View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_19 (Length: 273)
Name: NF5232_low_19
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 519929 - 520153
Alignment:
| Q |
14 |
catcaaaaagttgtttgtaacaagaaccttggagaatgaaaaactctccatgtgcatggatggtaccatgtgtgtgtcacagacagcaccaatgcattgc |
113 |
Q |
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| T |
519929 |
catctaaaagttgtttgtaacaacaaccttggagaatgaaaaactctccatgtgcatgg----taccatgtgtgtgtcacagacagcaccaatgcattgc |
520024 |
T |
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| Q |
114 |
acgtaactttgacaataactataaacaaaagagtttcattaattaataaatatatgatcaaatcaaaagtgagtaggatctatacttgcatattcaatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
520025 |
acgtaactttgacaataactataaacaaaagagtttcattaatt----aatatatgatcaaatcaaaagtgagtaggatctatacttgcatattcaatat |
520120 |
T |
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| Q |
214 |
tttaattaatgtcctctctccacacacatgcac |
246 |
Q |
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|||||||||||||||||||||||| | |||||| |
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| T |
520121 |
tttaattaatgtcctctctccacatatatgcac |
520153 |
T |
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