View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_high_10 (Length: 324)
Name: NF5232_high_10
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 55420723 - 55421028
Alignment:
| Q |
1 |
aggctatttttctatcattattattacatgatgcagttaactaagctagcaatgaatcctcaacagcatgtttaagccatctcctatataccatgtctta |
100 |
Q |
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| T |
55420723 |
aggctatttttctatcattattattacatgatgcagttaactaagctagcaatgaatcctcaacagcatgtttaagccatctcctatataccatgtctaa |
55420822 |
T |
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| Q |
101 |
taataggaattccataaaaaacagtgatgaatatcgattaccaaaatagaacagaaaaggaagtctaagtttatatatattcttgtttaccttgttgtca |
200 |
Q |
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| T |
55420823 |
taataggaattccataaaaaacagtgatgaatatcgattaccaaaatagaacagaaaaggaagtctaagtttatatatattcttgtttaccttgttgtca |
55420922 |
T |
|
| Q |
201 |
atgtcatctagtaagtgctatattgcttcaactatgtttgcttttatttagcatattttaatttagttgatgaactcacctaagcaacatatatggctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55420923 |
atgtcatctagtaagtgctatattgcttcaactatgtttgcttttatttagcatattttaatttagttgatgaactcacctaagcaacatatatggctga |
55421022 |
T |
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| Q |
301 |
actcac |
306 |
Q |
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|||||| |
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| T |
55421023 |
actcac |
55421028 |
T |
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