View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-2 (Length: 655)
Name: NF5233-Insertion-2
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-2 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Complemental strand, 25540683 - 25540023
Alignment:
| Q |
8 |
tcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540683 |
tcaaatgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagt |
25540584 |
T |
|
| Q |
108 |
cctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540583 |
cctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcag |
25540484 |
T |
|
| Q |
208 |
tgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgttggc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540483 |
tgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgttggc |
25540384 |
T |
|
| Q |
308 |
tccttttctataatatcagtaaggattttatgcttacg-------------ataatacggttgtttgttattacatttgattttgatataacggatttgt |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540383 |
tccttttctataatatcagtaaggattttatgcttacgagttataatgtatataatacggttgtttgttattacatttgattttgatataacggatttgt |
25540284 |
T |
|
| Q |
395 |
agctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtata |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540283 |
agctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtata |
25540184 |
T |
|
| Q |
495 |
tgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggc |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25540183 |
tgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcttaacaagcttatgaatttgggc |
25540084 |
T |
|
| Q |
595 |
ttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctg |
655 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540083 |
ttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctg |
25540023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 346 - 591
Target Start/End: Original strand, 25517261 - 25517494
Alignment:
| Q |
346 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
445 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517261 |
ataatacggttgcttgttattacatttgattttgatataaaggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
25517360 |
T |
|
| Q |
446 |
gcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
545 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25517361 |
gcctatttggattgactagttttgggcgta------------tggtatatgcactttatagaggtgtttgggtgagagtatcacaagagcttatgagctc |
25517448 |
T |
|
| Q |
546 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517449 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 105 - 309
Target Start/End: Original strand, 25517048 - 25517251
Alignment:
| Q |
105 |
agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct |
204 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | ||||||||||| |
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| T |
25517048 |
agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct |
25517146 |
T |
|
| Q |
205 |
cagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgtt |
304 |
Q |
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|||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| ||||||| |
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| T |
25517147 |
cagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttttttctgatgtt |
25517246 |
T |
|
| Q |
305 |
ggctc |
309 |
Q |
| |
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||||| |
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| T |
25517247 |
ggctc |
25517251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 101 - 344
Target Start/End: Complemental strand, 25525049 - 25524812
Alignment:
| Q |
101 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
200 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | | || |||||||||||||| ||||| | |
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| T |
25525049 |
tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttta------atatgatagatggaacaggtaacat |
25524956 |
T |
|
| Q |
201 |
tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatga |
300 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||| | ||||||||||||||| ||| |
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| T |
25524955 |
tcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagttttttctga |
25524856 |
T |
|
| Q |
301 |
tgttggctccttttctataatatcagtaaggattttatgcttac |
344 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| ||| |||| |
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| T |
25524855 |
tgttggctccttttctataatatcagcaacgatttcatgtttac |
25524812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 346 - 506
Target Start/End: Complemental strand, 25524762 - 25524598
Alignment:
| Q |
346 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagca----ctctttttgtatg |
441 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||| ||||||||| |||| |||||||| |
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| T |
25524762 |
ataatacggttgcttcttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatg |
25524663 |
T |
|
| Q |
442 |
aagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
506 |
Q |
| |
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|| ||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25524662 |
aaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 25534147 - 25534070
Alignment:
| Q |
8 |
tcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
86 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||||||| |
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|
| T |
25534147 |
tcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca |
25534070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 25526145 - 25526068
Alignment:
| Q |
8 |
tcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
86 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||||||| |
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| T |
25526145 |
tcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca |
25526068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 25516266 - 25516359
Alignment:
| Q |
8 |
tcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagtt |
101 |
Q |
| |
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|||||||||||||| ||||||||||||||| || ||| ||||||| |||| ||| |||||||||||| ||||||| | ||| |||||| |||| |
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| T |
25516266 |
tcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgtatctagtt |
25516359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 25537244 - 25537194
Alignment:
| Q |
365 |
ttacatttgattttgatataacggatttgtagctagtgcagcttatgaactct |
417 |
Q |
| |
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||||||||||||||||||| | |||| |||||||||||| |||||||||||| |
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|
| T |
25537244 |
ttacatttgattttgatatgaaggat--gtagctagtgcatcttatgaactct |
25537194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 598
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
539 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
598 |
Q |
| |
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|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
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|
| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
| Q |
115 |
ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg |
159 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg |
44461024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 588
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
530 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
588 |
Q |
| |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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