View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5232_high_7 (Length: 378)
Name: NF5232_high_7
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 4959317 - 4959676
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4959317 |
caaatacctcattatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
4959416 |
T |
|
| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgatttcttcagtcatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4959417 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgatttcttcagtcatg |
4959516 |
T |
|
| Q |
219 |
gctttcttccatacttcaatttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcacat |
318 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4959517 |
gctttgttccatacttcagtttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcacag |
4959616 |
T |
|
| Q |
319 |
cactatcatatagcaactcacagtcttccaatctattagggggttgcctgcttctctgtg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
4959617 |
cactatcatatagcaactcacagtcttccaatctattaggggcttgcctgtttctttgtg |
4959676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 18194188 - 18193840
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
18194188 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcac |
18194089 |
T |
|
| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgatttcttcagtcatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
18194088 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagatttgatttctttagtcatg |
18193989 |
T |
|
| Q |
219 |
gctttcttccatacttcaatttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcacat |
318 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18193988 |
actttcttccatacttcagtttgtattacttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcacctttatcattcacaa |
18193889 |
T |
|
| Q |
319 |
cactatcatatagcaactcacagtcttccaatctattagggggttgcct |
367 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18193888 |
cattatcagatagcaactcacagtcttccaatctattaggggcttgcct |
18193840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 346
Target Start/End: Complemental strand, 1182209 - 1181890
Alignment:
| Q |
27 |
tcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaa |
126 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| |||||||||| |
|
|
| T |
1182209 |
tcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaa |
1182110 |
T |
|
| Q |
127 |
tccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgatttcttcagtcatggctttctt |
226 |
Q |
| |
|
| ||||| |||||||||||||||||||| || | || ||||| | || | |||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
1182109 |
ttcatttcacatcaatggttttcttcttctctgataattcaactaattcacgggtgttattcttctcaatagctttgatttcttgtatcataccttttct |
1182010 |
T |
|
| Q |
227 |
ccatacttcaatttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcacatcactatca |
326 |
Q |
| |
|
|||||| | ||||| |||||||||||||| || || ||||| |||| || ||| |||||||| ||||||| || | |||||||||||| |||||||| |
|
|
| T |
1182009 |
ccatacacctatttgcattgcttctttgtaattaagtggttcagcatgaggtagaaatgcaaagtgaatgaactctcgttcatcattcactacactatca |
1181910 |
T |
|
| Q |
327 |
tatagcaactcacagtcttc |
346 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
1181909 |
ggtagcacctcacagtcttc |
1181890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 37788346 - 37788417
Alignment:
| Q |
245 |
tgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcac |
316 |
Q |
| |
|
|||||||||||| || | ||||| |||| |||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
37788346 |
tgcttctttgtaattaattggttcagcatatgctaataatgcaaaatgaatgagatcaccttcttcattcac |
37788417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 32369351 - 32369658
Alignment:
| Q |
19 |
caaatacctcattatagtcaacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||| || | ||| ||||| ||||||||||||| |
|
|
| T |
32369351 |
caaatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcac |
32369450 |
T |
|
| Q |
119 |
cttgaaaatccatttaacatcaatggttttcttcttatcaggtagctcaacaagtttccaggtgttattcttctcaatagctttgatttcttcagtcatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| | || ||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
32369451 |
tttgaaaatccatttaacatcaatggttttcttcttatcatgtaactcatctaggttccacgtgttattcttctcaatagtcttgatttcttcaatcata |
32369550 |
T |
|
| Q |
219 |
gctttcttccatacttcaatttgtattgcttctttgtagtttagaggttctgcatcagctagtaatgcaaaatgaatgagttcaccttcatcattcacat |
318 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||||| || ||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| || |
|
|
| T |
32369551 |
gctttcctccatacttcattttgaattgcttctttgtaattaagaggttatgcattagctaataaagcaaaatgaatgagttcaccttcatcatttactg |
32369650 |
T |
|
| Q |
319 |
cactatca |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
32369651 |
cactatca |
32369658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8169772 - 8169820
Alignment:
| Q |
106 |
gattcaatttcaccttgaaaatccatttaacatcaatggttttcttctt |
154 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| |||| |||||||||| |
|
|
| T |
8169772 |
gattcaatttgactttgaaaatccatttcacattaatgtttttcttctt |
8169820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 18646905 - 18646945
Alignment:
| Q |
276 |
gctagtaatgcaaaatgaatgagttcaccttcatcattcac |
316 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
18646905 |
gctaataatgcaaaatgaatgagatcaccttcttcattcac |
18646945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 5723135 - 5723175
Alignment:
| Q |
276 |
gctagtaatgcaaaatgaatgagttcaccttcatcattcac |
316 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
5723135 |
gctaataatgcaaaatgaatgagatcaccttcttcattcac |
5723175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University