View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5232_low_6 (Length: 380)
Name: NF5232_low_6
Description: NF5232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5232_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 43129934 - 43129583
Alignment:
| Q |
13 |
tgagatgaatcaccggcggcgctgttaggaaacgccgttactttcgtgtttcgaaaccacgaaattgctgttacgaaaacgattccgtatatcattgctc |
112 |
Q |
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| T |
43129934 |
tgagctgaatcaccggcggcgctgttaggaaacgccgttactttcgtgtttcgaaaccacgaaattgctgttacgaaaacgattccgtatatcattgctc |
43129835 |
T |
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| Q |
113 |
ctttcacgttttttactaaacaatacgcgattataataaagcccaccaggcccaaccaaagtgttgggctttccattctatcacggagacaatatatatc |
212 |
Q |
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| T |
43129834 |
ctttcacgttttttactaaacaatacgcgattataataaagcccaccaggcccaaccagagtgttgggctttccattctatcacggagacaaaatatatc |
43129735 |
T |
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| Q |
213 |
accagaaaccgttccacctgggagtaaactaacggttccgttaagggcggttataaccggagctaaagaagcccgtgatgagcttgggcagccaccgagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43129734 |
accagaaaccgttccacctgggagtaaactaacggttccgttaagggcagttataaccggagctaaagaagcccgtgatgagcttgggcagccaccgagt |
43129635 |
T |
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| Q |
313 |
gtgactaaagtggatgagctatatccgacgagcccgattccttgattgtttt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43129634 |
gtgactaaagtggatgagctatatccgacgagcccgattccttgattgtttt |
43129583 |
T |
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