View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5232_low_33 (Length: 214)

Name: NF5232_low_33
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5232_low_33
NF5232_low_33
[»] chr8 (30 HSPs)
chr8 (120-214)||(4638829-4638923)
chr8 (38-120)||(4631559-4631641)
chr8 (38-71)||(16998996-16999029)
chr8 (38-74)||(13153925-13153961)
chr8 (38-74)||(28572043-28572079)
chr8 (38-74)||(28579636-28579672)
chr8 (38-74)||(34568487-34568523)
chr8 (38-73)||(44250857-44250892)
chr8 (38-72)||(8251937-8251971)
chr8 (38-72)||(17856780-17856814)
chr8 (38-72)||(18754143-18754177)
chr8 (38-72)||(26016568-26016602)
chr8 (38-72)||(29279460-29279494)
chr8 (38-72)||(32675761-32675795)
chr8 (38-72)||(38781145-38781179)
chr8 (38-72)||(40530410-40530444)
chr8 (38-71)||(51099-51132)
chr8 (38-71)||(1774342-1774375)
chr8 (38-71)||(2944276-2944309)
chr8 (38-71)||(8951432-8951465)
chr8 (38-71)||(11798869-11798902)
chr8 (38-71)||(13154192-13154225)
chr8 (38-71)||(17856517-17856550)
chr8 (38-75)||(26016832-26016869)
chr8 (38-71)||(28192179-28192212)
chr8 (38-71)||(39029178-39029211)
chr8 (38-71)||(42885054-42885087)
chr8 (38-71)||(43653943-43653976)
chr8 (39-71)||(18455720-18455752)
chr8 (38-74)||(23688169-23688205)
[»] chr1 (36 HSPs)
chr1 (129-194)||(48512536-48512601)
chr1 (74-130)||(48512636-48512692)
chr1 (38-74)||(9202242-9202278)
chr1 (38-74)||(11741394-11741430)
chr1 (38-74)||(37951953-37951989)
chr1 (38-74)||(39497430-39497466)
chr1 (38-76)||(943641-943679)
chr1 (38-76)||(1039385-1039423)
chr1 (38-76)||(1046291-1046329)
chr1 (38-72)||(1047991-1048025)
chr1 (38-72)||(4102718-4102752)
chr1 (38-72)||(38920238-38920272)
chr1 (38-72)||(39362933-39362967)
chr1 (38-72)||(39750120-39750154)
chr1 (38-72)||(45039411-45039445)
chr1 (38-72)||(52431178-52431212)
chr1 (38-71)||(15811236-15811269)
chr1 (38-71)||(23541979-23542012)
chr1 (38-71)||(23542243-23542276)
chr1 (38-71)||(30290265-30290298)
chr1 (38-71)||(36694854-36694887)
chr1 (38-71)||(36710955-36710988)
chr1 (38-71)||(39363198-39363231)
chr1 (38-71)||(39497697-39497730)
chr1 (38-71)||(44646535-44646568)
chr1 (38-71)||(44649629-44649662)
chr1 (38-71)||(44649893-44649926)
chr1 (38-71)||(46075871-46075904)
chr1 (38-71)||(49907021-49907054)
chr1 (39-72)||(52601990-52602023)
chr1 (38-74)||(7763753-7763789)
chr1 (38-74)||(16576096-16576132)
chr1 (38-74)||(30289599-30289635)
chr1 (38-70)||(30289866-30289898)
chr1 (38-74)||(41855477-41855513)
chr1 (38-74)||(47069052-47069088)
[»] scaffold0604 (1 HSPs)
scaffold0604 (2-71)||(3749-3819)
[»] chr3 (40 HSPs)
chr3 (38-76)||(37728708-37728746)
chr3 (38-74)||(7181347-7181383)
chr3 (38-74)||(20862461-20862497)
chr3 (38-74)||(22103933-22103969)
chr3 (38-74)||(26806112-26806148)
chr3 (38-74)||(50647681-50647717)
chr3 (38-74)||(51284066-51284102)
chr3 (38-73)||(12050396-12050431)
chr3 (38-73)||(14428873-14428908)
chr3 (38-73)||(25149126-25149161)
chr3 (38-73)||(44543780-44543815)
chr3 (38-76)||(4759355-4759393)
chr3 (38-72)||(33868712-33868746)
chr3 (38-72)||(35868087-35868121)
chr3 (38-72)||(43868102-43868136)
chr3 (38-71)||(4024052-4024085)
chr3 (38-71)||(4024315-4024348)
chr3 (38-71)||(9499501-9499534)
chr3 (38-71)||(9779979-9780012)
chr3 (38-71)||(10220933-10220966)
chr3 (38-71)||(14428610-14428643)
chr3 (38-71)||(16434977-16435010)
chr3 (38-71)||(21756486-21756519)
chr3 (38-71)||(26593769-26593802)
chr3 (38-71)||(29719714-29719747)
chr3 (38-71)||(31531415-31531448)
chr3 (38-71)||(36005768-36005801)
chr3 (38-71)||(45252773-45252806)
chr3 (38-71)||(46049990-46050023)
chr3 (38-71)||(46878443-46878476)
chr3 (38-71)||(52058985-52059018)
chr3 (38-71)||(54604592-54604625)
chr3 (38-74)||(7051724-7051760)
chr3 (38-74)||(10015793-10015829)
chr3 (38-74)||(19897840-19897876)
chr3 (38-74)||(26306611-26306647)
chr3 (38-74)||(27687983-27688019)
chr3 (38-74)||(41392884-41392920)
chr3 (39-75)||(48904268-48904304)
chr3 (38-74)||(53361859-53361895)
[»] scaffold0122 (1 HSPs)
scaffold0122 (4-72)||(12064-12133)
[»] chr7 (20 HSPs)
chr7 (38-74)||(32814430-32814466)
chr7 (38-74)||(33858870-33858906)
chr7 (38-74)||(39871617-39871653)
chr7 (38-72)||(20075111-20075145)
chr7 (38-72)||(28060981-28061015)
chr7 (38-72)||(29286041-29286075)
chr7 (38-72)||(36698135-36698169)
chr7 (38-72)||(38858297-38858331)
chr7 (38-71)||(19920563-19920596)
chr7 (38-71)||(21295151-21295184)
chr7 (38-71)||(26255096-26255129)
chr7 (38-71)||(32872379-32872412)
chr7 (38-71)||(38428411-38428444)
chr7 (38-71)||(39197718-39197751)
chr7 (38-71)||(40300230-40300263)
chr7 (38-71)||(41003158-41003191)
chr7 (38-71)||(41026100-41026133)
chr7 (38-71)||(41252365-41252398)
chr7 (38-71)||(48521029-48521062)
chr7 (38-74)||(34012521-34012557)
[»] chr6 (15 HSPs)
chr6 (4-71)||(8743188-8743256)
chr6 (39-74)||(12144043-12144078)
chr6 (38-72)||(4844399-4844433)
chr6 (38-72)||(30248646-30248680)
chr6 (38-72)||(34741730-34741764)
chr6 (38-71)||(231109-231142)
chr6 (38-71)||(9038642-9038675)
chr6 (38-71)||(9388529-9388562)
chr6 (38-71)||(11847836-11847869)
chr6 (38-71)||(13648133-13648166)
chr6 (38-75)||(19097805-19097842)
chr6 (38-71)||(23398143-23398176)
chr6 (38-71)||(34301836-34301869)
chr6 (38-74)||(13321330-13321366)
chr6 (38-74)||(25045647-25045683)
[»] chr5 (19 HSPs)
chr5 (4-71)||(7951562-7951630)
chr5 (38-73)||(9020692-9020727)
chr5 (38-73)||(16127257-16127292)
chr5 (38-72)||(186362-186396)
chr5 (38-72)||(6673232-6673266)
chr5 (38-76)||(9828388-9828426)
chr5 (38-72)||(14913647-14913681)
chr5 (38-72)||(22527691-22527725)
chr5 (38-72)||(26894877-26894911)
chr5 (38-72)||(34662203-34662237)
chr5 (38-72)||(40004413-40004447)
chr5 (38-71)||(1265949-1265982)
chr5 (38-71)||(9828657-9828690)
chr5 (38-71)||(10734527-10734560)
chr5 (39-72)||(16440930-16440963)
chr5 (38-71)||(41687116-41687149)
chr5 (38-74)||(3497537-3497573)
chr5 (38-74)||(16153259-16153295)
chr5 (38-74)||(41383909-41383945)
[»] scaffold0008 (1 HSPs)
scaffold0008 (38-73)||(259126-259161)
[»] chr4 (25 HSPs)
chr4 (38-73)||(20747434-20747469)
chr4 (38-73)||(36391852-36391887)
chr4 (38-73)||(45742810-45742845)
chr4 (38-72)||(4035824-4035858)
chr4 (38-71)||(4036089-4036122)
chr4 (38-71)||(4549629-4549662)
chr4 (38-71)||(5375561-5375594)
chr4 (38-71)||(5743663-5743696)
chr4 (38-71)||(9328244-9328277)
chr4 (38-71)||(20391441-20391474)
chr4 (38-71)||(26626006-26626039)
chr4 (38-71)||(29014064-29014097)
chr4 (38-71)||(30771528-30771561)
chr4 (38-71)||(32032997-32033030)
chr4 (38-71)||(33413518-33413551)
chr4 (38-71)||(34273223-34273256)
chr4 (38-71)||(35675924-35675957)
chr4 (38-71)||(44294789-44294822)
chr4 (38-71)||(47806860-47806893)
chr4 (38-71)||(52977982-52978015)
chr4 (38-71)||(55631999-55632032)
chr4 (38-74)||(17610024-17610060)
chr4 (38-74)||(52181190-52181226)
chr4 (38-74)||(52870641-52870677)
chr4 (39-71)||(53277190-53277222)
[»] chr2 (25 HSPs)
chr2 (38-73)||(11201681-11201716)
chr2 (38-73)||(34883852-34883887)
chr2 (38-72)||(8841661-8841695)
chr2 (38-72)||(16108214-16108248)
chr2 (38-72)||(20252209-20252243)
chr2 (39-73)||(22182929-22182963)
chr2 (38-72)||(34062669-34062703)
chr2 (38-72)||(39833738-39833772)
chr2 (38-72)||(40607701-40607735)
chr2 (38-72)||(41450515-41450549)
chr2 (38-71)||(2438225-2438258)
chr2 (38-71)||(2438489-2438522)
chr2 (38-71)||(7491844-7491877)
chr2 (38-71)||(7492108-7492141)
chr2 (38-71)||(8716896-8716929)
chr2 (38-71)||(17408298-17408331)
chr2 (38-71)||(22897655-22897688)
chr2 (38-71)||(23788969-23789002)
chr2 (38-71)||(27560206-27560239)
chr2 (38-71)||(34113790-34113823)
chr2 (38-71)||(36131032-36131065)
chr2 (38-71)||(45474351-45474384)
chr2 (38-74)||(5664635-5664671)
chr2 (39-75)||(8841393-8841429)
chr2 (38-74)||(15228153-15228189)
[»] scaffold0029 (1 HSPs)
scaffold0029 (38-72)||(51686-51720)
[»] scaffold0012 (1 HSPs)
scaffold0012 (38-72)||(47639-47673)
[»] scaffold0002 (1 HSPs)
scaffold0002 (38-72)||(355335-355369)
[»] scaffold0308 (1 HSPs)
scaffold0308 (38-71)||(14352-14385)
[»] scaffold0237 (1 HSPs)
scaffold0237 (2-74)||(6576-6649)
[»] scaffold0025 (1 HSPs)
scaffold0025 (38-71)||(65378-65411)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 4638829 - 4638923
Alignment:
Q  120 atgaagaatattttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcacgtaaccagtagcctcgtgaagcac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4638829 atgaagaatattttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcatgtaaccagtagcctcgtgaagcac 4638923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 4631559 - 4631641
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattactgatttgaccatcctttgaccataaataacattatcatagaataa 120  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4631559 caaaatggtcttataattagggacggatggagtattactgatttgatcatcctttgaccataaataacattatcatagaataa 4631641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 16999029 - 16998996
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||||||||||||||||    
T  16999029 caaaagggtcttataattatggacggagggagta 16998996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 13153961 - 13153925
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  13153961 caaaagggtcttataattagggacggagggagtatta 13153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 28572079 - 28572043
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28572079 caaaagggtcttataattagggacggagggagtatta 28572043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 28579672 - 28579636
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28579672 caaaagggtcttataattagggacggagggagtatta 28579636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 34568523 - 34568487
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34568523 caaaagggtcttataattagggacggagggagtatta 34568487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 44250892 - 44250857
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44250892 caaaagggtcttataattagggacggagggagtatt 44250857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 8251937 - 8251971
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  8251937 caaaagggtcttataattagggacggagggagtat 8251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 17856780 - 17856814
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  17856780 caaaagggtcttataattagggacggagggagtat 17856814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 18754177 - 18754143
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  18754177 caaaagggtcttataattagggacggagggagtat 18754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 26016602 - 26016568
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  26016602 caaaagggtcttataattagggacggagggagtat 26016568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 29279460 - 29279494
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  29279460 caaaagggtcttataattagggacggagggagtat 29279494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 32675761 - 32675795
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  32675761 caaaagggtcttataattagggacggagggagtat 32675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 38781145 - 38781179
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||||||||||||| |||||    
T  38781145 caaaagggtcttataattatggacggaggtagtat 38781179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 40530410 - 40530444
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  40530410 caaaagggtcttataattagggacggagggagtat 40530444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 51099 - 51132
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  51099 caaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 1774375 - 1774342
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  1774375 caaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 2944276 - 2944309
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  2944276 caaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 8951432 - 8951465
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  8951432 caaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 11798869 - 11798902
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  11798869 caaaagggtcttataattagggacggagggagta 11798902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 13154192 - 13154225
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  13154192 caaaagggtcttataattagggacggagggagta 13154225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 17856550 - 17856517
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  17856550 caaaagggtcttataattaaggacggagggagta 17856517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 26016832 - 26016869
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattac 75  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  26016832 caaaagggtcctataattagggacggagggagtattac 26016869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 28192179 - 28192212
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  28192179 caaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 39029211 - 39029178
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  39029211 caaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 42885087 - 42885054
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  42885087 caaaagggtcttataattagggacggagggagta 42885054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 43653976 - 43653943
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  43653976 caaaagggtcttataattagggacggagggagta 43653943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 18455752 - 18455720
Alignment:
Q  39 aaaagggtcttataattatggacggagggagta 71  Q
    |||||||||||||||||| ||||||||||||||    
T  18455752 aaaagggtcttataattagggacggagggagta 18455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 23688169 - 23688205
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  23688169 caaaagggtcttataattagggacggaggtagtatta 23688205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 48512601 - 48512536
Alignment:
Q  129 attttgaaattgaacttgtcaaggttgcaggcatggagagcacagaacctgaacttgatcacgtaa 194  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  48512601 attttgaaattgaacttgtgaaggttgcaagtatggagagcacagaacctgaacttgatcatgtaa 48512536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 48512692 - 48512636
Alignment:
Q  74 actgatttgaccatcctttgaccataaataacattatcatagaataatgaagaatat 130  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||    
T  48512692 actgatttgaccatccattgaccataaataacattaacatagaattacgaagaatat 48512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 9202278 - 9202242
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  9202278 caaaagggtcttataattagggacggagggagtatta 9202242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 11741430 - 11741394
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  11741430 caaaagggtcttataattagggacggagggagtatta 11741394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 37951953 - 37951989
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37951953 caaaagggtcttataattagggacggagggagtatta 37951989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 39497466 - 39497430
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39497466 caaaagggtcttataattagggacggagggagtatta 39497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 943641 - 943679
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  943641 caaaagggtcttataattagggacggagggagtaatact 943679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 1039385 - 1039423
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  1039385 caaaagggtcttataattagggacggagggagtactact 1039423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 1046291 - 1046329
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  1046291 caaaagggtcttataattagggacggagggagtactact 1046329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 1048025 - 1047991
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  1048025 caaaagggtcttataattagggacggagggagtat 1047991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 4102718 - 4102752
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  4102718 caaaagggtcttataattagggacggagggagtat 4102752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 38920272 - 38920238
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  38920272 caaaagggtcttataattagggacggagggagtat 38920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 39362967 - 39362933
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  39362967 caaaagggtcttataattagggacggagggagtat 39362933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 39750154 - 39750120
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  39750154 caaaagggtcttataattagggacggagggagtat 39750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 45039445 - 45039411
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  45039445 caaaagggtcttataattagggacggagggagtat 45039411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 52431178 - 52431212
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  52431178 caaaagggtcttataattagggacggagggagtat 52431212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 15811236 - 15811269
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  15811236 caaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 23542012 - 23541979
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  23542012 caaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 23542243 - 23542276
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  23542243 caaaagggtcttataattagggacggagggagta 23542276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 30290298 - 30290265
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  30290298 caaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 36694887 - 36694854
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  36694887 caaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 36710988 - 36710955
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  36710988 caaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 39363198 - 39363231
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  39363198 caaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 39497697 - 39497730
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  39497697 caaaagggtcttataattagggacggagggagta 39497730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 44646535 - 44646568
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  44646535 caaaagggtcttataattagggacggagggagta 44646568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 44649662 - 44649629
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  44649662 caaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 44649893 - 44649926
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  44649893 caaaagggtcttataattagggacggagggagta 44649926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 46075871 - 46075904
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  46075871 caaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 49907054 - 49907021
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  49907054 caaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 52602023 - 52601990
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtat 72  Q
    |||||||||||||||||| |||||||||||||||    
T  52602023 aaaagggtcttataattagggacggagggagtat 52601990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 7763753 - 7763789
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  7763753 caaaagggtcttataattagggacggaggtagtatta 7763789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 16576096 - 16576132
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    |||||| |||||||||||| |||||||||||||||||    
T  16576096 caaaagagtcttataattagggacggagggagtatta 16576132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 30289635 - 30289599
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    |||||| |||||||||||| |||||||||||||||||    
T  30289635 caaaagagtcttataattagggacggagggagtatta 30289599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 30289866 - 30289898
Alignment:
Q  38 caaaagggtcttataattatggacggagggagt 70  Q
    ||||||||||||||||||| |||||||||||||    
T  30289866 caaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 41855477 - 41855513
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  41855477 caaaagggtcttataattagggacggatggagtatta 41855513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 47069052 - 47069088
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  47069052 caaaagggtcttataattagggacggatggagtatta 47069088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 3749 - 3819
Alignment:
Q  2 agcaaaggggtcttataaaaagg-acaaannnnnnnncaaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||||| |||||        ||||||||||||||||||| ||||||||||||||    
T  3749 agcaaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 37728746 - 37728708
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37728746 caaaagggtcttataattagggacggagggagtattact 37728708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 7181383 - 7181347
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7181383 caaaagggtcttataattagggacggagggagtatta 7181347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 20862461 - 20862497
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20862461 caaaagggtcttataattagggacggagggagtatta 20862497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 22103933 - 22103969
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22103933 caaaagggtcttataattagggacggagggagtatta 22103969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 26806148 - 26806112
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26806148 caaaagggtcttataattagggacggagggagtatta 26806112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 50647717 - 50647681
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50647717 caaaagggtcttataattagggacggagggagtatta 50647681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 51284066 - 51284102
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  51284066 caaaagggtcttataattagggacggagggagtatta 51284102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 12050396 - 12050431
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12050396 caaaagggtcttataattagggacggagggagtatt 12050431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 14428873 - 14428908
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14428873 caaaagggtcttataattagggacggagggagtatt 14428908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 25149126 - 25149161
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25149126 caaaagggtcttataattagggacggagggagtatt 25149161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 44543815 - 44543780
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44543815 caaaagggtcttataattagggacggagggagtatt 44543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 4759355 - 4759393
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  4759355 caaaagggtcttataattagggacggaggtagtattact 4759393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 33868712 - 33868746
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  33868712 caaaagggtcttataattagggacggagggagtat 33868746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 35868087 - 35868121
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  35868087 caaaagggtcttataattagggacggagggagtat 35868121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 43868136 - 43868102
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  43868136 caaaagggtcttataattagggacggagggagtat 43868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 4024085 - 4024052
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  4024085 caaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 4024315 - 4024348
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  4024315 caaaagggtcttataattagggacggagggagta 4024348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 9499501 - 9499534
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9499501 caaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 9780012 - 9779979
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9780012 caaaagggtcttataattagggacggagggagta 9779979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 10220966 - 10220933
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  10220966 caaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 14428643 - 14428610
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  14428643 caaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 16435010 - 16434977
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  16435010 caaaagggtcttataattagggacggagggagta 16434977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 21756519 - 21756486
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  21756519 caaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 26593769 - 26593802
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  26593769 caaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 29719714 - 29719747
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||||||||||| ||||    
T  29719714 caaaagggtcttataattatggacggaggtagta 29719747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 31531415 - 31531448
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  31531415 caaaagggtcttataattagggacggagggagta 31531448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 36005768 - 36005801
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  36005768 caaaagggtcttataattagggacggagggagta 36005801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 45252806 - 45252773
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  45252806 caaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 46049990 - 46050023
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  46049990 caaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 46878443 - 46878476
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  46878443 caaaagggtcttataattaaggacggagggagta 46878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 52059018 - 52058985
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  52059018 caaaagggtcttataattagggacggagggagta 52058985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 54604592 - 54604625
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  54604592 caaaagggtcttataattaaggacggagggagta 54604625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 7051724 - 7051760
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  7051724 caaaaggatcttataattagggacggagggagtatta 7051760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 10015793 - 10015829
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  10015793 caaaagggtcttataattagggacggaggtagtatta 10015829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 19897840 - 19897876
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  19897840 caaaagggtcttataattagggacggaggtagtatta 19897876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 26306611 - 26306647
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26306611 caaaagggtcttataattaggaacggagggagtatta 26306647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 27688019 - 27687983
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  27688019 caaaagggtcttataattaaggacggaggtagtatta 27687983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 41392884 - 41392920
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  41392884 caaaagggtcttataattagggacggaggtagtatta 41392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 48904268 - 48904304
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtattac 75  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48904268 aaaagggtcttataattagggacggaggtagtattac 48904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 53361859 - 53361895
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  53361859 caaaatggtcttataattagggacggagggagtatta 53361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 12133 - 12064
Alignment:
Q  4 caaaggggtcttataaaaagg-acaaannnnnnnncaaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||||| |||||        ||||||||||||||||||| |||||||||||||||    
T  12133 caaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggagggagtat 12064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 32814466 - 32814430
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32814466 caaaagggtcttataattagggacggagggagtatta 32814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 33858870 - 33858906
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33858870 caaaagggtcttataattagggacggagggagtatta 33858906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 39871617 - 39871653
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39871617 caaaagggtcttataattagggacggagggagtatta 39871653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 20075111 - 20075145
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  20075111 caaaagggtcttataattagggacggagggagtat 20075145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 28060981 - 28061015
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  28060981 caaaagggtcttataattagggacggagggagtat 28061015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 29286041 - 29286075
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  29286041 caaaagggtcttataattagggacggagggagtat 29286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 36698135 - 36698169
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  36698135 caaaagggtcttataattagggacggagggagtat 36698169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 38858331 - 38858297
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  38858331 caaaagggtcttataattagggacggagggagtat 38858297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 19920596 - 19920563
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  19920596 caaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 21295184 - 21295151
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  21295184 caaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 26255129 - 26255096
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  26255129 caaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 32872379 - 32872412
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  32872379 caaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 38428411 - 38428444
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  38428411 caaaagggtcttataattagggacggagggagta 38428444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 39197751 - 39197718
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  39197751 caaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 40300263 - 40300230
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  40300263 caaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 41003158 - 41003191
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  41003158 caaaagggtcttataattaaggacggagggagta 41003191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 41026100 - 41026133
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  41026100 caaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 41252365 - 41252398
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  41252365 caaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 48521062 - 48521029
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  48521062 caaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 34012521 - 34012557
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  34012521 caaaagggtcttataattagggacggaggtagtatta 34012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 8743256 - 8743188
Alignment:
Q  4 caaaggggtcttataaaaagg-acaaannnnnnnncaaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||| |||||        ||||||||||||||||||| ||||||||||||||    
T  8743256 caaaggggtcttataaaaagggacaaaaaaattctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 12144043 - 12144078
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtatta 74  Q
    |||||||||||||||||| |||||||||||||||||    
T  12144043 aaaagggtcttataattagggacggagggagtatta 12144078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 4844433 - 4844399
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  4844433 caaaagggtcttataattagggacggagggagtat 4844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 30248680 - 30248646
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  30248680 caaaagggtcttataattagggacggagggagtat 30248646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 34741730 - 34741764
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  34741730 caaaagggtcttataattagggacggagggagtat 34741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 231109 - 231142
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  231109 caaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 9038675 - 9038642
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9038675 caaaagggtcttataattagggacggagggagta 9038642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 9388562 - 9388529
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9388562 caaaagggtcttataattagggacggagggagta 9388529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 11847836 - 11847869
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  11847836 caaaagggtcttataattagggacggagggagta 11847869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 13648133 - 13648166
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  13648133 caaaagggtcttataattaaggacggagggagta 13648166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 19097805 - 19097842
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattac 75  Q
    |||||||||||||||||||  |||||||||||||||||    
T  19097805 caaaagggtcttataattagagacggagggagtattac 19097842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 23398143 - 23398176
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  23398143 caaaagggtcttataattagggacggagggagta 23398176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 34301836 - 34301869
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  34301836 caaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 13321330 - 13321366
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13321330 caaaagggtcttataattagggacggaggtagtatta 13321366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 25045647 - 25045683
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25045647 caaaagggtcttataattagggacggaggtagtatta 25045683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 7951630 - 7951562
Alignment:
Q  4 caaaggggtcttataaaaagg-acaaannnnnnnncaaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||| |||||        ||||||||||||||||||| ||||||||||||||    
T  7951630 caaaggggtcttataaaaagggacaaaaaaaatctcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 9020727 - 9020692
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9020727 caaaagggtcttataattagggacggagggagtatt 9020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 16127292 - 16127257
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16127292 caaaagggtcttataattagggacggagggagtatt 16127257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 186362 - 186396
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  186362 caaaagggtcttataattagggacggagggagtat 186396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 6673232 - 6673266
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  6673232 caaaagggtcttataattagggacggagggagtat 6673266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 9828426 - 9828388
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtattact 76  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  9828426 caaaagggtcttataattagggacggagggagtactact 9828388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 14913681 - 14913647
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  14913681 caaaagggtcttataattagggacggagggagtat 14913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 22527725 - 22527691
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  22527725 caaaagggtcttataattagggacggagggagtat 22527691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 26894877 - 26894911
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  26894877 caaaagggtcttataattagggacggagggagtat 26894911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 34662237 - 34662203
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  34662237 caaaagggtcttataattagggacggagggagtat 34662203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 40004413 - 40004447
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  40004413 caaaagggtcttataattagggacggagggagtat 40004447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 1265982 - 1265949
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  1265982 caaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 9828657 - 9828690
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9828657 caaaagggtcttataattagggacggagggagta 9828690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 10734527 - 10734560
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  10734527 caaaagggtcttataattagggacggagggagta 10734560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 16440963 - 16440930
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtat 72  Q
    |||||||||||||||||| |||||||||||||||    
T  16440963 aaaagggtcttataattagggacggagggagtat 16440930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 41687116 - 41687149
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||||||||||||| ||||    
T  41687116 caaaagggtcttataattatggacggaggtagta 41687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 3497573 - 3497537
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  3497573 caaaagggtcttataattagggacggatggagtatta 3497537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 16153259 - 16153295
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  16153259 caaaagggtcttataattagggacggatggagtatta 16153295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 41383945 - 41383909
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  41383945 caaaaggatcttataattagggacggagggagtatta 41383909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 259126 - 259161
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  259126 caaaagggtcttataattagggacggagggagtatt 259161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 20747434 - 20747469
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20747434 caaaagggtcttataattagggacggagggagtatt 20747469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 36391887 - 36391852
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36391887 caaaagggtcttataattaaggacggagggagtatt 36391852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 45742810 - 45742845
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45742810 caaaagggtcttataattagggacggagggagtatt 45742845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 4035858 - 4035824
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  4035858 caaaagggtcttataattagggacggagggagtat 4035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 4036089 - 4036122
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  4036089 caaaagggtcttataattagggacggagggagta 4036122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 4549662 - 4549629
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  4549662 caaaagggtcttataattagggacggagggagta 4549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 5375561 - 5375594
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  5375561 caaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 5743663 - 5743696
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  5743663 caaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 9328244 - 9328277
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  9328244 caaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 20391441 - 20391474
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  20391441 caaaagggtcttataattagggacggagggagta 20391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 26626006 - 26626039
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  26626006 caaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 29014097 - 29014064
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  29014097 caaaagggtcttataattagggacggagggagta 29014064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 30771561 - 30771528
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  30771561 caaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 32032997 - 32033030
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  32032997 caaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 33413551 - 33413518
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  33413551 caaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 34273223 - 34273256
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  34273223 caaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 35675924 - 35675957
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  35675924 caaaagggtcttataattagggacggagggagta 35675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 44294822 - 44294789
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  44294822 caaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 47806893 - 47806860
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  47806893 caaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 52978015 - 52977982
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  52978015 caaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 55632032 - 55631999
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  55632032 caaaagggtcttataattagggacggagggagta 55631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 17610024 - 17610060
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  17610024 caaaaggatcttataattagggacggagggagtatta 17610060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 52181190 - 52181226
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  52181190 caaaatggtcttataattatggacggaggtagtatta 52181226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 52870677 - 52870641
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    |||||||||||||||||||  ||||||||||||||||    
T  52870677 caaaagggtcttataattagagacggagggagtatta 52870641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 53277190 - 53277222
Alignment:
Q  39 aaaagggtcttataattatggacggagggagta 71  Q
    |||||||||||||||||| ||||||||||||||    
T  53277190 aaaagggtcttataattagggacggagggagta 53277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 11201716 - 11201681
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11201716 caaaagggtcttataattagggacggagggagtatt 11201681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 34883852 - 34883887
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatt 73  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34883852 caaaagggtcttataattagggacggagggagtatt 34883887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 8841661 - 8841695
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  8841661 caaaagggtcttataattaaggacggagggagtat 8841695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 16108248 - 16108214
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  16108248 caaaagggtcttataattagggacggagggagtat 16108214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 20252243 - 20252209
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  20252243 caaaagggtcttataattagggacggagggagtat 20252209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 22182929 - 22182963
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtatt 73  Q
    |||||||||||||||||| ||||||||||||||||    
T  22182929 aaaagggtcttataattagggacggagggagtatt 22182963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 34062669 - 34062703
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  34062669 caaaagggtcttataattagggacggagggagtat 34062703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 39833772 - 39833738
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  39833772 caaaagggtcttataattagggacggagggagtat 39833738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 40607735 - 40607701
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  40607735 caaaagggtcttataattagggacggagggagtat 40607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 41450549 - 41450515
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  41450549 caaaagggtcttataattagggacggagggagtat 41450515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 2438258 - 2438225
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  2438258 caaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 2438489 - 2438522
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  2438489 caaaagggtcttataattagggacggagggagta 2438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 7491877 - 7491844
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  7491877 caaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 7492108 - 7492141
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  7492108 caaaagggtcttataattagggacggagggagta 7492141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 8716896 - 8716929
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  8716896 caaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 17408298 - 17408331
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  17408298 caaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 22897655 - 22897688
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  22897655 caaaagggtcttataattagggacggagggagta 22897688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 23789002 - 23788969
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  23789002 caaaagggtcttataattaaggacggagggagta 23788969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 27560239 - 27560206
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  27560239 caaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 34113790 - 34113823
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  34113790 caaaagggtcttataattagggacggagggagta 34113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 36131032 - 36131065
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  36131032 caaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 45474384 - 45474351
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  45474384 caaaagggtcttataattagggacggagggagta 45474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 5664671 - 5664635
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  5664671 caaaaaggtcttataattagggacggagggagtatta 5664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 8841429 - 8841393
Alignment:
Q  39 aaaagggtcttataattatggacggagggagtattac 75  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  8841429 aaaagagtcttataattagggacggagggagtattac 8841393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 15228153 - 15228189
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  15228153 caaaaggatcttataattagggacggagggagtatta 15228189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 51686 - 51720
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  51686 caaaagggtcttataattagggacggagggagtat 51720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 47673 - 47639
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  47673 caaaagggtcttataattagggacggagggagtat 47639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 355335 - 355369
Alignment:
Q  38 caaaagggtcttataattatggacggagggagtat 72  Q
    ||||||||||||||||||| |||||||||||||||    
T  355335 caaaagggtcttataattagggacggagggagtat 355369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 14352 - 14385
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  14352 caaaagggtcttataattaaggacggagggagta 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 6576 - 6649
Alignment:
Q  2 agcaaaggggtcttataaaaagg-acaaannnnnnnncaaaagggtcttataattatggacggagggagtatta 74  Q
    ||||||||||||||||||||||| ||||         ||||||||||||||||||| ||||||||| |||||||    
T  6576 agcaaaggggtcttataaaaagggacaattttttttccaaaagggtcttataattagggacggaggtagtatta 6649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 65411 - 65378
Alignment:
Q  38 caaaagggtcttataattatggacggagggagta 71  Q
    ||||||||||||||||||| ||||||||||||||    
T  65411 caaaagggtcttataattagggacggagggagta 65378  T

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