View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5232_low_34 (Length: 205)
Name: NF5232_low_34
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_34 |
 | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 537691 - 537814
Alignment:
| Q |
11 |
tgaaatgaaggtggaaagaaatgagttgcaactaacct----tatgaaaataattatgggtatacattaggaattgagggaggtaagctagccaaatcaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
537691 |
tgaaatgaaggtggaaagaaatgagttgcaactaacctctgttatgaaaataattatgggtatacattaggaattgggggatgtaagctagcaaaatcaa |
537790 |
T |
|
| Q |
107 |
aaaactattagaaaacttatttca |
130 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
537791 |
aaaacgattagaaaacttatttca |
537814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 36220449 - 36220527
Alignment:
| Q |
51 |
tgaaaataattatgggtatacattaggaattgagggaggtaagctagccaaatcaaaaaactattagaaaacttatttc |
129 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||| |||| |||||||||||| |
|
|
| T |
36220449 |
tgaaaataattacatgtatacattaggatttgggggaggtaagctagcaaaataaaaaaaggattaaaaaacttatttc |
36220527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 3138206 - 3138143
Alignment:
| Q |
66 |
gtatacattaggaattgagggaggtaagctagccaaatcaaaaaactattagaaaacttatttca |
130 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||| |||||||| |
|
|
| T |
3138206 |
gtatacattaggaattg-gggaggtaagctagcaaaataaaaaaaggattaaaaaatttatttca |
3138143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 4519 - 4565
Alignment:
| Q |
140 |
ttatttcttcttaaaccggatggaaccgccacccgtcttgggaattg |
186 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
4519 |
ttattttttcttaaacctgatggaaccgccacctgtcctgggaattg |
4565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 29858317 - 29858363
Alignment:
| Q |
140 |
ttatttcttcttaaaccggatggaaccgccacccgtcttgggaattg |
186 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
29858317 |
ttattttttcttaaacctgatggaaccgccacctgtcctgggaattg |
29858363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University