View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-10 (Length: 389)
Name: NF5233-Insertion-10
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 65 - 389
Target Start/End: Complemental strand, 1911832 - 1911510
Alignment:
| Q |
65 |
taaatctatttgtttttctaatgaacattatcagccacaataatggatccatgtatagnnnnnnnnnnnnnnnaagaggagttgttatttgttaaaccca |
164 |
Q |
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| T |
1911832 |
taaatctatttgtttttctaatgaacactatcagccacaataatggatccatgtatagtttttttttt------agaggagttgttatttgttaaaccca |
1911739 |
T |
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| Q |
165 |
tattctaatgaacttgtatattatattaaatcaaaaagtctaagcatatatatgtgtcaaaatggaccatgaataagcatatgaaaatacaatgcgtcat |
264 |
Q |
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| T |
1911738 |
tattttattgaacttgtatattatattaaaccaaaaagtctaagcatatatatgtgtcaaaatgctccatgaataagcatatgaaaatacaatgcgtcat |
1911639 |
T |
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| Q |
265 |
atctaacttatacacatata----tattttttatataacttagattatagacctcacatgcaagttgtgtgacttatgagacataccaaccaagcaaaag |
360 |
Q |
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| T |
1911638 |
atctaacttatacacagatataagtattttttatataacttagattatagacctcacatgcaagttgtgtgacttatgagacataccaaccaagcaaaag |
1911539 |
T |
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| Q |
361 |
aaagattctcacttcattgttttcccccc |
389 |
Q |
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| T |
1911538 |
aaagattctcacttcattgttttcccccc |
1911510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 1911953 - 1911890
Alignment:
| Q |
10 |
aaaatcagctaaaatttctctgtactcc-aaaacgataataggtccaaaattctaataaatctat |
73 |
Q |
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| T |
1911953 |
aaaatcagctaaaatttctcagtactccaaaaacaataataaatcc-aaattctaataaatctat |
1911890 |
T |
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