View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_11 (Length: 314)
Name: NF5232_low_11
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 2748805 - 2748682
Alignment:
| Q |
20 |
gcagtttcattcgccgctgaacgttctcttcattgtcttggcaactttcttaagaagaaaagccaaaaaccactttatcaagccctacagaaaattaaag |
119 |
Q |
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| T |
2748805 |
gcagtttcattcgccgctgaatgttctcttcattgtcttggcaactttcttaagaagaaaaaccaaaaaccactttatcaagccctacagaaaattaaag |
2748706 |
T |
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| Q |
120 |
aaggttatttataataatgaccta |
143 |
Q |
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| T |
2748705 |
aaggttatttataataatgaccta |
2748682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 2748603 - 2748521
Alignment:
| Q |
222 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatga |
304 |
Q |
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| T |
2748603 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatga |
2748521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 2756867 - 2756765
Alignment:
| Q |
23 |
gtttcattcgccgctgaacgttctcttcattgtcttggcaactttcttaagaagaaaagccaaaaaccactttatcaagccctacagaaaattaaagaag |
122 |
Q |
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| T |
2756867 |
gtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaaatcagaaaccactctttgaagccttacaaaaaatcaaagaag |
2756768 |
T |
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| Q |
123 |
gtt |
125 |
Q |
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| T |
2756767 |
gtt |
2756765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 2756660 - 2756584
Alignment:
| Q |
222 |
gcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcc |
298 |
Q |
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| T |
2756660 |
gcagagttgatgattttgggttttatttcactgtttctaacggtaacacaaaatgggatgataaaaatttgtgttcc |
2756584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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