View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232-Insertion-9 (Length: 613)
Name: NF5232-Insertion-9
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232-Insertion-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Original strand, 37437974 - 37438583
Alignment:
| Q |
8 |
tattgcttatggcttcttcttcggtgatcactcccgaagatgtgttagagtcgctgatgaacgacggaacaattgatgctcttaggttgaagatcatcaa |
107 |
Q |
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| T |
37437974 |
tattgcttatggcttcttcttcggtgatcactcccgaagatgtgttagagtcgctgatgaacgacggaacaattgatgctcttaggttgaagatcatcaa |
37438073 |
T |
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| Q |
108 |
tcagctcaaagccaatgtagtttctaccctccttttttccgattttattgttctctatttttc-agtgccaattagtttgtgatttttgtaaattataat |
206 |
Q |
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| T |
37438074 |
tcagctcaaagccaatgtagtttctaccctccttttttccaattttattgttctctatttttctggtgctaattagtttgtgatttttgtaaattataat |
37438173 |
T |
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| Q |
207 |
aggtttaaatata-ttttagtcttgtgcaattataacgttttctttggtggtgtaagnnnnnnnattttgataaaattagtcttgtagattaaaaaattg |
305 |
Q |
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| T |
37438174 |
aggtttaaatatacttttagtcttgtgcaattataacgttttctttggtggtgtaagtttttttattttgataaaattagtcttgtatattaaaaaattg |
37438273 |
T |
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| Q |
306 |
ttggttttagtctgacatgtcccaataaaatcacgccacatgtccacatgtcgaaaaagcannnnnnnnnnctttccaatttgtgaatttg-aacnnnnn |
404 |
Q |
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| T |
37438274 |
ttggttttagtctgacatgtcccaataaaatcacgccacatgtccacatgtcgaaaaagcattttttttttctttccaatttgtgaatttgaaaaaaaaa |
37438373 |
T |
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| Q |
405 |
nnncatacaacacaataacactataattgtagggactaaaattatatttaaaccgttataattaagaggggtttggtgtttgacacgtggaagctacaat |
504 |
Q |
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| T |
37438374 |
aaacatacaacacaataacactatagttgtagggactaaaattatatttaaaccgttataattaagaggggtttggtgttcgacacgtggaagctacagt |
37438473 |
T |
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| Q |
505 |
taaattcaattactttagctaagttggcaagatccggggtttaaatcccggccacc-nnnnnnnnnnnnttcaattacattcactttctcaaattattat |
603 |
Q |
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| T |
37438474 |
taaattcaattactttagctaagttggcaaggtccggggtttaaatcccggccaccaaaaaaaaaaaaattcaattacattcactttctcaaattattat |
37438573 |
T |
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| Q |
604 |
cagagtagtg |
613 |
Q |
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| T |
37438574 |
cagagtagtg |
37438583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 22159582 - 22159618
Alignment:
| Q |
421 |
aacactataattgtagggactaaaattatatttaaac |
457 |
Q |
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| T |
22159582 |
aacactataattgtagggactaaagtcatatttaaac |
22159618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 22218290 - 22218326
Alignment:
| Q |
421 |
aacactataattgtagggactaaaattatatttaaac |
457 |
Q |
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| T |
22218290 |
aacactataattgtagggactaaagtcatatttaaac |
22218326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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