View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5233-Insertion-12 (Length: 359)

Name: NF5233-Insertion-12
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5233-Insertion-12
NF5233-Insertion-12
[»] chr7 (1 HSPs)
chr7 (7-359)||(33273158-33273504)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 33273504 - 33273158
Alignment:
Q  7 atgatcgaggttttaattcccgcttctgattgtaggtacattactatcttcgatattactgagaatcgcagttaaatgtgtgtttaagcaatcatgattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  33273504 atgatcgaggttttaattcccgcttctgattgtaggtacattactatcttcgatattacagagaatcgcagttaaatgtgtgtttatgcaatcatgattg 33273405  T
Q  107 tgttgcagtcgcggagacatacaaaccttgattgcggtcacggtaatttcttttaaaaccctgcctatttgacaaaataagcaggctggaatcttggagc 206  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33273404 tgttgcagtcgcggagacatacaaaccttgattgcggt------aatttcttttaaaaccctgcctatttgacaaaataagcaggctggaatcttggagc 33273311  T
Q  207 taaaatcaaaatgattgttcacaccgcgttactcggataaacaatagaattactcttaaatttacttcatgcaagagtcaagtactatgctttatttatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33273310 taaaatcaaaatgattgttcacaccgcgttactcggataaacaatagaattactcttaaatttacttcatgcaagagtcaagtactatgctttatttatt 33273211  T
Q  307 atttttgttattaattgatnnnnnnngattgctgtatcttataagattttggt 359  Q
    |||||||||||||||| ||       ||||||| |||||||||||||||||||    
T  33273210 atttttgttattaattaattaaaaaagattgctatatcttataagattttggt 33273158  T

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