View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_25 (Length: 247)
Name: NF5232_low_25
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 5269100 - 5268883
Alignment:
| Q |
28 |
taatattcagaatatcgagtgaatgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatag |
127 |
Q |
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| T |
5269100 |
taatattcagaatatcgagtgaatgaaaaacagagtatttttaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatag |
5269001 |
T |
|
| Q |
128 |
tgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactat |
227 |
Q |
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| T |
5269000 |
tgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactat |
5268901 |
T |
|
| Q |
228 |
cacaatattcttcgacat |
245 |
Q |
| |
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||||||||| || ||||| |
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| T |
5268900 |
cacaatattattagacat |
5268883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 5249798 - 5249648
Alignment:
| Q |
95 |
aaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcaca |
194 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
5249798 |
aaaaacataccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcaca |
5249699 |
T |
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| Q |
195 |
atcaattatggttttatcgaagtcgaaaactatcacaatattcttcgacat |
245 |
Q |
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| T |
5249698 |
atcaattatggttttatcaaaatcaaaaactacaacaatattattagacat |
5249648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 5272736 - 5272900
Alignment:
| Q |
81 |
atatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaa |
180 |
Q |
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||||||| ||| | ||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| | |||| |
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| T |
5272736 |
atatgaagagaataaaaaacataccatgacggaattccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaa |
5272835 |
T |
|
| Q |
181 |
ttatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattcttcgacat |
245 |
Q |
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| T |
5272836 |
ttatcactatcacaatcaatgatggttttgtcaaagtcaaaaataataacaatattattagacat |
5272900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 5276673 - 5276835
Alignment:
| Q |
47 |
tgaatgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaa |
146 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| || | |||| |||||||| | |||||| ||||||| || ||||||||||||||||| |
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| T |
5276673 |
tgaatgaaaaacagagtattttacaaaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaa |
5276772 |
T |
|
| Q |
147 |
caaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggtttt |
209 |
Q |
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|||||| |||||||| |||||||||| | |||||||||||| ||||||||||| || ||||| |
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| T |
5276773 |
caaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgtttt |
5276835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5269146 - 5269116
Alignment:
| Q |
1 |
ctgtatttccaaaaccaaaacacaagttaat |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5269146 |
ctgtatttccaaaaccaaaacacaagttaat |
5269116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 19569249 - 19569150
Alignment:
| Q |
113 |
aattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
19569249 |
aattgaaaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatc |
19569150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 26315722 - 26315844
Alignment:
| Q |
102 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaatt |
201 |
Q |
| |
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|||||||||| | || || ||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| || ||||| ||||| |
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| T |
26315722 |
taccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaata |
26315821 |
T |
|
| Q |
202 |
atggttttatcgaagtcgaaaac |
224 |
Q |
| |
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|||||||| || ||||||||||| |
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| T |
26315822 |
atggttttgtcaaagtcgaaaac |
26315844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 43110849 - 43110952
Alignment:
| Q |
121 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
220 |
Q |
| |
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||||| ||||||| |||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |||| ||||||||| || ||||| | |
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| T |
43110849 |
ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa |
43110948 |
T |
|
| Q |
221 |
aaac |
224 |
Q |
| |
|
|||| |
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|
| T |
43110949 |
aaac |
43110952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 43105420 - 43105463
Alignment:
| Q |
157 |
aaacctaattcatcaagaacccaattatcactatcacaatcaat |
200 |
Q |
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||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
43105420 |
aaaccaaactcatcaagaacccaattatcactatcacattcaat |
43105463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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