View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_30 (Length: 227)
Name: NF5232_low_30
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 40616846 - 40617053
Alignment:
| Q |
1 |
accaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtatt |
100 |
Q |
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| T |
40616846 |
accaacaaaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtatt |
40616945 |
T |
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| Q |
101 |
ctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacga |
200 |
Q |
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| T |
40616946 |
ctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacga |
40617045 |
T |
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| Q |
201 |
caaggtgg |
208 |
Q |
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|||||||| |
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| T |
40617046 |
caaggtgg |
40617053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 40627646 - 40627764
Alignment:
| Q |
89 |
tacttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccaca |
188 |
Q |
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| T |
40627646 |
tacttgagtaattttt-aagccatagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccaca |
40627744 |
T |
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| Q |
189 |
atattgttacgacaaggtgg |
208 |
Q |
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| T |
40627745 |
atattgttatgacaaggtgg |
40627764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 40610453 - 40610558
Alignment:
| Q |
103 |
ttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgaca |
202 |
Q |
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| T |
40610453 |
ttcaagctatagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgaca |
40610552 |
T |
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| Q |
203 |
aggtgg |
208 |
Q |
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|||||| |
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| T |
40610553 |
aggtgg |
40610558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 40610364 - 40610406
Alignment:
| Q |
28 |
caagcttaattttaccttatgcaaattaagcttagtcttatta |
70 |
Q |
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| T |
40610364 |
caagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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