View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_5 (Length: 392)
Name: NF5232_low_5
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 23922089 - 23922455
Alignment:
| Q |
8 |
taacataggatgaattcgtctcttaaatactcacatgaattaagttctgacaaaattcgcacaatttttgtcaannnnnnnctatcacttctaacatctt |
107 |
Q |
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| T |
23922089 |
taacataggatgaatttgtctcttaaatactcacatgaattaagttctgacaaaattcgcacaatttttgtcaatttttttctatcacttctgacatctt |
23922188 |
T |
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| Q |
108 |
ctctgttaaatcaaacatgtcttaattgaaactatcgaaaacataataatacaagtgaggagaaaattatggttttattcatgaaatgtaaatttattta |
207 |
Q |
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| T |
23922189 |
ctctgttaaatcaaacatgtcttaactgaaactattgaaaacataataatacaagtgaggagaaaattgtggttttattcatgaaatataaatttattta |
23922288 |
T |
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| Q |
208 |
tttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgagc |
307 |
Q |
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| T |
23922289 |
tttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgagc |
23922388 |
T |
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| Q |
308 |
taagctaccttcacacctttcaagtgcatcagtagcatatttgatatccaagtctatagtgtccggt |
374 |
Q |
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| T |
23922389 |
taagctatcttcacacctaccaagtgcatcactagcatatttgatatccaagtctatagtgtccggt |
23922455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 180 - 374
Target Start/End: Original strand, 23914624 - 23914818
Alignment:
| Q |
180 |
ttttattcatgaaatgtaaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatgg |
279 |
Q |
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| T |
23914624 |
ttttattcatgaaatataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatgg |
23914723 |
T |
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| Q |
280 |
cagacgtattaacattcttttcacgagctaagctaccttcacacctttcaagtgcatcagtagcatatttgatatccaagtctatagtgtccggt |
374 |
Q |
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| T |
23914724 |
cagacgtattaacattcttttcacgagctaagctatcttcacaccttccaagtgcatcactagcatatctgatatccaagtctataaggtccggt |
23914818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 351
Target Start/End: Original strand, 25802655 - 25802854
Alignment:
| Q |
152 |
aataatacaagtgaggagaaaattatggttttattcatgaaatgtaaatttatttatttatagatggcctccggctatcaatacaatatcattatataac |
251 |
Q |
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| T |
25802655 |
aataatacaagtgagatgaaaattgcaattttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagtatacaac |
25802754 |
T |
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| Q |
252 |
tgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgagctaagctaccttcacacctttcaagtgcatcagtagcatatttga |
351 |
Q |
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| T |
25802755 |
tccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttga |
25802854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 35074329 - 35074508
Alignment:
| Q |
172 |
aattatggttttattcatgaaatgtaaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgt |
271 |
Q |
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|||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||| ||| |||||||||| || |
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| T |
35074329 |
aattgtggttttattgataaaatgtaaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgc |
35074428 |
T |
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| Q |
272 |
agcaatggcagacgtattaacattcttttcacgagctaagctaccttcacacctttcaagtgcatcagtagcatatttga |
351 |
Q |
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| T |
35074429 |
aacaatggaagaagtattgacaatcttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcataattga |
35074508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 351
Target Start/End: Original strand, 35079333 - 35079477
Alignment:
| Q |
207 |
atttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgag |
306 |
Q |
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| T |
35079333 |
atttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttag |
35079432 |
T |
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| Q |
307 |
ctaagctaccttcacacctttcaagtgcatcagtagcatatttga |
351 |
Q |
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| T |
35079433 |
ccaagctacgttcacacatgtcaagtgcatcgctagcatatttga |
35079477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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