View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_23 (Length: 251)
Name: NF5232_low_23
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 56298724 - 56298968
Alignment:
| Q |
1 |
ctcgatcgaatgtatgacggtgccagaactcctattatttgatcaattaa-----ctgaaagatgcatataagtgatgtcaacagcatatatggataatg |
95 |
Q |
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| T |
56298724 |
ctcgatcgaatgtatgacggtgccagaactcctattatttgatcaattaattaatctgaaagatgcatataagtgatgccaatagcatatatggataatg |
56298823 |
T |
|
| Q |
96 |
tctt-------tccaaaaattagatataggttggacggttaaattaaacacaaataccataaagatatacgagacaaacga-ttcttttttggtcggtac |
187 |
Q |
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| T |
56298824 |
tcttaagtctttccacaaattagatattggttggacggttaaactaaacacaaataccataaagatatacgagacaaacgatttcttttctggtcggtac |
56298923 |
T |
|
| Q |
188 |
atgattgacacatacaatacgacgaacttgtccttttttgccacc |
232 |
Q |
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| T |
56298924 |
aagattgacacatacaatacgacgaacttgtccttttttgccacc |
56298968 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 4286236 - 4286293
Alignment:
| Q |
52 |
tgaaagatgcatataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
109 |
Q |
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| T |
4286236 |
tgaacgatgcatataagtgatgccaataacatatatggataatgtctttccacaaatt |
4286293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 40220763 - 40220808
Alignment:
| Q |
64 |
ataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
109 |
Q |
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| T |
40220763 |
ataagtgatgccaatagcatatatggatgatgtctttccacaaatt |
40220808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 48590264 - 48590213
Alignment:
| Q |
58 |
atgcatataagtgatgtcaacagcatatatggataatgtctttccaaaaatt |
109 |
Q |
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|||||||||||||||| ||| ||||||||||||| ||||||||||| ||||| |
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| T |
48590264 |
atgcatataagtgatgccaatagcatatatggatgatgtctttccacaaatt |
48590213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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