatagccaagcctagtatgcataaatcgac---tgttgacgatgaaacgggaaa |
31646104 |
T |
|
| Q |
437 |
gagtagggacagcaggttag |
456 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
31646105 |
gagtgtggacaacaggttag |
31646124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 31656156 - 31656269
Alignment:
| Q |
293 |
ttaatgttacaatgcttccatttcccaaatgcctaaggctttatctgattgatctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaag |
392 |
Q |
| |
|
|||||||||||| | |||||||||| |||||| ||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||| |
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|
| T |
31656156 |
ttaatgttacaa-gtttccatttcctaaatgc-taaggctaaa-ctgattgatctgagcagacaaaagaggaatgcgaacatctaatcaatatagcaaag |
31656252 |
T |
|
| Q |
393 |
ccaagtatgcaaaaatc |
409 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
31656253 |
cctagtatgcataaatc |
31656269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 344 - 456
Target Start/End: Original strand, 31637098 - 31637210
Alignment:
| Q |
344 |
atctaagcagacaaagaaggaatgtgaacatctaatcaatacagccaagccaagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtagg |
443 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||| ||||||||| | |||| ||||| ||||||||||| || ||||||||||||| | |
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|
| T |
31637098 |
atcttagcaggcaaaagaggaatgtgaacatctaatcaatatagccaagcctgatgtgcagaaatcgactgttgttgatgatacaacaggaaagagtgtg |
31637197 |
T |
|
| Q |
444 |
gacagcaggttag |
456 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31637198 |
aacagcaggttag |
31637210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 607 - 696
Target Start/End: Complemental strand, 9105543 - 9105454
Alignment:
| Q |
607 |
agctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggt |
696 |
Q |
| |
|
||||||||||| ||||| | ||| ||| ||||| | |||||||||||||||||||||| ||| || || ||||||||||| ||||||||| |
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| T |
9105543 |
agctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt |
9105454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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