View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232_low_21 (Length: 255)

Name: NF5232_low_21
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232_low_21
NF5232_low_21
[»] chr2 (22 HSPs)
chr2 (9-196)||(41251634-41251821)
chr2 (9-197)||(6403804-6403992)
chr2 (9-196)||(17445041-17445226)
chr2 (20-196)||(42439966-42440142)
chr2 (20-197)||(32127152-32127329)
chr2 (20-196)||(35962695-35962871)
chr2 (20-196)||(18981597-18981772)
chr2 (9-192)||(31581622-31581805)
chr2 (20-197)||(16405579-16405756)
chr2 (9-175)||(44084603-44084769)
chr2 (39-196)||(2958131-2958287)
chr2 (10-170)||(771005-771165)
chr2 (9-175)||(45418584-45418750)
chr2 (20-151)||(2285887-2286018)
chr2 (10-175)||(8147352-8147518)
chr2 (9-151)||(12756837-12756979)
chr2 (20-174)||(8059344-8059498)
chr2 (9-147)||(26162702-26162837)
chr2 (68-175)||(26237958-26238065)
chr2 (50-152)||(4555250-4555354)
chr2 (50-167)||(7072589-7072710)
chr2 (101-153)||(34905972-34906024)
[»] chr7 (21 HSPs)
chr7 (11-196)||(14777109-14777294)
chr7 (20-192)||(8394109-8394281)
chr7 (9-192)||(36630800-36630983)
chr7 (20-196)||(5555467-5555643)
chr7 (20-197)||(3114107-3114284)
chr7 (9-175)||(37002144-37002310)
chr7 (9-175)||(34389056-34389222)
chr7 (11-175)||(8867733-8867897)
chr7 (9-167)||(35090177-35090335)
chr7 (10-157)||(38638237-38638384)
chr7 (9-172)||(26624749-26624913)
chr7 (20-175)||(33685565-33685720)
chr7 (9-153)||(40920003-40920147)
chr7 (9-169)||(43184468-43184628)
chr7 (9-152)||(36658205-36658348)
chr7 (9-175)||(7002726-7002892)
chr7 (9-175)||(7048597-7048763)
chr7 (50-119)||(10868514-10868585)
chr7 (101-189)||(26502797-26502885)
chr7 (101-189)||(26589829-26589917)
chr7 (131-163)||(10876829-10876861)
[»] chr5 (21 HSPs)
chr5 (9-196)||(26283318-26283505)
chr5 (9-197)||(36293621-36293809)
chr5 (9-196)||(39434676-39434863)
chr5 (10-192)||(1776377-1776559)
chr5 (20-198)||(10033905-10034083)
chr5 (20-193)||(13817960-13818133)
chr5 (9-158)||(16155015-16155164)
chr5 (20-197)||(39657517-39657694)
chr5 (25-196)||(3155647-3155818)
chr5 (9-174)||(19985941-19986106)
chr5 (9-175)||(12278860-12279026)
chr5 (9-175)||(17332551-17332717)
chr5 (9-175)||(37254642-37254808)
chr5 (20-146)||(16333887-16334013)
chr5 (9-175)||(31680368-31680534)
chr5 (9-162)||(33430335-33430488)
chr5 (21-175)||(31501728-31501882)
chr5 (9-153)||(43068900-43069044)
chr5 (9-174)||(36291373-36291538)
chr5 (50-163)||(28801300-28801415)
chr5 (140-193)||(14316641-14316694)
[»] chr4 (38 HSPs)
chr4 (9-196)||(20129290-20129477)
chr4 (9-197)||(13012167-13012355)
chr4 (9-196)||(47500753-47500940)
chr4 (9-196)||(26439279-26439466)
chr4 (9-196)||(34407284-34407471)
chr4 (9-196)||(25930688-25930875)
chr4 (9-192)||(36382346-36382528)
chr4 (9-196)||(43355884-43356071)
chr4 (20-196)||(29319716-29319892)
chr4 (21-174)||(43143596-43143749)
chr4 (20-173)||(3292907-3293060)
chr4 (27-175)||(10352902-10353050)
chr4 (20-193)||(40528996-40529171)
chr4 (11-175)||(50205079-50205243)
chr4 (9-175)||(30216742-30216908)
chr4 (21-193)||(17511245-17511417)
chr4 (9-174)||(48989330-48989495)
chr4 (20-175)||(6690246-6690401)
chr4 (21-176)||(42333788-42333943)
chr4 (9-170)||(29995983-29996144)
chr4 (9-202)||(6235506-6235687)
chr4 (25-175)||(30077647-30077797)
chr4 (9-159)||(44156668-44156818)
chr4 (22-152)||(26448077-26448206)
chr4 (21-173)||(28877262-28877414)
chr4 (21-152)||(35545977-35546108)
chr4 (9-141)||(1817752-1817884)
chr4 (21-98)||(13392893-13392970)
chr4 (21-98)||(13396032-13396109)
chr4 (50-174)||(30109958-30110084)
chr4 (76-174)||(45194178-45194276)
chr4 (79-164)||(48129978-48130063)
chr4 (91-193)||(27363344-27363446)
chr4 (83-151)||(6254569-6254637)
chr4 (135-197)||(7769307-7769369)
chr4 (139-175)||(49908782-49908818)
chr4 (140-175)||(6212029-6212064)
chr4 (139-175)||(5517494-5517530)
[»] chr3 (19 HSPs)
chr3 (10-196)||(6269427-6269613)
chr3 (9-196)||(19390126-19390313)
chr3 (9-196)||(22968444-22968631)
chr3 (9-196)||(39771770-39771957)
chr3 (21-192)||(34084134-34084305)
chr3 (9-175)||(45182982-45183148)
chr3 (9-197)||(11018212-11018400)
chr3 (20-175)||(6930905-6931060)
chr3 (9-172)||(27935182-27935345)
chr3 (25-175)||(19565517-19565667)
chr3 (25-175)||(45335876-45336025)
chr3 (9-193)||(40081741-40081922)
chr3 (9-175)||(33040954-33041120)
chr3 (21-196)||(6503581-6503756)
chr3 (9-175)||(35514267-35514429)
chr3 (116-192)||(22922141-22922217)
chr3 (50-153)||(5135292-5135397)
chr3 (9-56)||(22922215-22922262)
chr3 (139-175)||(6890999-6891035)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-196)||(480457-480644)
[»] chr6 (18 HSPs)
chr6 (9-196)||(398597-398784)
chr6 (20-196)||(34948769-34948945)
chr6 (20-196)||(13837801-13837977)
chr6 (9-175)||(28996731-28996897)
chr6 (9-175)||(18339107-18339273)
chr6 (25-170)||(29743289-29743434)
chr6 (9-160)||(33229336-33229487)
chr6 (193-255)||(25512558-25512620)
chr6 (193-255)||(25546650-25546712)
chr6 (193-255)||(26057589-26057651)
chr6 (193-255)||(26077559-26077621)
chr6 (193-255)||(26144535-26144597)
chr6 (193-255)||(25484726-25484788)
chr6 (193-255)||(25581389-25581451)
chr6 (80-175)||(31028435-31028530)
chr6 (91-175)||(24697899-24697983)
chr6 (140-175)||(13647018-13647053)
chr6 (101-161)||(3050094-3050154)
[»] chr1 (11 HSPs)
chr1 (9-196)||(26144235-26144422)
chr1 (20-196)||(7433425-7433601)
chr1 (9-189)||(32982056-32982236)
chr1 (9-193)||(42310941-42311125)
chr1 (9-172)||(3828988-3829150)
chr1 (10-175)||(17445314-17445479)
chr1 (9-168)||(321377-321536)
chr1 (20-175)||(35907553-35907708)
chr1 (70-196)||(23313218-23313345)
chr1 (50-193)||(41972314-41972458)
chr1 (50-147)||(33489716-33489815)
[»] scaffold2142 (1 HSPs)
scaffold2142 (9-197)||(501-689)
[»] scaffold0069 (1 HSPs)
scaffold0069 (9-197)||(17821-18009)
[»] chr8 (14 HSPs)
chr8 (9-196)||(39914495-39914681)
chr8 (20-192)||(15838270-15838441)
chr8 (9-193)||(29728386-29728570)
chr8 (9-193)||(3648794-3648978)
chr8 (9-172)||(16788025-16788188)
chr8 (21-198)||(34136837-34137014)
chr8 (21-175)||(4404009-4404163)
chr8 (9-175)||(23402109-23402275)
chr8 (9-175)||(36408552-36408718)
chr8 (9-153)||(9877243-9877387)
chr8 (9-144)||(42230971-42231104)
chr8 (21-175)||(2729208-2729362)
chr8 (50-160)||(3435285-3435397)
chr8 (83-156)||(40470567-40470640)
[»] scaffold0502 (1 HSPs)
scaffold0502 (9-175)||(5231-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (9-175)||(31481-31647)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-153)||(52948-53092)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 41251634 - 41251821
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 41251733  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  41251734 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 6403804 - 6403992
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 6403903  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    || ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6403904 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgg 6403992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 17445041 - 17445226
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17445140  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  17445141 tgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 42440142 - 42439966
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  42440142 gtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 42440043  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  42440042 gtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 32127152 - 32127329
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| |    
T  32127152 gtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgg 32127251  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    || |||||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||||    
T  32127252 gtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatgg 32127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 35962871 - 35962695
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||| |    
T  35962871 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgg 35962772  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||| | ||||||||||||||||||    
T  35962771 gttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 18981772 - 18981597
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |    
T  18981772 gtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgg 18981673  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||||||| ||||||| | ||||||||||||||||||    
T  18981672 gttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgccc-gggtcgccatacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 31581622 - 31581805
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 31581721  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    ||| ||||| || ||||| |||| |||||||| ||||| ||||||  ||||||||||||| |||||| | || |||||||||||    
T  31581722 tgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgccatacagtagaaccgcc 31581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 16405756 - 16405579
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||  ||||| |    
T  16405756 gtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgg 16405657  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||||||| ||||| | | | |||||||||||||||||    
T  16405656 gttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatgg 16405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 44084603 - 44084769
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 44084702  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    || |||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  44084703 tgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 44084769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 2958131 - 2958287
Alignment:
Q  39 aaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaa 138  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  139 aattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 771165 - 771005
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 109  Q
    ||||||| | ||||||| ||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 771066  T
Q  110 ggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggg 170  Q
    || ||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||    
T  771065 gggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccggg 771005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 45418750 - 45418584
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45418651  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| |||||  | ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45418650 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45418584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 2286018 - 2285887
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||    
T  2286018 gtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttg 2285919  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcga 151  Q
    ||||  ||||||||||||||||||||||||||    
T  2285918 gttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 8147518 - 8147352
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaatttt-cagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||| | |||||||||||| ||||||||||||| ||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaa 8147419  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | |||||||  |||| || ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  8147418 ttgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 8147352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 12756837 - 12756979
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaa 12756936  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcga 151  Q
    | | ||||| ||||| || ||||| ||||||||||||||||||    
T  12756937 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcga 12756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 8059344 - 8059498
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||| ||||||||||||||||||| ||||| ||||  |||||| |||||||| |||| |||||||||||||||||||| ||||||||| | ||||| |    
T  8059344 gtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgg 8059443  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    ||||| | ||||||||||||||||||||| ||||  |||||| || |||||||||    
T  8059444 gttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcg 8059498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 26162702 - 26162837
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||| ||||||||||||   ||| ||||||||||  || ||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  26162702 gagatgaacccgtcaataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaa 26162798  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    |||  |||| |||||| ||||||||| ||||||||||||    
T  26162799 tgggtttttgggttgaatttaatgtgtaaaaattatcga 26162837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 26238065 - 26237958
Alignment:
Q  68 ttttcagatt-gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcc 166  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||  | |||| |||||||| |||||||||||| ||||||||||||    
T  26238065 ttttcagatttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcc 26237967  T
Q  167 cggggtcgc 175  Q
    |||||||||    
T  26237966 cggggtcgc 26237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 4555250 - 4555354
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||||||||||| ||||||||||||  ||||||| |||||||||||||| |||||||| |  ||||| ||||| |||| ||||||||||||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcga 4555349  T
Q  148 tcgag 152  Q
    |||||    
T  4555350 tcgag 4555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 7072589 - 7072710
Alignment:
Q  50 cctatttacgtgtgacaattttcaga--ttgcccaaatttttctttttgtaaatgtg--ttaatggactttttggttgagtttaatgtgcaaaaattatc 145  Q
    |||||||||||| || ||||||||||  ||| ||||  |||||||||| ||| ||||  ||||||| ||||| |||||||||||||||  ||||||||||    
T  7072589 cctatttacgtgcgagaattttcagaatttgtccaatattttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatc 7072688  T
Q  146 gatcgagctcgggcgaccgccc 167  Q
    |||||||| |||||||||||||    
T  7072689 gatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 34906024 - 34905972
Alignment:
Q  101 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagc 153  Q
    ||||||||||| ||||| ||||  | |||||||||||||||||||||||||||    
T  34906024 tgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagc 34905972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 14777109 - 14777294
Alignment:
Q  11 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 14777208  T
Q  111 gactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
      ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  14777209 agcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 8394281 - 8394109
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8394281 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttg 8394182  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  8394181 gttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 36630983 - 36630800
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36630884  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||    
T  36630883 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 5555643 - 5555467
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  5555643 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgg 5555544  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  5555543 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 3114107 - 3114284
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  3114107 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 3114206  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||| | | |||||||||||||||||||    
T  3114207 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatgg 3114284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 37002144 - 37002310
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37002243  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | ||||||| | ||| || |||||||||||||||||||||||||  ||  |||||||||||||||||    
T  37002244 ttgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgc 37002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 34389056 - 34389222
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||| ||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34389155  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |   ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  34389156 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 34389222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 8867733 - 8867897
Alignment:
Q  11 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 110  Q
    |||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||     
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaatt 8867832  T
Q  111 gactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | ||||| | ||| || |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  8867833 ggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 8867897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 35090335 - 35090177
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaa 35090236  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgccc 167  Q
    | | ||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||    
T  35090235 ttggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 38638237 - 38638384
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 109  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 38638336  T
Q  110 ggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgg 157  Q
     ||||||| |||||  | |||||||||||||||||| |||||||||||    
T  38638337 tgacttttgggttggatctaatgtgcaaaaattatcaatcgagctcgg 38638384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 26624913 - 26624749
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 26624814  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcg-atcgagctcgggcgaccgcccggggt 172  Q
    |  |||||| | ||| || |||| |||||||||||||| ||||||| | ||||||||||||||||    
T  26624813 ttaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggt 26624749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 33685720 - 33685565
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||   |||| ||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |    
T  33685720 gtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgg 33685621  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||    
T  33685620 gttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgc 33685565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 40920003 - 40920147
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 40920102  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagc 153  Q
    | | ||||| |||| | | ||||||||||||||||||||||||||    
T  40920103 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagc 40920147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 43184468 - 43184628
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaa 43184567  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgg 169  Q
    | | ||||| |||| ||| | ||| | |||||||||||||||||| || ||||||||||||    
T  43184568 ttggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccgg 43184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 36658348 - 36658205
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||| | | ||||||    
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaa 36658249  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgag 152  Q
    | | ||||| ||||| ||  ||||||||||||||||||||||||    
T  36658248 ttggcttttcggttgggtccaatgtgcaaaaattatcgatcgag 36658205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 7002892 - 7002726
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||  ||||||||| ||||||| |||||| |||||| |||||||||| ||||||||  ||||||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7002793  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || ||||||  ||||||  |||||||||| ||||||||||| |||||||||    
T  7002792 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgc 7002726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 7048763 - 7048597
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||  ||||||||| ||||||| |||||| |||||| |||||||||| ||||||||  ||||||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7048664  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || ||||||  ||||||  |||||||||| ||||||||||| |||||||||    
T  7048663 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgc 7048597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 10868514 - 10868585
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||| || |||| ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  10868514 cctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttttg 10868585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 26502885 - 26502797
Alignment:
Q  101 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaacc 189  Q
    ||||||||||| ||||| ||||| | ||||| ||||||||   |||||||||| |||||||| ||| |||||||| ||||||| |||||    
T  26502885 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 26589829 - 26589917
Alignment:
Q  101 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaacc 189  Q
    ||||||||||| ||||| ||||| | ||||| ||||||||   |||||||||| |||||||| ||| |||||||| ||||||| |||||    
T  26589829 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26589917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 10876829 - 10876861
Alignment:
Q  131 tgtgcaaaaattatcgatcgagctcgggcgacc 163  Q
    ||||||||||||||||||||||| |||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgacc 10876861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 26283318 - 26283505
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26283417  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  26283418 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 36293621 - 36293809
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36293720  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||| ||||| |||||||| |||||| ||||||||||||||||||  ||| ||||||| ||||||||| |||||||||||||||||||||    
T  36293721 tgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatgg 36293809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 39434863 - 39434676
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaa 39434764  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  39434763 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 1776377 - 1776559
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 109  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaat 1776476  T
Q  110 ggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||    
T  1776477 ggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 10034083 - 10033905
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  10034083 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 10033984  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatggc 198  Q
    ||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||||||||||| ||||    
T  10033983 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgcccctggc 10033905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 13818133 - 13817960
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  13818133 gtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 13818034  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||    
T  13818033 gttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 16155164 - 16155015
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaa 16155065  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcggg 158  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  16155064 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 39657517 - 39657694
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |    
T  39657517 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgg 39657616  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||||||| |||||||||||||||||| ||||||| ||  |||||| | |||||||| | |  ||||||||||||||||    
T  39657617 gttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtagaaccgcccatgg 39657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 3155647 - 3155818
Alignment:
Q  25 tagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttga 124  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||    
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttga 3155746  T
Q  125 gtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||||| |||||||| || ||||||||||||| |||| | ||| ||||||||||||||    
T  3155747 gtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 19986106 - 19985941
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||| |||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaa 19986007  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||| |||||    
T  19986006 tggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 12278860 - 12279026
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 12278959  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | | ||| ||||| || |||||||||||||||||||||||||  |||||||||||||||| ||||    
T  12278960 ttggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgc 12279026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 17332551 - 17332717
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 17332650  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || |||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  17332651 ttggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgc 17332717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 37254808 - 37254642
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37254709  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | ||||||| ||||| || ||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  37254708 ttgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgc 37254642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 16333887 - 16334013
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  16333887 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 16333986  T
Q  120 gttgagtttaatgtgcaaaaattatcg 146  Q
    ||||| | |||||||||||||||||||    
T  16333987 gttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 31680534 - 31680368
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 31680435  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || ||||| | |||||||||||||||||| |||||||||||||||||||||    
T  31680434 ttggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 31680368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 33430488 - 33430335
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33430389  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgac 162  Q
    | | ||||| ||||| || ||||| |||||||||||||||||||| ||||||||    
T  33430388 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 31501728 - 31501882
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||||||||||||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||    
T  31501728 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 31501827  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||| || |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  31501828 ttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgc 31501882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 43069044 - 43068900
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | | |||||||||||||||||||||||| |||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  43069044 gagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaa 43068945  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagc 153  Q
    ||||||||| ||||| || ||||||| ||||||||| ||||||||    
T  43068944 tggacttttgggttgggtctaatgtgaaaaaattattgatcgagc 43068900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 36291538 - 36291373
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||| ||||||||||||  ||||||||||  |||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaa 36291439  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    || |||||| ||||   | ||||||||||||||||| |||||| | ||| ||||||||||| ||||    
T  36291438 tgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcg 36291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 28801415 - 28801300
Alignment:
Q  50 cctatttacgtgtgacaattttcagattg--cccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||| ||||||| |||||||| |||   ||||||||||||||||||||| ||||||||||| ||||| | |||  | ||||||||||||||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcga 28801316  T
Q  148 tcgagctcgggcgacc 163  Q
    ||||||  ||||||||    
T  28801315 tcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  140 attatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    ||||||||||||||  ||||||||||||| | |||| | |||||||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 20129477 - 20129290
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20129477 gagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 20129378  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  20129377 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 13012355 - 13012167
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 13012256  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||  |||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13012255 tgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgg 13012167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 47500940 - 47500753
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaa 47500841  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  47500840 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 26439279 - 26439466
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26439279 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26439378  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26439379 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 34407284 - 34407471
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34407284 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 34407383  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34407384 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 34407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 25930875 - 25930688
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 25930776  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| | ||||||||||||||||||    
T  25930775 tgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 36382346 - 36382528
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctttt-gtaaatgtgttaa 36382444  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  36382445 tggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 43356071 - 43355884
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43356071 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 43355972  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||| ||||||||||||    
T  43355971 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatg 43355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 29319716 - 29319892
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| |    
T  29319716 gtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgg 29319815  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| ||||||||||||||||||||||||||  || |||||||| |||||| | | ||||||||||||||||||    
T  29319816 gttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatg 29319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 43143596 - 43143749
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||    
T  43143596 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 43143695  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  43143696 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 43143749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 3292907 - 3293060
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||| |    
T  3292907 gtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgg 3293006  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtc 173  Q
    |||| || ||||| |||||||||||||||||||| |||||||||||||||||||    
T  3293007 gttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtc 3293060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 10352902 - 10353050
Alignment:
Q  27 gtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagt 126  Q
    ||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  127 ttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
     ||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgc 10353050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 40529171 - 40528996
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||||||||   |||| |    
T  40529171 gtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttag 40529072  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgac--cgcccggggtcgctacacggtagaaccgccc 193  Q
    |||||||||||||||||||||||||||||||||  ||| ||||  ||||| ||||||| | |||||||||||||||    
T  40529071 gttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 50205079 - 50205243
Alignment:
Q  11 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 110  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||| |||||||||     
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaatt 50205178  T
Q  111 gactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | ||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50205179 ggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgc 50205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 30216742 - 30216908
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 30216841  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |   ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  30216842 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 30216908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 17511245 - 17511417
Alignment:
Q  21 tcaatagtgtgctaaataaaatt-ccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||| |||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |    
T  17511245 tcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 17511344  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    ||||||| |||||||||||||||||||||||||   ||||||||| || ||||||| | |||||||||||||||    
T  17511345 gttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccg-ccagggtcgccatacggtagaaccgccc 17511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 48989495 - 48989330
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 48989396  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    |||||||||  |||| ||||||||||||||||||||||||||| | |||  |||||||||| ||||    
T  48989395 tggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcg 48989330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 6690246 - 6690401
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||| | |||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||| |    
T  6690246 gtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgg 6690345  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||| || ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6690346 gttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6690401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 42333788 - 42333943
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||    
T  42333788 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 42333887  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgct 176  Q
    |||||| ||||||||||||||||||||| |||| ||| |||||||||||| |||||    
T  42333888 ttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgct 42333943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 29995983 - 29996144
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||| ||||||||||| ||| |||||| ||||  | ||||||||||||||||||||||||||||| |||||||||||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaa 29996082  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggg 170  Q
    |||||||||||||||||| |||||| ||||||||||||||||||  ||| |||||| |||||    
T  29996083 tggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccggg 29996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 6235687 - 6235506
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 6235588  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatggctaaa 202  Q
    ||||||||| |            ||||||||||||||| |||||| || |||||||||| |  |||| | ||||||||||||||| ||||||||    
T  6235587 tggacttttgg------------gtgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgcccttggctaaa 6235506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 30077647 - 30077797
Alignment:
Q  25 tagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttga 124  Q
    ||||||||||||||||||| ||||||||||||  |||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||     
T  30077647 tagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgg 30077746  T
Q  125 gtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    || |||||||||||| |||||||| ||||  ||||||||||||| ||||||    
T  30077747 gtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcgc 30077797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 44156818 - 44156668
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||| ||||| |||||||||||||| ||||||||    
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaa 44156719  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggc 159  Q
    | | ||||| ||||| || ||||||||||||||||||| | |||| |||||    
T  44156718 ttggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 26448206 - 26448077
Alignment:
Q  22 caatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggt 121  Q
    |||||||||||||||||||||||| | ||||||||  || ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  26448206 caatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggt 26448108  T
Q  122 tgagtttaatgtgcaaaaattatcgatcgag 152  Q
    |   |||||||||||||||||||||||||||    
T  26448107 tagatttaatgtgcaaaaattatcgatcgag 26448077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 28877262 - 28877414
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| ||||||||||||||||| |||  ||||||||   ||||| ||    
T  28877262 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagcttttagg 28877361  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtc 173  Q
    |||| | |||||||||||||||||||||| ||| |  |||||||| |||||||    
T  28877362 ttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtc 28877414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 35546108 - 35545977
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | ||||| ||    
T  35546108 tcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttggg 35546009  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgag 152  Q
    ||| || | ||| ||||||||| |||||||||    
T  35546008 ttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 1817884 - 1817752
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | | |||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||||||||| ||||||| ||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaa 1817785  T
Q  109 tggactttttggttgagtttaatgtgcaaaaat 141  Q
    ||||||||| | |||  | ||||||||||||||    
T  1817784 tggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13392893 - 13392970
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgta 98  Q
    ||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13396032 - 13396109
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgta 98  Q
    ||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 30110084 - 30109958
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||| ||||||| | |||||| |||  | |||||||||||||||||||| ||||||||||| ||||  | ||| || ||||||||||||||||||||    
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcga 30109985  T
Q  148 tcgagctcgggcgaccgcccggggtcg 174  Q
    |||||  |||||||||| |||||||||    
T  30109984 tcgagtccgggcgaccgtccggggtcg 30109958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 45194276 - 45194178
Alignment:
Q  76 ttgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcg 174  Q
    ||||||||  |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||| | |||| |||||||    
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcg 45194178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 48130063 - 48129978
Alignment:
Q  79 cccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccg 164  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||| || |||| ||||||||||||||||||||| ||| ||||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  91 tttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccg 190  Q
    ||||||||| ||||||||||| ||||| ||||| |  |||| ||||||||   |||||||||| |||||||||||||| |||||| | |||||| |||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  191 ccc 193  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  83 aatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcga 151  Q
    ||||||| |||||| || ||||||||| | ||||| ||||| |||||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 7769369 - 7769307
Alignment:
Q  135 caaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||||||||||||||||||| |||||||||||| ||||||||   |||||  ||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatgg 7769307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 49908782 - 49908818
Alignment:
Q  139 aattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||||||||| |||||||||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgc 49908818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 6212029 - 6212064
Alignment:
Q  140 attatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgc 6212064  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 5517494 - 5517530
Alignment:
Q  139 aattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||||||||| | |||||||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgc 5517530  T

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Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 6269427 - 6269613
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 6269526  T
Q  110 ggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    || ||||| |||||||| |||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||||    
T  6269527 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 19390313 - 19390126
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 19390214  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    | ||||||| |||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||    
T  19390213 tagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

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Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 22968444 - 22968631
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaa 22968543  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  22968544 tgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatg 22968631  T

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Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 39771957 - 39771770
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39771957 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 39771858  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39771857 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 39771770  T

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Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 34084134 - 34084305
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34084134 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 34084233  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||||||||||    
T  34084234 ttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 45183148 - 45182982
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45183049  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  45183048 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45182982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 11018212 - 11018400
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||| ||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 11018311  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    | | ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||   |||||  ||||||||||||    
T  11018312 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatgg 11018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 6930905 - 6931060
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||| |    
T  6930905 gtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgg 6931004  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||  | ||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  6931005 gttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgc 6931060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 27935345 - 27935182
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||| |||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 27935246  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggt 172  Q
    ||  ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  27935245 tgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggt 27935182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 19565517 - 19565667
Alignment:
Q  25 tagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttga 124  Q
    ||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||     
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgg 19565616  T
Q  125 gtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    || ||||||||||||||||||||| || | |||||||||||||||| ||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgc 19565667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 45336025 - 45335876
Alignment:
Q  25 tagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttga 124  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||     
T  45336025 tagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaat-gactttttggttgg 45335927  T
Q  125 gtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    || ||||||| ||||||||||||| |||  |||||||||||||| ||||||    
T  45335926 gtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgc 45335876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 40081741 - 40081922
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||| ||||| |||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 40081839  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    | ||  |||||||||||| |||||| ||||||||||||||||||| |||||||||  || | ||||| | |||||||||||||||    
T  40081840 t-gagcttttggttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc-tccagagtcgccatacggtagaaccgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 33041120 - 33040954
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||  ||||||||||||||||||| ||||||||    
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaa 33041021  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |   ||||| ||||| || |||| ||||||||||||| ||||||| || ||||||||||||||||||    
T  33041020 ttagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgc 33040954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 6503581 - 6503756
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||| ||||||||||||||| ||| |||||||||| | ||||| ||||||||||||||  |||||||||||||||||| |||| |||| | ||||| ||    
T  6503581 tcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttggg 6503680  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    |||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||   |||||  |||||||||||    
T  6503681 ttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 35514429 - 35514267
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||| |||||||||||| |||||||||| || |||| |||||||| |||| |||||||||||||||||    ||||||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttg----tgtgttaa 35514334  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||| |||||  | || | ||| ||||||||||||||||| ||| |||||| ||||||||||    
T  35514333 tggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgc 35514267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 22922217 - 22922141
Alignment:
Q  116 tttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||| | ||||| ||||||||    
T  22922217 tttggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 5135397 - 5135292
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    |||||||  |||||| ||||||| ||||  | |||||||||||||||||||| ||||||||||  ||||| ||||| || |||||| ||||||| |||||    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcga 5135298  T
Q  148 tcgagc 153  Q
    ||||||    
T  5135297 tcgagc 5135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 22922262 - 22922215
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctattt 56  Q
    |||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctattt 22922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 6891035 - 6890999
Alignment:
Q  139 aattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgc 6890999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 480457 - 480644
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 480556  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  480557 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 398784 - 398597
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 398685  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  398684 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 34948769 - 34948945
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  34948769 gtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 34948868  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||    
T  34948869 gttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatg 34948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 13837977 - 13837801
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| |    
T  13837977 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgg 13837878  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| |||||| ||||||||||||||||| | || |||| ||||||||||||| | ||||||||||||||||||    
T  13837877 gttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 28996897 - 28996731
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 28996798  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | ||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28996797 ttgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 28996731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 18339273 - 18339107
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 18339174  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| | ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  18339173 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 18339107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 29743434 - 29743289
Alignment:
Q  25 tagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttga 124  Q
    ||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||     
T  29743434 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgg 29743335  T
Q  125 gtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggg 170  Q
    || ||||||||||||||||||||| |||| ||||| ||||||||||    
T  29743334 gtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccggg 29743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 33229336 - 33229487
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | | ||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  33229336 gagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaa 33229435  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcg 160  Q
    ||||||||| ||||| || |||||| ||||||| ||||||||||| ||||||    
T  33229436 tggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 25512620 - 25512558
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25512620 catggctaaagctaaaacaacaaattgttcataaatattagttttgcttaccgtattatctct 25512558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 25546712 - 25546650
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25546712 catggctaaagctaaaacaacaaattgttcataaatattagtttttcttaccgtattatctct 25546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 26057651 - 26057589
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26057651 catggctaaagctaaaacaacaaattgttcataaatattagttttctttaccgtattatctct 26057589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 26077621 - 26077559
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26077621 catggctaaagctaaaacaacaaattgttcataaatattagttttctttaccgtattatctct 26077559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 26144597 - 26144535
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26144597 catggctaaagctaaaacaacaaattgttcataaatattagttttccttactgtattatctct 26144535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 25484788 - 25484726
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  25484788 catggctaaagctaaaacaacaaattgttcagaaatattagttttccttaccatattatctct 25484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 25581451 - 25581389
Alignment:
Q  193 catggctaaagctaaaacaacaaattgttcataaatattagttttccttaccgtattatctct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  25581451 catggctaaagctaaaacaacaaattgttcataaatattagttttgcttactgtattatctct 25581389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 31028435 - 31028530
Alignment:
Q  80 ccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||| ||| |||||||||||||||||||||  ||||| |||||  | |||||||||||||||||||||||||  ||||| ||||| |||||||||    
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgc 31028530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 24697899 - 24697983
Alignment:
Q  91 tttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||| ||||||||||| ||||| ||||| |  ||||||| ||||||||||||| |||| |||||||  | ||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgc 24697983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 13647053 - 13647018
Alignment:
Q  140 attatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||||||||||||| |||||||||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgc 13647018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 3050154 - 3050094
Alignment:
Q  101 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcga 161  Q
    ||||||||||| ||||| ||||| | | |||||||||||||||| ||| |||| |||||||    
T  3050154 tgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgggcga 3050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 26144422 - 26144235
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 26144323  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26144322 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 7433601 - 7433425
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |    
T  7433601 gtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgg 7433502  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  7433501 gttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 32982056 - 32982236
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaa 32982155  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaacc 189  Q
    ||| ||||| ||||| || ||||||||||||||||||||||| || || |||||||||||||||||| | |||||||||||    
T  32982156 tgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 42310941 - 42311125
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||| || |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 42311040  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
     || ||||| |||||||| |||||||||||||||||||||||||| ||||||| || | |||||||| | |||||||||||||||    
T  42311041 cgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 3829150 - 3828988
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcca-gacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3829052  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggt 172  Q
    || |||||| ||||| ||||||||||||||||||||||||||| | || ||||||| |||||||    
T  3829051 tgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggt 3828988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 17445479 - 17445314
Alignment:
Q  10 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 109  Q
    ||||||| | ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 17445380  T
Q  110 ggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
     ||||||| |||||  | |||||| |||||||||| |||| ||| |||||||||||  ||||||||    
T  17445379 tgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgc 17445314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 321377 - 321536
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||| |||| ||||||||||||| |||||||||| | | ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaa 321476  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccg 168  Q
    ||||||||| |||||  | |||||  ||||||||||||||||||| ||| ||||||||||    
T  321477 tggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccg 321536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 35907708 - 35907553
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||| |||||||||||||| |||  |||| | ||||| |    
T  35907708 gtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgg 35907609  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||| || |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  35907608 gttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgc 35907553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 23313345 - 23313218
Alignment:
Q  70 ttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaa-aaattatcgatcgagctcgggcgaccgcccg 168  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||| |||| ||| ||||||| ||||| ||||||||    
T  23313345 ttcagattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T
Q  169 gggtcgctacacggtagaaccgcccatg 196  Q
     | |||| | ||||||||||||||||||    
T  23313245 agatcgccatacggtagaaccgcccatg 23313218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 41972314 - 41972458
Alignment:
Q  50 cctatttacgtgtgacaattttcagattgc--ccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||| ||||||| ||||||||||||    |||||||||||||||||||| ||||||||| | ||||| |||||  | ||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  148 tcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||||    
T  41972414 tcgagc-caggcgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 33489815 - 33489716
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||| ||||||| ||||||||||||  || |||||||||||||| |||| ||||||||||| ||||| | |||||| |||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 689 - 501
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 590  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  589 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatgg 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 18009 - 17821
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17910  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatgg 197  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||| ||| ||| ||| ||||||||| |||||||||||||||||||||    
T  17909 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatgg 17821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 39914681 - 39914495
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaa 39914583  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatg 196  Q
    ||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  39914582 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 15838441 - 15838270
Alignment:
Q  20 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttg 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15838441 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttt-gtaaatgtgttaatggactttttg 15838343  T
Q  120 gttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcc 192  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| | ||||||||||||||    
T  15838342 gttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgcc 15838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 29728386 - 29728570
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 29728485  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    ||  ||||| |||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||| | |||||||||||||||    
T  29728486 tgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 3648794 - 3648978
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaa 3648893  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgccc 193  Q
    ||| ||||| |||||||| ||||||| |||||||||||||||||| |||||||| | || || |||| | |||||||||||||||    
T  3648894 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgccc 3648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 16788025 - 16788188
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||| ||||||||    
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaa 16788124  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggt 172  Q
    | | ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  16788125 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggt 16788188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 34136837 - 34137014
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||| ||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  34136837 tcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 34136936  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgctacacggtagaaccgcccatggc 198  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||  |||| ||||||||    
T  34136937 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatggc 34137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 4404163 - 4404009
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| | ||||||| | ||||| ||    
T  4404163 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttggg 4404064  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  4404063 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgc 4404009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 23402275 - 23402109
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||| ||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 23402176  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| ||||| || |||| |||||| |||||||||||||| |||||||||||||||||||||    
T  23402175 ttggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 23402109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 36408718 - 36408552
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | | |||||||||| ||||||||||||  |||||||||  ||||| | |||||||| |||||| ||| |||||||||||||||||||||||    
T  36408718 gagatgaatccggcaatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaa 36408619  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||||||||| |||||  | |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  36408618 tggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 36408552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 9877387 - 9877243
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    ||||||||  || |||||||||||||||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  9877387 gagatgaatttgacaatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 9877288  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagc 153  Q
    | ||||||| ||||  || |||||||||||||||||| |||||||    
T  9877287 ttgacttttgggttaggtctaatgtgcaaaaattatcaatcgagc 9877243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 42231104 - 42230971
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||| | | ||| |||||||| |||||||||||||||||||||||||  |||||||    
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaa 42231007  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattat 144  Q
    |||||||||  ||||  |||||||||||||||||||    
T  42231006 tggacttttgagttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 2729208 - 2729362
Alignment:
Q  21 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 120  Q
    |||||||||||||||||||||||   |||||||||| ||| ||| | |||||| |||||| |||  ||||||||| ||| ||||||||||| ||||| |     
T  2729208 tcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttgga 2729307  T
Q  121 ttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    |||  ||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  2729308 ttggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgc 2729362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 3435397 - 3435285
Alignment:
Q  50 cctatttacgtgtgacaattttcagatt--gcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcga 147  Q
    ||||||| ||| ||| ||||||||||||  |||||||||||||||||||||| |||||||||||  |||| ||||| || ||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  148 tcgagctcgggcg 160  Q
    || ||| ||||||    
T  3435297 tcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 40470567 - 40470640
Alignment:
Q  83 aatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcg 156  Q
    ||||||| ||||| ||| |||||||||||||||||   ||| || |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagctcg 40470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 5397 - 5231
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 5298  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    | | ||||| | ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  5297 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 5231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 31647 - 31481
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| ||||||||||||||| |||||||||| | |||||||||| || |||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaa 31548  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 175  Q
    ||| ||||| ||||| || || ||||||||||||||||||||||| |||||||||| | ||||||||    
T  31547 tgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgc 31481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 53092 - 52948
Alignment:
Q  9 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 108  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 52993  T
Q  109 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagc 153  Q
    | | ||||| |||| | | ||||||||||||||||||||||||||    
T  52992 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagc 52948  T

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