View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-1 (Length: 715)
Name: NF5233-Insertion-1
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 715
Target Start/End: Complemental strand, 53557700 - 53557001
Alignment:
| Q |
8 |
ctatagttatatagatgaaattaatttaattagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagacaaacagtagtatgt |
107 |
Q |
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| T |
53557700 |
ctatagttatatagatacaattaatttaattagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagacaaacagtagtatgt |
53557601 |
T |
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| Q |
108 |
tgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatg |
207 |
Q |
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| T |
53557600 |
tgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatg |
53557501 |
T |
|
| Q |
208 |
tttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtt |
307 |
Q |
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| T |
53557500 |
tttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtt |
53557401 |
T |
|
| Q |
308 |
tgcactaatccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaa |
407 |
Q |
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| T |
53557400 |
tgcactaaaccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaa |
53557301 |
T |
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| Q |
408 |
ttttcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgt |
507 |
Q |
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| T |
53557300 |
ttttcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgt |
53557201 |
T |
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| Q |
508 |
gatcaatacatacatatatataatctaagaagtactagtaattacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatccaatttc |
607 |
Q |
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| T |
53557200 |
gatcaatacataca----tataatctaagaagtactagta---acaaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatccaatttc |
53557108 |
T |
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| Q |
608 |
ctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaagggtcctttcttcacgttagccttgtcacgacatggagctc |
707 |
Q |
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| T |
53557107 |
ctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaa-ggtcctttcttcacgttagccttgtcacagcatggagctc |
53557009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 714
Target Start/End: Complemental strand, 4685489 - 4685350
Alignment:
| Q |
574 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaagggtcct |
673 |
Q |
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| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagacc-atggacct |
4685391 |
T |
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| Q |
674 |
ttcttcacgttagccttgtcacgacatggagctctacccat |
714 |
Q |
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| T |
4685390 |
ttcttcacgtttgctttgtcacaacaaggagctctacccat |
4685350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 4685783 - 4685705
Alignment:
| Q |
141 |
acctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
219 |
Q |
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| T |
4685783 |
acctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg |
4685705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 665
Target Start/End: Complemental strand, 5113295 - 5113216
Alignment:
| Q |
586 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagacca |
665 |
Q |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgacca |
5113216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
| Q |
164 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
263 |
Q |
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||||||||||| |||| |||||||||||| | || ||||||||||| ||||| ||||| | ||||||||||| ||||| | || || || ||||||| |
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| T |
5113599 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
5113500 |
T |
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| Q |
264 |
tctt |
267 |
Q |
| |
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|||| |
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| T |
5113499 |
tctt |
5113496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
| Q |
161 |
taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
219 |
Q |
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| T |
47846787 |
taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg |
47846845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 619
Target Start/End: Original strand, 40820104 - 40820141
Alignment:
| Q |
582 |
tttttgaggaagagcaatccaatttcctccagttccat |
619 |
Q |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccat |
40820141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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