View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_12 (Length: 305)
Name: NF5232_low_12
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 93 - 305
Target Start/End: Original strand, 45211401 - 45211613
Alignment:
| Q |
93 |
gattaagagttattatatattgaaccactcagatcatgcttcaattgtcgaatctttgacttgaagagtgtgataagaatctcatatttgatgaaataaa |
192 |
Q |
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| T |
45211401 |
gattaagagttattagatattggaccactcagatcatgctttaattgtcgaatctttgatttgaagagtgtgataagaatctcatatttgatgagataaa |
45211500 |
T |
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| Q |
193 |
atttaaaaatgtgttaataaatgacagcggcccttgtaagaattgagttaagttaaacacaaattctaaaaatccgagtaacgtaggtcaagaatattgg |
292 |
Q |
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| T |
45211501 |
atttaaaaatgtgttaataaatgagagcggcccttgtaaaaattgagttaagttaaacacaaattctaaaaatccgagtaacgtaggtcaagaatattgg |
45211600 |
T |
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| Q |
293 |
agtacttcctcgt |
305 |
Q |
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| T |
45211601 |
agtacttcctcgt |
45211613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 45211325 - 45211370
Alignment:
| Q |
18 |
aaagagtcactttggtaagtatgtgttgggtctaatataaaaattc |
63 |
Q |
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| T |
45211325 |
aaagggtcactttgctaagtatgtgttgggtctaatataaaaattc |
45211370 |
T |
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