View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232_low_17 (Length: 281)

Name: NF5232_low_17
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232_low_17
NF5232_low_17
[»] chr2 (6 HSPs)
chr2 (150-266)||(45414725-45414841)
chr2 (18-151)||(13067122-13067255)
chr2 (50-150)||(15930901-15931001)
chr2 (55-152)||(40915477-40915574)
chr2 (99-152)||(4814602-4814654)
chr2 (99-152)||(9059899-9059951)
[»] chr4 (4 HSPs)
chr4 (18-152)||(42998604-42998738)
chr4 (18-152)||(42999197-42999331)
chr4 (55-152)||(50232993-50233090)
chr4 (42-152)||(43605582-43605691)
[»] chr5 (4 HSPs)
chr5 (37-152)||(29632579-29632694)
chr5 (18-151)||(21654547-21654680)
chr5 (17-151)||(21011979-21012109)
chr5 (42-83)||(10641659-10641700)
[»] chr8 (1 HSPs)
chr8 (42-149)||(5242660-5242766)
[»] scaffold0421 (1 HSPs)
scaffold0421 (50-151)||(4569-4670)
[»] chr1 (3 HSPs)
chr1 (42-150)||(39179965-39180073)
chr1 (18-149)||(48538558-48538689)
chr1 (55-152)||(24535404-24535501)
[»] chr7 (3 HSPs)
chr7 (42-152)||(18478629-18478739)
chr7 (62-152)||(18418404-18418494)
chr7 (98-152)||(23485479-23485532)
[»] chr6 (4 HSPs)
chr6 (42-153)||(7015463-7015574)
chr6 (42-148)||(5169674-5169780)
chr6 (122-150)||(907778-907806)
chr6 (99-147)||(8609491-8609539)
[»] chr3 (11 HSPs)
chr3 (55-151)||(32793231-32793327)
chr3 (55-151)||(50833604-50833700)
chr3 (55-151)||(50842153-50842249)
chr3 (99-152)||(50833759-50833812)
chr3 (99-152)||(50833824-50833877)
chr3 (99-152)||(50841976-50842029)
chr3 (99-152)||(50842041-50842094)
chr3 (34-146)||(16980972-16981083)
chr3 (42-151)||(40166578-40166686)
chr3 (99-148)||(50717211-50717259)
chr3 (99-148)||(50795589-50795637)
[»] scaffold0246 (1 HSPs)
scaffold0246 (97-147)||(11383-11433)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 45414841 - 45414725
Alignment:
Q  150 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagaggaaggaccacaatacatagtaatc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45414841 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagagaaaggaccacaatacatagtaatc 45414742  T
Q  250 aagaatctaagctggat 266  Q
    |||||||||||||||||    
T  45414741 aagaatctaagctggat 45414725  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 13067122 - 13067255
Alignment:
Q  18 ttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtg 117  Q
    |||| |||||||| ||||||||||| ||  ||||||||||||||||| ||||||  ||||||||| |  || |||| | |||||||||||| ||||||||    
T  13067122 ttttgaaattcatttggtggaatattgaaagaattttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaagtg 13067221  T
Q  118 tttgcagacctaataacattaaggagtaagggat 151  Q
     ||||  |||||||||||||||||||||||||||    
T  13067222 attgctaacctaataacattaaggagtaagggat 13067255  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 15930901 - 15931001
Alignment:
Q  50 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 149  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||||||||||| ||||| |||||||| |||||||||||||||||| ||||||    
T  15930901 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggg 15931000  T
Q  150 a 150  Q
    |    
T  15931001 a 15931001  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 40915477 - 40915574
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||| ||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 40915574  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 4814654 - 4814602
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  4814654 aaatctttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 4814602  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 9059899 - 9059951
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||| |||||||  ||||| ||||||||| ||||||||||||||||||    
T  9059899 aaatttttagggttaagttgttgca-acctaataagattaaggagtaagggata 9059951  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 42998604 - 42998738
Alignment:
Q  18 ttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtg 117  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  42998604 ttttcaaattcatgtggtggaatatggagggaagtttttagggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtg 42998703  T
Q  118 tttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||||||||||||||||||||||||||||    
T  42998704 tttgcagacctaataacattaaggagtaagggata 42998738  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 42999197 - 42999331
Alignment:
Q  18 ttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtg 117  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||    
T  42999197 ttttcaaattcatgtggtggaatatggagggaagtttttagggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtg 42999296  T
Q  118 tttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||||||||||||||||||||||||||||    
T  42999297 tttgcagacctaataacattaaggagtaagggata 42999331  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 50232993 - 50233090
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    ||||||||||||||||||||||||||| ||  |  || |    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggata 50233090  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 43605582 - 43605691
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    ||||||||| ||||||||| || |||| | | |||||||||||  |||||| ||   |||||||||| ||||| |||||||| |||||||||||||||||    
T  43605582 tagagggaaatttttagggcta-cacttagagcaattaatgcagcagatttgaagccaaatttttagggttaattgtttgcaaacctaataacattaagg 43605680  T
Q  142 agtaagggata 152  Q
    || ||| ||||    
T  43605681 aggaagagata 43605691  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 29632579 - 29632694
Alignment:
Q  37 gaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacat 136  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||| ||||||||||||    
T  29632579 gaatttagaggaaattttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacat 29632678  T
Q  137 taaggagtaagggata 152  Q
    ||||||||||||||||    
T  29632679 taaggagtaagggata 29632694  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 21654680 - 21654547
Alignment:
Q  18 ttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtg 117  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| | |||||  | ||| ||| ||||    
T  21654680 ttttcaaattcatgtggtggaatatggagggaagtttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtg 21654581  T
Q  118 tttgcagacctaataacattaaggagtaagggat 151  Q
    |||||| |||||||||||||||||||||||||||    
T  21654580 tttgcacacctaataacattaaggagtaagggat 21654547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 21011979 - 21012109
Alignment:
Q  17 attttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagt 116  Q
    ||||| |||||||| ||||||||||| ||  |||||    ||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||    
T  21011979 attttgaaattcatttggtggaatattgaaagaatt----agggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagt 21012074  T
Q  117 gtttgcagacctaataacattaaggagtaagggat 151  Q
    | ||||  |||||||||||||||||||||||||||    
T  21012075 gattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 10641659 - 10641700
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgc 83  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  10641659 tagagggaattttctagggttatcactaacaacatttaatgc 10641700  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 5242660 - 5242766
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    ||||||||||||||||||| || || |||||||||||||||||  ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||    
T  5242660 tagagggaattttttagggcta-caataacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagg 5242758  T
Q  142 agtaaggg 149  Q
    ||||||||    
T  5242759 agtaaggg 5242766  T

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Target: scaffold0421 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 4670 - 4569
Alignment:
Q  50 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 149  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4670 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataaggg 4571  T
Q  150 at 151  Q
    ||    
T  4570 at 4569  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 39180073 - 39179965
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  39180073 tagagggaattttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaagg 39179974  T
Q  142 agtaaggga 150  Q
    |||||||||    
T  39179973 agtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 48538689 - 48538558
Alignment:
Q  18 ttttcaaattcatctggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtg 117  Q
    |||| |||||||| ||||||||||| ||  ||||||||||||||||||||||||  ||||||||| |  || |||| | |||||||||||| ||||||||    
T  48538689 ttttgaaattcatttggtggaatattgaaagaattttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaagtg 48538590  T
Q  118 tttgcagacctaataacattaaggagtaaggg 149  Q
     ||||  |||||||||||||||||||||||||    
T  48538589 attgctaacctaataacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 24535404 - 24535501
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||| | |||||||| ||||  ||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggata 24535501  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 18478739 - 18478629
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||| | ||||||| |||| ||| |||  ||||| |||||||||||||||||    
T  18478739 tagagggaattttctagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaagg 18478640  T
Q  142 agtaagggata 152  Q
    |||||||||||    
T  18478639 agtaagggata 18478629  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 18418404 - 18418494
Alignment:
Q  62 taacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 18418494  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 23485532 - 23485479
Alignment:
Q  98 gaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 23485479  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 7015574 - 7015463
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| ||  ||||||| | ||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  7015574 tagaggaaattttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaagg 7015475  T
Q  142 agtaagggatac 153  Q
    ||||||||||||    
T  7015474 agtaagggatac 7015463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 5169780 - 5169674
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    |||||| |||||| |||||||| |||| |||||  ||||||||  ||||||| | ||||||| |||| ||| |||| ||||| ||||||||| |||||||    
T  5169780 tagaggaaattttctagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaagg 5169681  T
Q  142 agtaagg 148  Q
    |||||||    
T  5169680 agtaagg 5169674  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 907778 - 907806
Alignment:
Q  122 cagacctaataacattaaggagtaaggga 150  Q
    |||||||||||||||||||||||||||||    
T  907778 cagacctaataacattaaggagtaaggga 907806  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 8609491 - 8609539
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 147  Q
    |||||| ||| ||||| ||| |||||||||||||| |||||||||||||    
T  8609491 aaatttctagggttaattgtatgcagacctaataagattaaggagtaag 8609539  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 151  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 151  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  55 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 151  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 50833812 - 50833759
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50833759  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 50833877 - 50833824
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833877 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50833824  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 50841976 - 50842029
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50841976 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50842029  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 50842041 - 50842094
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 152  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50842094  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 16981083 - 16980972
Alignment:
Q  34 gtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataa 133  Q
    |||||||| |||| |||||||| ||||||||||||||||  | ||||||||| ||||||| |   || ||||||| ||||||   ||||| |||||||||    
T  16981083 gtggaatagagagagaattttt-agggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataa 16980985  T
Q  134 cattaaggagtaa 146  Q
    |||||||||||||    
T  16980984 cattaaggagtaa 16980972  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 40166578 - 40166686
Alignment:
Q  42 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 141  Q
    ||||||||| ||||||||| || || | |||||||||||||||  ||||||  |   |||||| ||| ||| | | ||||||||| ||||||||||||||    
T  40166578 tagagggaaatttttagggcta-caattacaacaattaatgcagcagatttggagccaaatttctagggttgattatttgcagacttaataacattaagg 40166676  T
Q  142 agtaagggat 151  Q
    ||||||||||    
T  40166677 agtaagggat 40166686  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 50717259 - 50717211
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 148  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50717259 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50717211  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 50795589 - 50795637
Alignment:
Q  99 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 148  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50795589 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50795637  T

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Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 11433 - 11383
Alignment:
Q  97 ggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 147  Q
    |||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11433 ggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

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