View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_4 (Length: 397)
Name: NF5232_low_4
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 5269152 - 5269525
Alignment:
| Q |
11 |
aatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269152 |
aatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaa |
5269251 |
T |
|
| Q |
111 |
tcagattatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttct |
210 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5269252 |
tcagcttatgctttggggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttct |
5269351 |
T |
|
| Q |
211 |
ctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgcactctttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269352 |
ctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgcactctttg |
5269451 |
T |
|
| Q |
311 |
tcccccaaacatgtgcaaggtataatatagaagttattctctcttt---gtatttagtttcaaatatatgatta |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5269452 |
tcccccaaacatgtgcaaggtataatatagaagttattctctctttgtagtatttagtttcaaatatatgatta |
5269525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 334
Target Start/End: Original strand, 5249933 - 5250255
Alignment:
| Q |
12 |
atgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaat |
111 |
Q |
| |
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|||||||||||| ||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
5249933 |
atgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaataatacctgctattaaat |
5250032 |
T |
|
| Q |
112 |
cagattatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctc |
211 |
Q |
| |
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||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||| ||||||| |||| | |
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| T |
5250033 |
cagcacatgcattagggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcac |
5250132 |
T |
|
| Q |
212 |
tgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgcactctttgt |
311 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |||||||||||| | || | ||||| ||||| ||||| || | ||| |||||||||| ||| ||| |
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| T |
5250133 |
tgagattaacactaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgcattctctgt |
5250232 |
T |
|
| Q |
312 |
cccccaaacatgtgcaaggtata |
334 |
Q |
| |
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|| ||||| |||||||||||||| |
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|
| T |
5250233 |
cctccaaatatgtgcaaggtata |
5250255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 5276608 - 5276282
Alignment:
| Q |
11 |
aatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaa |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||| |||||||||||||| |||| |||||| |
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|
| T |
5276608 |
aatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaa |
5276509 |
T |
|
| Q |
111 |
tcagattatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttct |
210 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| |||||||||| | ||| |||||| || ||||||||| |||| ||||| ||||||| |||| |
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|
| T |
5276508 |
tcagctcatgctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttca |
5276409 |
T |
|
| Q |
211 |
ctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttg---cactct |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | | | || ||||| ||||| ||||| || ||||| |||||||| || | | |
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| T |
5276408 |
ctgagattaacactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgt |
5276309 |
T |
|
| Q |
308 |
ttgtcccccaaacatgtgcaaggtata |
334 |
Q |
| |
|
||| || |||||||||||||||||||| |
|
|
| T |
5276308 |
ttgccctccaaacatgtgcaaggtata |
5276282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 5272629 - 5272303
Alignment:
| Q |
11 |
aatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaa |
110 |
Q |
| |
|
|||||||||||| ||||||||||||| || || ||||| |||||||| |||||||||||||| |||||| |||||||||||||| |||| |||||| |
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|
| T |
5272629 |
aatgatgatggaatttcattcaaatggtgtaaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaataatacctgcaattaaa |
5272530 |
T |
|
| Q |
111 |
tcagattatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttct |
210 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| |||||||||| | ||| |||||| || ||||||||| |||||||||||||||||||||||| |
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|
| T |
5272529 |
tcagctcatgctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttct |
5272430 |
T |
|
| Q |
211 |
ctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttg---cactct |
307 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||||||||||| | | | || ||||| ||||| ||||| || ||||| |||||||| || | | |
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| T |
5272429 |
cagagattaactctaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgt |
5272330 |
T |
|
| Q |
308 |
ttgtcccccaaacatgtgcaaggtata |
334 |
Q |
| |
|
||| || |||||||||||||||||||| |
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|
| T |
5272329 |
ttgccctccaaacatgtgcaaggtata |
5272303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 100 - 326
Target Start/End: Original strand, 14944399 - 14944624
Alignment:
| Q |
100 |
ctgctattaaatcagattatgctttagggtgtgatttgagg-attgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaatta |
198 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||| |||||||| ||| | ||| |||||| || ||||||||| |||||||||| | |
|
|
| T |
14944399 |
ctgcaattaaatcagcacatgctttagggtgtgatttgagttattgtgagcgatgccaatgtgttttacattgaaactattttgaagcatttgggaataa |
14944498 |
T |
|
| Q |
199 |
gtgaatg-cttctctgagattaacaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatg |
297 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||||||||||||| ||||||| ||| ||| | | || || | |||||||||| ||||| |||| |
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|
| T |
14944499 |
gtgaatatcttctcagagattaacactaatcttggttatgttaatgaagaaggtagactaagaatgtcaccatacc---acttcaacaaggcttcacatg |
14944595 |
T |
|
| Q |
298 |
gttgcactctttgtcccccaaacatgtgc |
326 |
Q |
| |
|
|||||||||||| || |||||||||||| |
|
|
| T |
14944596 |
gttgcactctttaccctccaaacatgtgc |
14944624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 26314884 - 26314755
Alignment:
| Q |
127 |
ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctctgagattaacaccaa |
226 |
Q |
| |
|
||||||||||||||||||| || ||||| || || |||||||||| |||||| | ||| | || |||||||| ||||| ||||| ||||||||||| || |
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|
| T |
26314884 |
ggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaa |
26314785 |
T |
|
| Q |
227 |
tcctggttatgttaatcaagaaggaagatt |
256 |
Q |
| |
|
||| ||||||||| || ||||||||||||| |
|
|
| T |
26314784 |
tccaggttatgttgatgaagaaggaagatt |
26314755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 43110420 - 43110308
Alignment:
| Q |
127 |
ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaaggatttgggaattagtgaatgcttctctgagattaacaccaa |
226 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||| |||||||||| |||||| ||||| |||| || ||||| ||||| ||||| ||||||||||| || |
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|
| T |
43110420 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaa |
43110321 |
T |
|
| Q |
227 |
tcctggttatgtt |
239 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
43110320 |
tccaggttatgtt |
43110308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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