View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_high_32 (Length: 216)
Name: NF5232_high_32
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 4959317 - 4959492
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
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| T |
4959317 |
caaatacctcattatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
4959416 |
T |
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| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcatctca |
194 |
Q |
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| T |
4959417 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctca |
4959492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 18194188 - 18194013
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
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| T |
18194188 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcac |
18194089 |
T |
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| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcatctca |
194 |
Q |
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| T |
18194088 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctca |
18194013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 1182209 - 1182082
Alignment:
| Q |
27 |
tcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaa |
126 |
Q |
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|||||||| ||||||||||||| ||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| |||||||||| |
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| T |
1182209 |
tcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaa |
1182110 |
T |
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| Q |
127 |
tccatttaacatcaatggttttcttctt |
154 |
Q |
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| T |
1182109 |
ttcatttcacatcaatggttttcttctt |
1182082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 32369351 - 32369526
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||| || | ||| ||||| ||||||||||||| |
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| T |
32369351 |
caaatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcac |
32369450 |
T |
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| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcatctca |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||| | || ||||| ||||||||| ||||| |
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| T |
32369451 |
tttgaaaatccatttaacatcaatggttttcttcttatcatgtaactcatctaggttccacgtgttattcttctca |
32369526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8169772 - 8169820
Alignment:
| Q |
106 |
gattcaatttcaccttgaaaatccatttaacatcaatggttttcttctt |
154 |
Q |
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|||||||||| || |||||||||||||| |||| |||| |||||||||| |
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| T |
8169772 |
gattcaatttgactttgaaaatccatttcacattaatgtttttcttctt |
8169820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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