View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_26 (Length: 240)
Name: NF5232_low_26
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 55334841 - 55334612
Alignment:
| Q |
8 |
tgagatgaatactacggttaaaaatatttatagttttgtcgtgatactgagtgagtttccagtaaaaatataataataatannnnnnnacggtggccatg |
107 |
Q |
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| T |
55334841 |
tgagatgaatactacggttaaaaatatttatagttttgtcgtgatactgagtgagtttccagtaaaaatataataataatatttttttacggtggccatg |
55334742 |
T |
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| Q |
108 |
tccaaaatccttttagctaggatgtcctccattgttataa-atttatcttcttttcgttatatatatgtgatataataagtctgtttcttgctaaacaat |
206 |
Q |
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| T |
55334741 |
tccaaaatccttttagctaggatgtcctccattgttataacgtttatcttcttttcgt----tatatgtgatataataagtctgtttcttgctaaacaat |
55334646 |
T |
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| Q |
207 |
ccaagtgatcacacgttttttgtttcagtactca |
240 |
Q |
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| T |
55334645 |
ccaagtgatcacacgttttttgtttcagtactca |
55334612 |
T |
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