View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-14 (Length: 288)
Name: NF5233-Insertion-14
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 41337676 - 41337961
Alignment:
| Q |
8 |
gtatgaagtgtctgcagtatattcttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaag |
107 |
Q |
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| T |
41337676 |
gtatgaagtgtctacagtatattcttaagagcattgatatttttccacttttgagtgtgataaattaataaatgtaattttgatgaacaaaatctctaag |
41337775 |
T |
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| Q |
108 |
tatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgcagcta-----gatttcaag |
202 |
Q |
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| T |
41337776 |
tatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgccctgttagacctgtagctagatatgatttcaag |
41337875 |
T |
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| Q |
203 |
actaataatctatataagttagcagatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctag |
288 |
Q |
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| T |
41337876 |
actaataatctatataagttagaagatggattatttgtgttgcctctctcttcttttattatatttttcatgttttttaattctag |
41337961 |
T |
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 36136230 - 36136327
Alignment:
| Q |
78 |
aatgtaattttgatgaacaaaatctctaagtatacataactccaaattatgctaaataatatatcagtggatccaaacaattgcaaattttggatgcc |
175 |
Q |
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| T |
36136230 |
aatgtaattttgataaacaaaatctccaagcataagtaactccaaattatgctgaataatatatcagtggatccaaactattgcaaattttagatgcc |
36136327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36136130 - 36136191
Alignment:
| Q |
8 |
gtatgaagtgtctgcagtatattcttaagagcattgatatttttccacttttgagtgtgata |
69 |
Q |
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| T |
36136130 |
gtatgaagtgtctgcagtatattcttaagagcaatgatatttttccacttttgagtgtgata |
36136191 |
T |
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