View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5232_high_15 (Length: 285)
Name: NF5232_high_15
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 28778544 - 28778289
Alignment:
| Q |
7 |
ggagcagagaatagtttggtgtttggtttggagtgaattaaacgacgtcgttttgagaatgaaattcaaagtgtgtactgtttttgttgataaaagttgg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28778544 |
ggagaagagaatagtttggtgtttggtttggagtgaattaaacgacgtcgttttgagaatgaaattcaaagtgtgtactgtttttgttgataaaagttgg |
28778445 |
T |
|
| Q |
107 |
tttagttgataaaaaggtgactaattctcgacaaagatatgagttcgattcttgtggtcgatataaaaatctttgttagataatctatatgtatacatag |
206 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28778444 |
tttagttgataagaaggtgactaattttcgacaaagatgtaagttcaattcttgtggtcgatgtaaaaatctttgttagataatctatatgtatacatag |
28778345 |
T |
|
| Q |
207 |
aaaagttctttgaggcttgagatttgttctaactctaataaactcaaaactcaact |
262 |
Q |
| |
|
||||| ||| ||||| ||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
28778344 |
aaaagatctatgaggtttgagatttgtcctgactttaataaactcaaaactcaact |
28778289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University