View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232_low_2 (Length: 476)

Name: NF5232_low_2
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232_low_2
NF5232_low_2
[»] chr4 (25 HSPs)
chr4 (200-358)||(53935058-53935215)
chr4 (13-120)||(53934869-53934978)
chr4 (21-85)||(21069285-21069349)
chr4 (13-96)||(8484894-8484977)
chr4 (412-462)||(53935273-53935323)
chr4 (21-100)||(4688909-4688989)
chr4 (13-96)||(6102108-6102192)
chr4 (20-95)||(7784321-7784397)
chr4 (28-100)||(35233070-35233142)
chr4 (17-116)||(3666825-3666927)
chr4 (30-96)||(1564844-1564910)
chr4 (232-357)||(23449498-23449623)
chr4 (20-95)||(48653629-48653706)
chr4 (20-95)||(7764209-7764285)
chr4 (29-96)||(27743437-27743504)
chr4 (38-100)||(5122155-5122217)
chr4 (208-302)||(41260530-41260624)
chr4 (38-100)||(45226619-45226681)
chr4 (21-97)||(15724121-15724198)
chr4 (44-96)||(28148017-28148069)
chr4 (243-346)||(48653428-48653531)
chr4 (226-276)||(25686074-25686124)
chr4 (29-74)||(4642683-4642728)
chr4 (38-83)||(35014520-35014565)
chr4 (21-93)||(45983613-45983686)
[»] chr3 (18 HSPs)
chr3 (20-120)||(21562782-21562883)
chr3 (21-100)||(42362991-42363071)
chr3 (13-100)||(27054300-27054387)
chr3 (20-100)||(44651191-44651271)
chr3 (21-100)||(4280516-4280596)
chr3 (44-117)||(22472819-22472894)
chr3 (46-100)||(5640501-5640555)
chr3 (17-95)||(25919032-25919110)
chr3 (46-100)||(50578772-50578826)
chr3 (21-85)||(55467431-55467495)
chr3 (26-100)||(20846708-20846783)
chr3 (21-85)||(37045540-37045605)
chr3 (51-114)||(37656731-37656795)
chr3 (260-359)||(10481125-10481224)
chr3 (22-100)||(52632255-52632334)
chr3 (227-301)||(5640294-5640368)
chr3 (21-97)||(17144510-17144587)
chr3 (230-303)||(4555062-4555135)
[»] chr1 (26 HSPs)
chr1 (17-117)||(25507103-25507205)
chr1 (26-100)||(10847301-10847376)
chr1 (26-117)||(17651979-17652073)
chr1 (21-94)||(18310170-18310244)
chr1 (39-100)||(41751392-41751453)
chr1 (208-301)||(44056154-44056247)
chr1 (27-94)||(8268880-8268948)
chr1 (208-271)||(9330819-9330882)
chr1 (17-61)||(16063079-16063123)
chr1 (17-85)||(25559809-25559877)
chr1 (21-85)||(26344838-26344902)
chr1 (21-100)||(32910144-32910224)
chr1 (229-301)||(39157878-39157950)
chr1 (21-117)||(17989273-17989372)
chr1 (38-85)||(50951827-50951874)
chr1 (21-98)||(382282-382360)
chr1 (46-100)||(11073144-11073198)
chr1 (21-117)||(11537024-11537126)
chr1 (22-83)||(23474895-23474957)
chr1 (26-117)||(35992352-35992446)
chr1 (38-117)||(44055980-44056061)
chr1 (38-100)||(52829055-52829117)
chr1 (38-117)||(9961940-9962021)
chr1 (13-74)||(27350860-27350921)
chr1 (21-100)||(8165317-8165396)
chr1 (29-85)||(52380524-52380580)
[»] chr8 (16 HSPs)
chr8 (17-96)||(13325525-13325604)
chr8 (35-99)||(41346154-41346218)
chr8 (20-100)||(40436665-40436746)
chr8 (17-85)||(1271367-1271435)
chr8 (17-96)||(11219180-11219259)
chr8 (21-96)||(22810970-22811044)
chr8 (38-100)||(9012609-9012671)
chr8 (7-85)||(12193252-12193330)
chr8 (7-85)||(12437680-12437758)
chr8 (38-100)||(28441716-28441778)
chr8 (13-85)||(4785461-4785533)
chr8 (29-100)||(38926207-38926279)
chr8 (29-96)||(24681867-24681934)
chr8 (49-96)||(31477928-31477975)
chr8 (26-61)||(14185685-14185721)
chr8 (34-70)||(30253553-30253589)
[»] chr7 (24 HSPs)
chr7 (20-97)||(22701114-22701191)
chr7 (21-100)||(30855324-30855404)
chr7 (21-96)||(10338586-10338661)
chr7 (29-96)||(11834243-11834310)
chr7 (26-100)||(2734571-2734645)
chr7 (22-96)||(23729602-23729676)
chr7 (26-94)||(26524716-26524785)
chr7 (21-100)||(48643016-48643096)
chr7 (21-100)||(49012278-49012358)
chr7 (26-100)||(32237900-32237975)
chr7 (51-97)||(8118057-8118103)
chr7 (38-100)||(23675624-23675686)
chr7 (21-100)||(22298761-22298840)
chr7 (20-100)||(33434339-33434420)
chr7 (27-94)||(21237553-21237621)
chr7 (26-97)||(46147444-46147516)
chr7 (246-357)||(40849317-40849428)
chr7 (227-301)||(6879666-6879740)
chr7 (243-356)||(7697752-7697865)
chr7 (243-296)||(36550920-36550973)
chr7 (227-276)||(38903265-38903314)
chr7 (21-89)||(7697517-7697585)
chr7 (29-85)||(20334820-20334876)
chr7 (38-117)||(23032928-23033008)
[»] chr5 (26 HSPs)
chr5 (38-100)||(34881094-34881156)
chr5 (21-120)||(7487068-7487170)
chr5 (17-96)||(33792874-33792953)
chr5 (22-96)||(25495320-25495394)
chr5 (31-117)||(40331237-40331326)
chr5 (21-85)||(10090459-10090523)
chr5 (26-98)||(34111545-34111620)
chr5 (26-100)||(2589211-2589287)
chr5 (286-358)||(22747109-22747181)
chr5 (26-100)||(12378856-12378931)
chr5 (26-100)||(14652692-14652767)
chr5 (49-96)||(40692714-40692761)
chr5 (227-357)||(691123-691253)
chr5 (26-94)||(18845751-18845820)
chr5 (8-85)||(34087626-34087703)
chr5 (56-100)||(40109393-40109438)
chr5 (21-100)||(11402826-11402906)
chr5 (233-357)||(18432535-18432659)
chr5 (208-276)||(34880914-34880982)
chr5 (22-96)||(28224639-28224713)
chr5 (21-120)||(36567944-36568046)
chr5 (16-96)||(4414445-4414526)
chr5 (227-276)||(6595372-6595421)
chr5 (225-346)||(40331009-40331129)
chr5 (29-74)||(41455110-41455155)
chr5 (225-273)||(4414658-4414706)
[»] chr6 (12 HSPs)
chr6 (21-96)||(6400051-6400126)
chr6 (46-100)||(13532049-13532103)
chr6 (17-94)||(31945218-31945295)
chr6 (26-100)||(20500794-20500869)
chr6 (21-84)||(22414032-22414095)
chr6 (29-85)||(7169872-7169928)
chr6 (26-100)||(17306595-17306670)
chr6 (40-94)||(4563109-4563163)
chr6 (38-100)||(8064737-8064799)
chr6 (51-85)||(13092255-13092289)
chr6 (227-276)||(13531866-13531915)
chr6 (38-98)||(14940349-14940409)
[»] chr2 (11 HSPs)
chr2 (25-100)||(11377434-11377510)
chr2 (38-116)||(30514697-30514777)
chr2 (51-117)||(15320345-15320414)
chr2 (33-100)||(21734276-21734343)
chr2 (39-117)||(1331241-1331321)
chr2 (51-100)||(10242514-10242563)
chr2 (21-85)||(11678226-11678290)
chr2 (21-85)||(11695704-11695768)
chr2 (17-85)||(5862458-5862526)
chr2 (38-94)||(17762994-17763050)
chr2 (48-100)||(44085744-44085796)
[»] scaffold0001 (1 HSPs)
scaffold0001 (208-294)||(428066-428152)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 53935058 - 53935215
Alignment:
Q  200 gatttttcgagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccaca 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53935058 gatttttcgagtattggttcacgtgacatatgtttaattcatatttt-cttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccaca 53935156  T
Q  300 aatccactcaaaccatgcagatgaatataaaaatgatccaaatacattcaaatcaaata 358  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53935157 aatccactcaaaccatgcggatgaatataaaaatgatccaaatacattcaaatcaaata 53935215  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 53934869 - 53934978
Alignment:
Q  13 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc--ttaaaagtt 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||   ||||||||    
T  53934869 aatattctcaactacatagaccaaataaaaatgtggataaaaagtaatcatattttataagataggcaaaagattaagattttatcatcatctaaaagtt 53934968  T
Q  111 caagtagtac 120  Q
    ||||||||||    
T  53934969 caagtagtac 53934978  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 21069285 - 21069349
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  21069285 caactacgtagaccaaattaaaatgtggacaaaaagtaatcatattatgtaagaaatgcaaaaga 21069349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 8484894 - 8484977
Alignment:
Q  13 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||||||| ||| |||||||||| ||||  ||||||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  8484894 aatattctcaaatacgtagaccaaattaaaacatggacaaaaagtaatcatattttataagaaatgcaaaagactaaaatttta 8484977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 462
Target Start/End: Original strand, 53935273 - 53935323
Alignment:
Q  412 aattgattctgatctcaaaacacttgcatgcatttgtatagagtagtatat 462  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53935273 aattgattctgatctcaaaacacttgcatgcagttgtatagagtagtatat 53935323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 4688909 - 4688989
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||| ||||||| |||||||| ||||||||||||||||||| | ||||| |||||||||||||| ||||||||||    
T  4688909 caacaacatataccaaattaaaaatgtagacaaaaagtaatcatattctataagaaatgcaaaagattaaaattttatcat 4688989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 6102108 - 6102192
Alignment:
Q  13 aatattctcaactacatagaccaaataaaa-atgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||| |||| |||||||| |||||||| |||||||||| |||||||| ||||||||| || |||||||| | ||||||||||    
T  6102108 aatattcccaaccacatagactaaataaaaaatgtggacaataagtaatcctattttgtatgaaatgcaaaaaactaagatttta 6102192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7784397 - 7784321
Alignment:
Q  20 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 95  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||| |||||||||    
T  7784397 tcaacaacatagaccaaattaaaaacatggacaaaaagtaatcatattttgtaagaaatgtaatagactaagatttt 7784321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 35233142 - 35233070
Alignment:
Q  28 atagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||| |||| |||||||||| |||||  |||| ||||||| ||| |||||||||||||||||||||    
T  35233142 atagaccaaattaaaacgtggacaaaaggtaattttattatgtaagaaatgtaaaagattaagattttatcat 35233070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 3666927 - 3666825
Alignment:
Q  17 ttctcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat--cttaaaagttcaa 113  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||||| | | |||  ||||||| | ||||||||||||||   ||||||||||||    
T  3666927 ttcttaacaacatagaccaaattaaaaaggtggacaaaaagtaatcatattctatgagaagtgcaaaacactaagattttatcattctttaaaagttcaa 3666828  T
Q  114 gta 116  Q
    |||    
T  3666827 gta 3666825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 1564910 - 1564844
Alignment:
Q  30 agaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||| || ||||||| ||| ||||||    
T  1564910 agaccaaattaaaatgtggacaaaaaataatcctattttgtaagaaatacaaaagagtaaaatttta 1564844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 357
Target Start/End: Complemental strand, 23449623 - 23449498
Alignment:
Q  232 tttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaa 331  Q
    ||||||| || |||||||||| |||| ||||||||||||||||||   ||| |||||| |||||  ||||   |  |||||||||| | ||| || ||||    
T  23449623 tttaattaatgtttttcttatattgcgatttgatttggtttggttcggttggtaaaatcaaaactgcaaactgaaccaaaccatgcggttgagtaaaaaa 23449524  T
Q  332 atgatccaaatacattcaaatcaaat 357  Q
    ||||||| ||||||| ||||||||||    
T  23449523 atgatccgaatacatccaaatcaaat 23449498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 48653706 - 48653629
Alignment:
Q  20 tcaactacatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagatttt 95  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| |||||||| ||| || ||||||| |||||||||    
T  48653706 tcaactacatagaccaaattaaaaacgtggacaaaaaagtaatcttattttgttagaaatacaaaagactaagatttt 48653629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7764285 - 7764209
Alignment:
Q  20 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 95  Q
    ||||| || |||||||||| ||||| |||| ||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  7764285 tcaacaacttagaccaaattaaaaacgtggtcaaaaagtaatcatattttataagaaatgtaaaagactaagatttt 7764209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 27743437 - 27743504
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||| ||||| ||| | ||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  27743437 tagactaaatataaacgcggacaaaaagtaatcctattttgtaagaaatacaaaagattaaaatttta 27743504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 5122217 - 5122155
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| ||||||||||||||||  |||||||||| | |||||||||| |||| |||||||||    
T  5122217 taaaaacgtggacaaaaagtaattctattttgtaaaagatgcaaaagactaaggttttatcat 5122155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 41260530 - 41260624
Alignment:
Q  208 gagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaat 302  Q
    ||||||||||| |  | ||||| ||||||||  | |||||||||||||||| |||| ||||||||| ||   ||| |||||||||||||||||||    
T  41260530 gagtattggtttagatgacataagtttaattagtgtttttcttatgttgcagtttggtttggtttgattcggttggtaaaataaaaaccacaaat 41260624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 45226619 - 45226681
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| ||| ||||||||||||  |||||||||||| |||||||||  ||||||||||||||    
T  45226619 taaaaacgtgaacaaaaagtaattttattttgtaagaaatgcaaaaggataagattttatcat 45226681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 15724121 - 15724198
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 97  Q
    |||| ||||||||||| | |||||  ||||||||| |||||| |||||| ||||| |||||||||| |||||||||||    
T  15724121 caacaacatagaccaagttaaaaacatggacaaaatgtaatcctattttttaagaaatgcaaaagactaagattttat 15724198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 28148017 - 28148069
Alignment:
Q  44 tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||| |||||||||||||||||||||||| || ||||||| ||| ||||||    
T  28148017 tgtggataaaaagtaatcatattttgtaagaaattcaaaagactaaaatttta 28148069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 48653531 - 48653428
Alignment:
Q  243 tttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaatgatccaaat 342  Q
    |||||||||| ||||  |||| ||||||||||||  ||||  ||||| |||| |||||| | |  |||||||||||| ||| || ||||||||| |||||    
T  48653531 tttttcttatattgcggtttggtttggtttggttcgattgacaaaatcaaaatcacaaaccgaaccaaaccatgcagttgagtaaaaaaatgattcaaat 48653432  T
Q  343 acat 346  Q
    ||||    
T  48653431 acat 48653428  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 25686124 - 25686074
Alignment:
Q  226 catatgtttaattcatatttttcttatgttgcaatttgatttggtttggtt 276  Q
    |||||||||||||  | ||||||||||||||||| ||| ||||||||||||    
T  25686124 catatgtttaattagtgtttttcttatgttgcaacttggtttggtttggtt 25686074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 4642683 - 4642728
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 74  Q
    |||||||||| |||| ||||||||||||||||| |||||| |||||    
T  4642683 tagaccaaattaaaacgtggacaaaaagtaatcctattttataaga 4642728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 35014520 - 35014565
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaa 83  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||||||    
T  35014520 taaaaacgtggacaaaaaataatcttattttgtaagaaatgcaaaa 35014565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 45983613 - 45983686
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatt 93  Q
    |||| ||||||||||| | |||||  |||||||||  ||||| |||||| ||||| ||||||||||||||||||    
T  45983613 caacaacatagaccaagttaaaaacatggacaaaacataatcctattttctaagaaatgcaaaagattaagatt 45983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 21562782 - 21562883
Alignment:
Q  20 tcaactacatagaccaaataaaa-atgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatcttaaaagttcaagtagt 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| || ||||||||||||||  |  |||||||||||||    
T  21562782 tcaactacatagaccaaataaaaaatgtggacaaaaagtaatcatattttattagaaatgcaaatgaataagattttatcattctttaagttcaagtagt 21562881  T
Q  119 ac 120  Q
    ||    
T  21562882 ac 21562883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 42363071 - 42362991
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  42363071 caacgacatagaccaagttaaaaacgtggacaaaaagtaatcatattttgtaagaaatgcaaaatactaagattttatcat 42362991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 27054300 - 27054387
Alignment:
Q  13 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| || ||||||| ||| |||| |||||    
T  27054300 aatattcccaactatataaaccaaattaaaatatggacaaaaagtaatcatattttgtaagaaatacaaaagagtaaaatttaatcat 27054387  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 44651191 - 44651271
Alignment:
Q  20 tcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||| ||||| ||||| ||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||||||| ||||    
T  44651191 tcaacaacatataccaagtaaaaatatggacaaaacgtaatcttattttgtaagaaatgcaaaagactaagattttttcat 44651271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 4280516 - 4280596
Alignment:
Q  21 caactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||||| | |||||| ||| ||||||||||||||    
T  4280516 caactacatagaccaaatttaaaacatggacaaaaaataatcatattttgtaataaatgcaacagactaagattttatcat 4280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 22472894 - 22472819
Alignment:
Q  44 tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 117  Q
    ||||| ||||||||||||||||| ||||||| |||||||| | |||||||||||||| |  |||||||||||||||    
T  22472894 tgtgggcaaaaagtaatcatattatgtaagaaatgcaaaatactaagattttatcattttctaaaagttcaagtag 22472819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 5640555 - 5640501
Alignment:
Q  46 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||    
T  5640555 tggacaaaatgtaatcctattttgtaagaaatgcaaaagactaagattttatcat 5640501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 25919110 - 25919032
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 95  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||| | ||||||| | || ||||||| ||| |||||    
T  25919110 ttctcaactacgcagaccaaattaaaatgtggacaaaaagtaatcaaactttgtaataaatacaaaagactaaaatttt 25919032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 50578826 - 50578772
Alignment:
Q  46 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||    
T  50578826 tggacaaaacgtaatcctattttgtaagaaatgcaaaagactaagattttatcat 50578772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 55467495 - 55467431
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| ||||||||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  55467495 caactacgtagaccaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 55467431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 20846708 - 20846783
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||| ||||||| ||||| ||||||| |||||||| ||||| ||||||| ||  |||||||||||||||||||||    
T  20846708 acataaaccaaattaaaaacgtggacacaaagtaattatattatgtaagaaatataaaagattaagattttatcat 20846783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 37045540 - 37045605
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    |||| ||||| ||||||| ||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  37045540 caacaacataaaccaaattaaaaacgcggacaaaaagtaatcttattttgtaagaaatgcaaaaga 37045605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 37656795 - 37656731
Alignment:
Q  51 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct-taaaagttcaag 114  Q
    |||||||||||||||| | ||||| ||||||||| || |||||||| ||||| ||||||||||||    
T  37656795 aaaaagtaatcatattatttaagaaatgcaaaaggttgagattttaacatctctaaaagttcaag 37656731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 10481224 - 10481125
Alignment:
Q  260 tttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaatgatccaaatacattcaaatcaaatat 359  Q
    |||| ||||||||||||   ||| ||||||||||||| |||||| | ||||||||| | | ||| ||  ||| |||||||||||||| |||| |||||||    
T  10481224 tttggtttggtttggttcggttgataaaataaaaaccgcaaatcaaatcaaaccatacggttgagtaataaagtgatccaaatacatccaaaccaaatat 10481125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 52632255 - 52632334
Alignment:
Q  22 aactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| ||||||| ||||| ||||||||||| |||| || || ||||||| ||| |||| | ||||||||||||||    
T  52632255 aactacataaaccaaattaaaaacgtggacaaaaattaataatgttatgtaagaaatgtaaaatactaagattttatcat 52632334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 5640368 - 5640294
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaa 301  Q
    |||||||||||| | ||||||||||||||||| |||| |||||| |||||   ||| |||||| |||| ||||||    
T  5640368 atatgtttaattaacatttttcttatgttgcagtttggtttggtatggtttggttggtaaaatgaaaatcacaaa 5640294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 17144587 - 17144510
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagattttat 97  Q
    |||||||||||| ||||| ||||| ||||||||||| | |||| |||||| ||||| |||||||||| |||||||||||    
T  17144587 caactacatagagcaaatgaaaaacgtggacaaaaatgaaatc-tattttataagaaatgcaaaagactaagattttat 17144510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 4555062 - 4555135
Alignment:
Q  230 tgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatc 303  Q
    ||||||||| | ||||||||||||||||  ||||||| |||||||||  | || |||||| |||||| ||||||    
T  4555062 tgtttaattaacatttttcttatgttgcggtttgattcggtttggttcgactggtaaaatgaaaaccgcaaatc 4555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 25507103 - 25507205
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc--ttaaaagttcaag 114  Q
    |||| ||| ||||| || |||| |||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||   ||||||||||||    
T  25507103 ttctaaacaacataaactaaatgaaaaagtggataaaaagtaatcatattttgtaagaaatgcaaaagattaatattttatcatcgtctaaaagttcaag 25507202  T
Q  115 tag 117  Q
    |||    
T  25507203 tag 25507205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 10847376 - 10847301
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||| ||||||||||||||||||||||  ||||  |||||| ||| |||||| ||||||||||||||    
T  10847376 acatagaccaaattaaaaatgtggacaaaaagtaattctattacgtaagaaatgtaaaagactaagattttatcat 10847301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 17651979 - 17652073
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 117  Q
    ||||| ||||||| |||||||||||||||||||||| ||| | ||||||| ||| |||||| ||||||||||| | ||| |||||||||||||||    
T  17651979 acataaaccaaattaaaaatgtggacaaaaagtaattatactatgtaagaaatgtaaaagactaagattttattattctctaaaagttcaagtag 17652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 18310170 - 18310244
Alignment:
Q  21 caactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    ||||||||||||||||||  |||| ||| |||||||||||||||||||||||||| ||  |||||| ||||||||    
T  18310170 caactacatagaccaaatttaaaacgtgaacaaaaagtaatcatattttgtaagaaatataaaagactaagattt 18310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 41751392 - 41751453
Alignment:
Q  39 aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| |||||||||||||||  ||||| |||||| |||||||||||||||| ||||||||    
T  41751392 aaaaatatggacaaaaagtaattttatttagtaagaaatgcaaaagattaagactttatcat 41751453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 44056154 - 44056247
Alignment:
Q  208 gagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaa 301  Q
    ||||||||||  | || |||||||||||||  ||||||||||||||||||| |||| ||||||||||||   ||| |||||| |||||| ||||    
T  44056154 gagtattggtctaagtgacatatgtttaatcaatatttttcttatgttgcagtttggtttggtttggttcagttggtaaaatgaaaaccgcaaa 44056247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 8268880 - 8268948
Alignment:
Q  27 catagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    |||||||||||| ||||||||||||||||||||||   ||||| ||||| |||||||||| ||||||||    
T  8268880 catagaccaaattaaaaatgtggacaaaaagtaattccattttttaagaaatgcaaaagactaagattt 8268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 9330819 - 9330882
Alignment:
Q  208 gagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtt 271  Q
    ||||||||||  | || |||||||||||||| || ||||||||||||||| |||||||||||||    
T  9330819 gagtattggtctaggtgacatatgtttaattaatgtttttcttatgttgcgatttgatttggtt 9330882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 16063079 - 16063123
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatc 61  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||    
T  16063079 ttctcaactacgtagaccaaattaaaacgtggacaaaaagtaatc 16063123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 25559877 - 25559809
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||||| | |||||||||| |||| |||||||||||||||||  | ||||||||| || |||||||    
T  25559877 ttctcaacttcgtagaccaaattaaaacgtggacaaaaagtaatccaactttgtaagaaatacaaaaga 25559809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 26344902 - 26344838
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| || |||||||  ||| ||||||||||||||||| |||||||||||| || |||||||    
T  26344902 caactacgtataccaaatttaaacgtggacaaaaagtaatcctattttgtaagaaatacaaaaga 26344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 32910224 - 32910144
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||| | |||||  |||||||||  ||||| |||||||||||| |||||||||| ||||||||| ||||    
T  32910224 caacaacatagaccaagttaaaaacatggacaaaacataatcctattttgtaagaaatgcaaaagactaagattttctcat 32910144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 39157950 - 39157878
Alignment:
Q  229 atgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaa 301  Q
    ||||||||||  | ||| |||||||||||  |||||||||||||||||   ||| ||||||||||||||||||    
T  39157950 atgtttaattagtgtttatcttatgttgcggtttgatttggtttggttcggttgataaaataaaaaccacaaa 39157878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 17989273 - 17989372
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 117  Q
    |||| ||||| ||||||| ||||| ||||||| ||||||||  |||| ||||||| ||  ||||||||||||| |||||| ||| |||||||||||||||    
T  17989273 caacaacataaaccaaattaaaaacgtggacacaaagtaattctattatgtaagaaatataaaagattaagatgttatcattctataaaagttcaagtag 17989372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 50951874 - 50951827
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    |||||||||||||||||||||||| |||| ||||||| ||| ||||||    
T  50951874 taaaaatgtggacaaaaagtaatcttattatgtaagaaatgtaaaaga 50951827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 382282 - 382360
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 98  Q
    |||| ||||||||| ||| ||||||| |||||||||||||||||||  ||||||| ||| ||| || ||| ||||||||    
T  382282 caacaacatagaccgaattaaaaatgcggacaaaaagtaatcatatactgtaagaaatgtaaatgactaaaattttatc 382360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 11073198 - 11073144
Alignment:
Q  46 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| | |||| |||||||||||| |||||||||| |||||| |||||||    
T  11073198 tggacaaaacgaaatcctattttgtaagaaatgcaaaagactaagatgttatcat 11073144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 11537024 - 11537126
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc-----ttaaaagttcaag 114  Q
    |||||||  ||||||||| ||||||||  |||||| |||||| ||||| |||||| ||||||||  |||||||||||| |||     |||||||||||||    
T  11537024 caactacgcagaccaaattaaaaatgttaacaaaatgtaatcctatttcgtaagaaatgcaaaaagttaagattttattatcattttttaaaagttcaag 11537123  T
Q  115 tag 117  Q
    |||    
T  11537124 tag 11537126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 23474957 - 23474895
Alignment:
Q  22 aactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaa 83  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||| ||| ||||    
T  23474957 aactatatagaccaaattaaaaacgtggacaaaaactaatcctattttgtaagaaatgaaaaa 23474895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 35992446 - 35992352
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 117  Q
    ||||| ||||||| ||||| |||||||||| |||||  |||| ||||||| ||| |||||| ||||||||||| | ||| |||||||||||||||    
T  35992446 acataaaccaaattaaaaacgtggacaaaacgtaattctattatgtaagaaatgtaaaagactaagattttattattctctaaaagttcaagtag 35992352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 44055980 - 44056061
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 117  Q
    |||||| ||||| ||||||||||| |||||| ||| | |||||||||| | | |||||||||| |  |||||||||||||||    
T  44055980 taaaaacgtggaaaaaaagtaatcttattttctaataaatgcaaaagacttaaattttatcattttctaaaagttcaagtag 44056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 52829055 - 52829117
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||| ||||| ||||||||| ||||| ||||||| ||| |||| | ||||||||||||||    
T  52829055 taaaaatatggacgaaaagtaattatattatgtaagaaatgtaaaatactaagattttatcat 52829117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 9962021 - 9961940
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 117  Q
    |||||| ||||||| ||||||||  |||| ||||||| ||  |||| ||||||||||||||| ||| |||||||||||||||    
T  9962021 taaaaacgtggacacaaagtaattttattatgtaagaaatataaaatattaagattttatcattctctaaaagttcaagtag 9961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 27350860 - 27350921
Alignment:
Q  13 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 74  Q
    |||||| |||||||| |||| ||||| ||||  |||||||||||||| | ||||||||||||    
T  27350860 aatattttcaactacgtagagcaaattaaaacttggacaaaaagtaaccctattttgtaaga 27350921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 8165396 - 8165317
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||| | |||||  |||| |||||||| ||||||||| ||||| ||| |||||| ||||||||||||||    
T  8165396 caacaacatagaccaagttaaaaacctggaaaaaaagtattcatattttttaagaaatg-aaaagactaagattttatcat 8165317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 52380580 - 52380524
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    |||||||||| |||| | | |||||||||||||||| ||||||||| || |||||||    
T  52380580 tagaccaaattaaaacgcgcacaaaaagtaatcatagtttgtaagaaatacaaaaga 52380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 13325525 - 13325604
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||||||  |||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  13325525 ttctcaactaagtagaccaaattaaaacgtgaacaaaaagtaatcatattttgtaagaaatgcaaaagactaaaatttta 13325604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 41346154 - 41346218
Alignment:
Q  35 aaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca 99  Q
    |||||| |||||||||||||||||||| ||||||| |||| || ||||||||| |||||||||||    
T  41346154 aaataataatgtggacaaaaagtaatcttattttgaaagaaatacaaaagattgagattttatca 41346218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 40436665 - 40436746
Alignment:
Q  20 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||| ||||||||||| | |||||  ||||||||| ||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  40436665 tcaacaacatagaccaagttaaaaacatggacaaaatgtaatcatattttataagaaatgaaaaagactaagattttatcat 40436746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1271367 - 1271435
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||||| | ||||||||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  1271367 ttctcaactgcgtagaccaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 1271435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 11219180 - 11219259
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||||||  ||||||||| |||| || |||||||||||||| |||||||||||| || || |||| ||| ||||||    
T  11219180 ttctcaactacgcagaccaaattaaaacgtagacaaaaagtaatcctattttgtaagaaatacacaagactaaaatttta 11219259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 22811044 - 22810970
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||| |||||||||| |||| ||||||||||||| ||  |||||||||||| || ||||||||||| ||||||    
T  22811044 caactacgtagaccaaattaaaacgtggacaaaaagt-attttattttgtaagaaatacaaaagattaaaatttta 22810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 9012671 - 9012609
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| || |||||||||||||| |||||||||||| ||||||||   ||||||||||||||    
T  9012671 taaaaacgttgacaaaaagtaatcttattttgtaagaaatgcaaaaagctaagattttatcat 9012609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 12193330 - 12193252
Alignment:
Q  7 tcgaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||| ||| |||| ||| || |||||||||| |||| ||| | |||||||||||||||||||||||| || |||||||    
T  12193330 tcgaacaatgttctaaacaacgtagaccaaattaaaacgtgcataaaaagtaatcatattttgtaagaaatacaaaaga 12193252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 12437758 - 12437680
Alignment:
Q  7 tcgaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||| ||| |||| ||| || |||||||||| |||| ||| | |||||||||||||||||||||||| || |||||||    
T  12437758 tcgaacaatgttctaaacaacgtagaccaaattaaaacgtgcataaaaagtaatcatattttgtaagaaatacaaaaga 12437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 28441716 - 28441778
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| ||||| ||||||||||| |||||| ||||| |||||||||| ||| ||||||||||    
T  28441716 taaaaacgtggaaaaaaagtaatcgtattttttaagaaatgcaaaagactaaaattttatcat 28441778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 4785461 - 4785533
Alignment:
Q  13 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| ||||||| ||||| |||| |||| |||||||||||||||||  | ||||||||| || |||||||    
T  4785461 aatattcccaactacgtagactaaattaaaacgtggacaaaaagtaatccaactttgtaagaaatacaaaaga 4785533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 38926279 - 38926207
Alignment:
Q  29 tagaccaaataaaaatg-tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||||||||||||   |||||||||| ||||| |||| || |||| ||| |||||||||||||||||||||    
T  38926279 tagaccaaataaaaaacatggacaaaaaataatcttattgtgcaagaaatgtaaaagattaagattttatcat 38926207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 24681934 - 24681867
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||||| |||| |||||||||||||| || |||||||||||| ||  |||||| ||| ||||||    
T  24681934 tagaccaaattaaaacgtggacaaaaagtactcctattttgtaagaaatataaaagactaaaatttta 24681867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 31477975 - 31477928
Alignment:
Q  49 acaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||||||    
T  31477975 acaaaacgtaatcgtattttctaagaaatgcaaaagattaagatttta 31477928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 14185721 - 14185685
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatc 61  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14185721 acatagaccaaattaaaaatgtggacaaaaagtaatc 14185685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 30253589 - 30253553
Alignment:
Q  34 caaataaaaatgtggacaaaaagtaatcatattttgt 70  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  30253589 caaattaaaatgtggacaaaaagtaatcctattttgt 30253553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 22701191 - 22701114
Alignment:
Q  20 tcaactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 97  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  22701191 tcaactacatagaccaaataaaaaacgtgcacaaaaagtaatcatatttt-taagaaatgcaaaagaataagattttat 22701114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 30855324 - 30855404
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||||| |||||||  |||||||| |||||||||||||| ||| |||||||| ||||||||||||||||    
T  30855324 caacaacatagaccaaattaaaaatgcagacaaaaaataatcatattttgtgagaaatgcaaaacattaagattttatcat 30855404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 10338661 - 10338586
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||| ||||| |||| |||| |||||||||||||||||||||||||||||| || ||||||| ||| ||||||    
T  10338661 caactacttagacaaaattaaaacgtggacaaaaagtaatcatattttgtaagagatacaaaagactaaaatttta 10338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 11834310 - 11834243
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||    
T  11834310 tagaccaaattaaaatctggacaaaaagtaatcatattttgtaagaaatacaaaagactaaaatttta 11834243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 2734571 - 2734645
Alignment:
Q  26 acatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||    
T  2734571 acatagaccaaattaaaatatggataaaaagtaatcttattatgtaagaaatgtaaaagactaagattttatcat 2734645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 23729602 - 23729676
Alignment:
Q  22 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||| ||||||||  ||| ||| |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  23729602 aactacatggaccaaatttaaacgtgaacaaaaagtaatcatattttgtaagaaatacaaaagactaagatttta 23729676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 26524785 - 26524716
Alignment:
Q  26 acatagaccaaataaaaa-tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    ||||||||||||| |||| ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  26524785 acatagaccaaattaaaactgtggacaaaaagtaattatattatgtaagaaatgtaaaagattaagattt 26524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 48643016 - 48643096
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||| | |||||  ||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  48643016 caacaacatagaccaagttaaaaacatggacaaaacgtaatcatattttgtaagaaatacaaaagactaagattttatcat 48643096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 49012278 - 49012358
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||  |||||||||||| ||||||||||  |||||||||||||    
T  49012278 caactacatggactaaattaaaaacgtggacaaaaagtaattctattttgtaagaaatgcaaaagaacaagattttatcat 49012358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 32237900 - 32237975
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| ||||| |  |||||||||||||| |||||||||    
T  32237900 acatagaccaaattaaaaacgtggacaaaatgtaatcatattatgtaaaaattgcaaaagattaagcttttatcat 32237975  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 8118103 - 8118057
Alignment:
Q  51 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 97  Q
    |||||||||||||||||||||||| || |||||||||||||||||||    
T  8118103 aaaaagtaatcatattttgtaagaaatacaaaagattaagattttat 8118057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 23675624 - 23675686
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| ||||||||||||||||| |||| ||||| | ||| |||||||||||||||||||||    
T  23675624 taaaaacgtggacaaaaagtaatcctattatgtaataaatgtaaaagattaagattttatcat 23675686  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 22298761 - 22298840
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||||||||||||||| |||| ||| ||||||||||||| |||||  ||||| || ||||||| ||| |||| |||||    
T  22298761 caactacatagaccaaattaaaacgtgaacaaaaagtaatcctatttgataagaaatacaaaagactaaaatttaatcat 22298840  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 33434339 - 33434420
Alignment:
Q  20 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||||||||| |||||  || ||||||| ||||  |||||||||| | |||||||||| || |||||||||||    
T  33434339 tcaactacatagaccaaattaaaaacatgcacaaaaaataattctattttgtaacaaatgcaaaagagtatgattttatcat 33434420  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 21237621 - 21237553
Alignment:
Q  27 catagaccaaa-taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    ||||||||||| ||||| ||||||||||||||||| || || ||||||| ||| |||||| ||||||||    
T  21237621 catagaccaaaataaaattgtggacaaaaagtaattatgttatgtaagaaatgtaaaagactaagattt 21237553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 46147444 - 46147516
Alignment:
Q  26 acatagaccaaataaaaat-gtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 97  Q
    ||||| ||||||||||||  ||||||||||||||||  |||| ||||||| ||| |||||| |||||||||||    
T  46147444 acataaaccaaataaaaaacgtggacaaaaagtaattctattatgtaagaaatgtaaaagactaagattttat 46147516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 40849317 - 40849428
Alignment:
Q  246 ttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaatgatccaaataca 345  Q
    ||||||||||||  |||| ||||||||||||   ||| |||||| |||||| |||| | |  |||||||||| | ||| || |||| |||||| ||||||    
T  40849317 ttcttatgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaataca 40849416  T
Q  346 ttcaaatcaaat 357  Q
    | ||||||||||    
T  40849417 tccaaatcaaat 40849428  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 6879740 - 6879666
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaa 301  Q
    ||||||||||||  ||||||||||| |||| | |||| |||||||| |||  |||| ||||||||||| ||||||    
T  6879740 atatgtttaattagtatttttcttaagttgtagtttggtttggtttagttcgattggtaaaataaaaatcacaaa 6879666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 7697752 - 7697865
Alignment:
Q  243 tttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaatgatccaaat 342  Q
    |||||||||| |||   |||| ||||||||||||   ||| |||||| |||||| ||||||   ||||||||||||| ||| || ||||||||||| |||    
T  7697752 tttttcttatattgtggtttggtttggtttggttcggttggtaaaatcaaaaccgcaaatcagatcaaaccatgcagttgagtaaaaaaatgatccgaat 7697851  T
Q  343 acattcaaatcaaa 356  Q
    | || | |||||||    
T  7697852 aaatccgaatcaaa 7697865  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 36550920 - 36550973
Alignment:
Q  243 tttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaacc 296  Q
    ||||||||||||| |||||| ||||| |||||||  |||| |||||||||||||    
T  36550920 tttttcttatgttacaatttaatttgttttggtttgattgataaaataaaaacc 36550973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 38903265 - 38903314
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggtt 276  Q
    ||||||||||||  | |||||||||||||||  |||||||||||||||||    
T  38903265 atatgtttaattattgtttttcttatgttgcggtttgatttggtttggtt 38903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 7697517 - 7697585
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaa 89  Q
    ||||||| |||||||||| |||| ||||| |||||||||||  | ||||||||| ||  ||||||||||    
T  7697517 caactacgtagaccaaattaaaacgtggaaaaaaagtaatccaactttgtaagaaattaaaaagattaa 7697585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 20334820 - 20334876
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||| |||| |||| ||| ||||||||||||| |||||||||||| || |||||||    
T  20334820 tagactaaattaaaacgtgcacaaaaagtaatcctattttgtaagaaatacaaaaga 20334876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 23032928 - 23033008
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tcttaaaagttcaagtag 117  Q
    |||||||||| ||  ||||||||  |||| ||||||| ||  |||||||||||||||||||| |||  |||||||||||||    
T  23032928 taaaaatgtgaacgcaaagtaattctattatgtaagaaatataaaagattaagattttatcattctctaaagttcaagtag 23033008  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 34881156 - 34881094
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||    
T  34881156 taaaaatgtggacaaaaagtaatcgtattttgtaagaaatgcaaaaaactaagattttatcat 34881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7487170 - 7487068
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 117  Q
    |||| ||||||||||||| ||||| || |||||||| |||||||||| | ||||| ||| | ||||||||||||||||||| |  |||||||||||||||    
T  7487170 caacaacatagaccaaattaaaaacgtagacaaaaattaatcatattctctaagaaatgtataagattaagattttatcattttctaaaagttcaagtag 7487071  T
Q  118 tac 120  Q
    |||    
T  7487070 tac 7487068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 33792874 - 33792953
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||||||| ||||| |||| |||| |||||||||||| ||||||||||||||||| ||  |||||||||| ||||||    
T  33792874 ttctcaactacgtagactaaattaaaacgtggacaaaaagcaatcatattttgtaagaaataaaaaagattaaaatttta 33792953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 25495320 - 25495394
Alignment:
Q  22 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||| |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||| ||| ||||||    
T  25495320 aactacgtagaccaaattaaaacgtggacaaaaagtaatcttattttgtaagaaatacaaaagactaaaatttta 25495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 40331326 - 40331237
Alignment:
Q  31 gaccaaataaaaa-tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 117  Q
    ||||||||||||| |||||| ||||| ||||| |||||| ||||| |||||||||| ||||||||||||| ||| |||||||||||||||    
T  40331326 gaccaaataaaaaatgtggataaaaaataatcttattttttaagaaatgcaaaagactaagattttatcattctctaaaagttcaagtag 40331237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 10090459 - 10090523
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| || |||||||    
T  10090459 caactacgtagaccaaattaaaatttggacaaaaagtaatcctattttgtaagaaatacaaaaga 10090523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 34111620 - 34111545
Alignment:
Q  26 acatagaccaaat---aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 98  Q
    |||||||||||||   ||||| |||||||||||||||||||||| ||||||| ||| ||||||  |||||||||||    
T  34111620 acatagaccaaattaaaaaaacgtggacaaaaagtaatcatattatgtaagaaatgtaaaagacaaagattttatc 34111545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 2589211 - 2589287
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||| ||||||| ||||||||||||||||| |||||  |||| ||||||| ||| |||||||||||||||||||||    
T  2589211 acatataccaaattaaaaatgtggacaaaaaagtaattctattatgtaagaaatgtaaaagattaagattttatcat 2589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 22747181 - 22747109
Alignment:
Q  286 aaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaatgatccaaatacattcaaatcaaata 358  Q
    ||||||||||| |||| | | ||||||||||| | |||||| |||| |||||| |||||||||||||||||||    
T  22747181 aaataaaaaccgcaaaccgaatcaaaccatgcggttgaataaaaaattgatccgaatacattcaaatcaaata 22747109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 12378931 - 12378856
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||| ||||||| ||||||||||||||||| ||||  |||||||||||| ||| |||| | ||||||||||||||    
T  12378931 acataaaccaaattaaaaatgtggacaaaaattaattctattttgtaagaaatgtaaaatactaagattttatcat 12378856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 14652692 - 14652767
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||| | |||||  ||||||| | |||||| |||||||||||| || ||||||||||||||||||||||    
T  14652692 acatagaccaacttaaaaacatggacaatatgtaatcctattttgtaagaaattcaaaagattaagattttatcat 14652767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 40692714 - 40692761
Alignment:
Q  49 acaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  40692714 acaaaaagtaatcatattttgtaagaaatacaaaagactaagatttta 40692761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 691253 - 691123
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaata 326  Q
    |||||||||||| | ||||||||| ||||||  |||| ||||||||||||   ||| |||||| |||||| |||||| |  |||||||||| | |||  |    
T  691253 atatgtttaattaacatttttcttttgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaatcaaaccaaaccatgcggttgagca 691154  T
Q  327 taaaaatgatccaaatacattcaaatcaaat 357  Q
      |||||||||||| ||||| | ||||||||    
T  691153 agaaaatgatccaattacatccgaatcaaat 691123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 18845751 - 18845820
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    ||||||| ||||| ||||||||||||| ||||||||  |||||||||||| ||| |||||| ||||||||    
T  18845751 acatagatcaaattaaaaatgtggacataaagtaattctattttgtaagaaatgtaaaagactaagattt 18845820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 34087626 - 34087703
Alignment:
Q  8 cgaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    |||| ||| |||| |||||| |||||||||| ||||  || ||||||||||||||||||||| |||| || |||||||    
T  34087626 cgaacaatgttctgaactacgtagaccaaattaaaacatgcacaaaaagtaatcatattttgaaagaaatacaaaaga 34087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 40109438 - 40109393
Alignment:
Q  56 gtaatcatattttgtaagatatgcaaaaga-ttaagattttatcat 100  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  40109438 gtaatcatattttgtaagagatgcaaaagatttaagattttatcat 40109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 11402826 - 11402906
Alignment:
Q  21 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||||||| | |||||  |||||||||  |||||||||||||||||| | | |||||| ||||||||||||||    
T  11402826 caacaacatagaccaagttaaaaacatggacaaaacataatcatattttgtaagaaaagtaaaagactaagattttatcat 11402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 357
Target Start/End: Original strand, 18432535 - 18432659
Alignment:
Q  233 ttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaatataaaaa 332  Q
    |||||| || ||||| |||||||||  |||| |||| |||||||   ||| ||||||||||||| |||| | |  ||||| |||| | |||||| |||||    
T  18432535 ttaattaatgttttttttatgttgcggtttggtttgatttggttcggttgataaaataaaaaccgcaaaccaaaccaaactatgcggttgaatacaaaaa 18432634  T
Q  333 tgatccaaatacattcaaatcaaat 357  Q
    | || ||||||||| ||||||||||    
T  18432635 taattcaaatacatccaaatcaaat 18432659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 34880982 - 34880914
Alignment:
Q  208 gagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtttggtt 276  Q
    ||||||||||| | ||  ||||| ||||||| || |||||||||||||||  |||||||||||||||||    
T  34880982 gagtattggtttaagtggcatatatttaattaatgtttttcttatgttgcggtttgatttggtttggtt 34880914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 28224713 - 28224639
Alignment:
Q  22 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||| |||||||||| |||||||||||||| ||||    |||||||||||| || ||||||| ||| ||||||    
T  28224713 aactacgtagaccaaattaaaatgtggacaaatagtagatttattttgtaagaaatacaaaagactaaaatttta 28224639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 36567944 - 36568046
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga-ttaagattttatca-tct-taaaagttcaagtag 117  Q
    ||||||| ||||||||||  ||| |  ||| ||||||||||||||||||||||| || ||||||| | || ||||||||| ||| ||| |||||||||||    
T  36567944 caactacgtagaccaaatttaaacgcagaccaaaagtaatcatattttgtaagaaatacaaaagactaaatattttatcattctctaagagttcaagtag 36568043  T
Q  118 tac 120  Q
    |||    
T  36568044 tac 36568046  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 4414445 - 4414526
Alignment:
Q  16 attctcaactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    |||||||||||||| || |||||  |||| ||| |||||  ||||||||||||||||| | || ||||||| ||||||||||    
T  4414445 attctcaactacatggaacaaatttaaaacgtgaacaaatggtaatcatattttgtaaaaaatacaaaagactaagatttta 4414526  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 6595372 - 6595421
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggtt 276  Q
    |||||||||||| | ||||||||||||||||  |||| ||||||||||||    
T  6595372 atatgtttaattaacatttttcttatgttgcggtttggtttggtttggtt 6595421  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 40331129 - 40331009
Alignment:
Q  225 acatatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaaccacaaatccactcaaaccatgcagatgaa 324  Q
    ||||||||||||||  | ||||| |||||| ||  |||| ||| ||||| || | ||| |||||||||||||||||| | | | |||| || ||| |||     
T  40331129 acatatgtttaattagtgttttt-ttatgtagcggtttggtttagtttgattctgttggtaaaataaaaaccacaaaccgaattaaactatacagttgag 40331031  T
Q  325 tataaaaatgatccaaatacat 346  Q
    || |||||||||||||||||||    
T  40331030 taaaaaaatgatccaaatacat 40331009  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 41455110 - 41455155
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 74  Q
    ||||||||||  ||| | ||||||||||||||||||||||||||||    
T  41455110 tagaccaaatttaaacgcggacaaaaagtaatcatattttgtaaga 41455155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 4414658 - 4414706
Alignment:
Q  225 acatatgtttaattcatatttttcttatgttgcaatttgatttggtttg 273  Q
    |||||||||||||| || |||||||||||||| | |||| |||||||||    
T  4414658 acatatgtttaattaatgtttttcttatgttgtagtttggtttggtttg 4414706  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 6400051 - 6400126
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 96  Q
    ||||||| |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||| ||| ||||||    
T  6400051 caactacgtagaccaaattaaaacgtggacaaaaagtaatcttattttgtaagaaatacaaaagactaaaatttta 6400126  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 13532103 - 13532049
Alignment:
Q  46 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||  |||||| |||||||||||| |||||||||||||||||||||||||    
T  13532103 tggacaaatcgtaatcctattttgtaagaaatgcaaaagattaagattttatcat 13532049  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 31945295 - 31945218
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    ||||||||||| |||||||||| |||| ||||||||||| |||||| | ||||||||| || ||||||| ||| ||||    
T  31945295 ttctcaactacgtagaccaaattaaaacgtggacaaaaattaatcaaactttgtaagaaatacaaaagactaaaattt 31945218  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 20500794 - 20500869
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||| | |||||  ||||||||| ||||   |||||||||||| |||||||||||||||||||||||||    
T  20500794 acatagaccaagttaaaaacatggacaaaacgtaagtttattttgtaagaaatgcaaaagattaagattttatcat 20500869  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 22414032 - 22414095
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaag 84  Q
    ||||||||||||||| || |||| |||||||||||||||||  ||||||||||| || ||||||    
T  22414032 caactacatagaccagattaaaacgtggacaaaaagtaatctcattttgtaagaaatacaaaag 22414095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 7169928 - 7169872
Alignment:
Q  29 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||| |||| |||| ||||||||||| |||||||||||||||||| || |||||||    
T  7169928 tagactaaattaaaacgtggacaaaaaataatcatattttgtaagaaatacaaaaga 7169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 17306595 - 17306670
Alignment:
Q  26 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||| |||||| |||||| |||||||||||||||  |||| ||||||| ||| |||||| |||||||| |||||    
T  17306595 acataggccaaattaaaaatatggacaaaaagtaattctattatgtaagaaatgtaaaagactaagatttcatcat 17306670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4563109 - 4563163
Alignment:
Q  40 aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    |||||||||||||||||||||| |||| | ||| | ||| |||||||||||||||    
T  4563109 aaaatgtggacaaaaagtaatcctattatttaataaatgtaaaagattaagattt 4563163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 8064737 - 8064799
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||||||||||||||||||||||  |||| ||||||| ||| ||| || |||||||| |||||    
T  8064737 taaaaatgtggacaaaaagtaattctattatgtaagaaatgtaaacgactaagatttcatcat 8064799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 13092255 - 13092289
Alignment:
Q  51 aaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||||||| |||||||||||||||||||||||    
T  13092255 aaaaagtaatcctattttgtaagatatgcaaaaga 13092289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 13531915 - 13531866
Alignment:
Q  227 atatgtttaattcatatttttcttatgttgcaatttgatttggtttggtt 276  Q
    |||||||||||| | ||||||||||||||||  |||| ||||||||||||    
T  13531915 atatgtttaattaacatttttcttatgttgcggtttggtttggtttggtt 13531866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 14940409 - 14940349
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 98  Q
    |||||| ||| |||||||||||| ||||| ||||||| ||| |||| | ||||||||||||    
T  14940409 taaaaacgtgaacaaaaagtaattatattatgtaagaaatgtaaaacactaagattttatc 14940349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 11377510 - 11377434
Alignment:
Q  25 tacatagaccaaa-taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||| ||| ||||| |||||||||||| ||||| |||| ||||||| || ||||||| ||||||||||||||    
T  11377510 tacatagactaaactaaaattgtggacaaaaaataatcctattctgtaagaaatacaaaagactaagattttatcat 11377434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 30514777 - 30514697
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagta 116  Q
    |||||| ||||||||||| |||| ||||| || |||| || ||||||||||||||||||||| ||| ||||||||||||||    
T  30514777 taaaaacgtggacaaaaactaataatattctgcaagaaatacaaaagattaagattttatcattctctaaaagttcaagta 30514697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 15320414 - 15320345
Alignment:
Q  51 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat---cttaaaagttcaagtag 117  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| |||   || ||||||||||||||    
T  15320414 aaaaagtaatcatattttgtaagaaatacaaaagactaagattttaacattcactaaaaagttcaagtag 15320345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 21734343 - 21734276
Alignment:
Q  33 ccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    |||| ||||||| ||||||||| ||||||||||| ||||||| ||| |||||| ||| ||||||||||    
T  21734343 ccaattaaaaatatggacaaaaggtaatcatattctgtaagaaatgtaaaagaataatattttatcat 21734276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 1331241 - 1331321
Alignment:
Q  39 aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat--cttaaaagttcaagtag 117  Q
    ||||| ||||||||||||||||  |||| ||||||| ||| |||||| ||||||||||| ||   ||||||||||||||||    
T  1331241 aaaaacgtggacaaaaagtaattctattatgtaagaaatgtaaaagactaagattttattattctttaaaagttcaagtag 1331321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 10242563 - 10242514
Alignment:
Q  51 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||||||||| |||||||||| |||||||| |||| |||||||||||    
T  10242563 aaaaagtaatcatgttttgtaagagatgcaaaatattatgattttatcat 10242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 11678226 - 11678290
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| |||| |||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  11678226 caactacgtagagcaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 11678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 11695704 - 11695768
Alignment:
Q  21 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||| |||| |||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  11695704 caactacgtagagcaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 11695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 5862526 - 5862458
Alignment:
Q  17 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 85  Q
    ||||||||||  |||||||||| ||||  |||| |||||||||||  ||||||||||| || |||||||    
T  5862526 ttctcaactaagtagaccaaattaaaacatggataaaaagtaatccaattttgtaagaaatacaaaaga 5862458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 17762994 - 17763050
Alignment:
Q  38 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 94  Q
    |||||||||||||||||||||||| |||| | ||||| ||| |||||| ||| ||||    
T  17762994 taaaaatgtggacaaaaagtaatcctattatataagaaatgtaaaagactaacattt 17763050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 44085744 - 44085796
Alignment:
Q  48 gacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 100  Q
    ||||||| |||||| |||||||||||| || ||||||| | ||||||||||||    
T  44085744 gacaaaacgtaatcctattttgtaagaaatacaaaagactgagattttatcat 44085796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 428066 - 428152
Alignment:
Q  208 gagtattggttcacgtcacatatgtttaattcatatttttcttatgttgcaatttgatttggtttggttatattgctaaaataaaaa 294  Q
    ||||||||||| | || ||||||||||||||  ||||||||| ||||||  |||||||||||||| |||   ||| |||||||||||    
T  428066 gagtattggtttatgtgacatatgtttaattattatttttctgatgttgagatttgatttggtttagttcggttggtaaaataaaaa 428152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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