View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5233-Insertion-3 (Length: 579)

Name: NF5233-Insertion-3
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5233-Insertion-3
NF5233-Insertion-3
[»] chr7 (1 HSPs)
chr7 (8-579)||(440682-441253)
[»] chr4 (8 HSPs)
chr4 (224-422)||(51220004-51220201)
chr4 (227-341)||(35250151-35250265)
chr4 (228-344)||(51220795-51220911)
chr4 (234-467)||(51220305-51220537)
chr4 (10-96)||(35250035-35250121)
chr4 (320-430)||(51219540-51219646)
chr4 (245-280)||(35250268-35250303)
chr4 (364-450)||(51220940-51221028)
[»] chr1 (19 HSPs)
chr1 (254-391)||(27780941-27781078)
chr1 (254-381)||(27777434-27777561)
chr1 (254-381)||(27782400-27782527)
chr1 (226-446)||(21899126-21899349)
chr1 (224-446)||(17663423-17663648)
chr1 (227-326)||(38226964-38227063)
chr1 (239-350)||(38227192-38227306)
chr1 (224-446)||(17700331-17700556)
chr1 (254-326)||(38227135-38227207)
chr1 (239-326)||(38227048-38227135)
chr1 (227-293)||(27777591-27777657)
chr1 (227-293)||(27782304-27782370)
chr1 (362-412)||(22663779-22663829)
chr1 (254-291)||(27781080-27781117)
chr1 (503-555)||(38227348-38227400)
chr1 (254-293)||(27781156-27781195)
chr1 (475-513)||(27780888-27780926)
chr1 (242-293)||(27781234-27781285)
chr1 (262-299)||(21079010-21079047)
[»] chr8 (2 HSPs)
chr8 (380-554)||(44989125-44989308)
chr8 (316-471)||(44989772-44989927)


Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Original strand, 440682 - 441253
Alignment:
Q  8 aaatattataactaaacaaattcctaataaggaaaattgcatgattgcatcaaggatatccatcc----cacacaaaaatcataatatcattcttcataa 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  440682 aaatattataactaaacaaattcctaataaggaaaattacatgattgcatcaaggatatccatccatcccacacaaaaatcataatatcattcttcataa 440781  T
Q  104 gaaaactnnnnnnnnnnnntagacattgttggtttcatctttcaaaatcatcacttggaagataattcatgacaactcttgaccttaattcaattcgtca 203  Q
    |||||||            |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  440782 gaaaactataaaaaaaa--tagacactgttggtttcatctt-caaaatcatcacttggaagataattcatgacaactcttgaccttaattcaattcgtca 440878  T
Q  204 cnnnnnnnnngctataaaagaaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgacc 303  Q
    |         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  440879 caaaaaaaa-gctataaaagaaagagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggcc 440977  T
Q  304 ctaattcagtaacaccttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttaccttt 403  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  440978 ctaattcagtaacaccttcattaatcatcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttaccttt 441077  T
Q  404 aggaatcttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatcaccacttgttagcaacacaccttgttccttc 503  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441078 aggaattttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatcaccacttgttagcaacacaccttgttccttc 441177  T
Q  504 ttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttagtgccataacctccacgagatatat 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441178 ttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttagtgccataacctccacgagatatat 441253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 224 - 422
Target Start/End: Original strand, 51220004 - 51220201
Alignment:
Q  224 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 323  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||||  ||| |||     
T  51220004 aaagagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttcactttcg 51220103  T
Q  324 ttaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaac 422  Q
    ||||||||||||||||||||| ||| ||||||||    | |||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  51220104 ttaatcttcttctcttcaatatcattattagaggagtcatgttccttgcaatcttgtgatgtttgaaaaatc-tgtctttaggaatcttgaacctcaac 51220201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 35250151 - 35250265
Alignment:
Q  227 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 326  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||  || ||||||||    
T  35250151 gagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcatta 35250250  T
Q  327 atcttcttctcttca 341  Q
    |||||||||||||||    
T  35250251 atcttcttctcttca 35250265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 344
Target Start/End: Original strand, 51220795 - 51220911
Alignment:
Q  228 agacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaa 327  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| | ||||||||||||||||  ||| ||| ||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttcactttcgttaa 51220894  T
Q  328 tcttcttctcttcaata 344  Q
    |||||||||||||||||    
T  51220895 tcttcttctcttcaata 51220911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 234 - 467
Target Start/End: Complemental strand, 51220537 - 51220305
Alignment:
Q  234 taattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttct 333  Q
    ||||| ||||||| ||||||| ||||||||||||| || || |||||| ||||| | |||  | |||| || |||| |||  ||||||||||||||||||    
T  51220537 taattggtttcatattcaaaagcatcacttggaagatcattaaaatcataattcataacatgtattgatccgaattaagtttcaccttcattaatcttct 51220438  T
Q  334 tctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaacgccaa---ctt 430  Q
    ||||||||||   ||| ||| | | |||   ||||||||||||||| |||||| ||||||||||| |||||| ||| ||||| ||||||||| |    ||    
T  51220437 tctcttcaat---atggttacaag-aggcaattccttgcaatcttgagatgttcgaaaaatcttatctttagaaattttgaaactcaacgccgaattgtt 51220342  T
Q  431 cttttcattgtggcaattatctttcaatgtttcatca 467  Q
    |||||||||||||| || ||| ||| ||| |||||||    
T  51220341 cttttcattgtggctatcatccttctatgattcatca 51220305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 35250035 - 35250121
Alignment:
Q  10 atattataactaaacaaattcctaataaggaaaattgcatgattgcatcaaggatatccatcccacacaaaaatcataatatcattc 96  Q
    ||||| ||||||||||| |||| | ||||||||||| ||||||  |||||||| ||| ||||||||||||||| |||||||||||||    
T  35250035 atattttaactaaacaacttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattc 35250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 430
Target Start/End: Complemental strand, 51219646 - 51219540
Alignment:
Q  320 ttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctc 419  Q
    ||||| ||||||||||||||||||| | | |||||| |     ||||||||||||||||| |||||||| ||||||||  |||||| | ||||||| |||    
T  51219646 ttcatcaatcttcttctcttcaatatcgttattagaagc----ggttccttgcaatcttgagatgtttgcaaaatcttgtctttagaactcttgaaactc 51219551  T
Q  420 aacgccaactt 430  Q
    |||||| ||||    
T  51219550 aacgccgactt 51219540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 35250268 - 35250303
Alignment:
Q  245 atcttcaaaatcatcacttggaagctcgttcaaatc 280  Q
    ||||||||||||||||||||||||||||||||||||    
T  35250268 atcttcaaaatcatcacttggaagctcgttcaaatc 35250303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 51220940 - 51221028
Alignment:
Q  364 gttccttgcaatcttgtgatgtttgaaaaa-tcttacctttaggaatcttgaacctcaacgccaacttct---tttcattgtggcaattat 450  Q
    |||||||||||||  ||||||||||||||| ||||  ||||||||||||| ||||| ||| || ||||||   |||||||||||| |||||    
T  51220940 gttccttgcaatc--gtgatgtttgaaaaaatcttgtctttaggaatcttaaaccttaacacccacttcttcatttcattgtggctattat 51221028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 254 - 391
Target Start/End: Complemental strand, 27781078 - 27780941
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 353  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||  ||||||    
T  27781078 atcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttctcttcaatactttgatta 27780979  T
Q  354 gaggtaggaggttccttgcaatcttgtgatgtttgaaa 391  Q
    |||| || |||||||||||||| ||||| |||||||||    
T  27780978 gaggcagcaggttccttgcaatattgtggtgtttgaaa 27780941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 27777561 - 27777434
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 353  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| |||||||||||||||||||  ||||||    
T  27777561 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttcaatactttgatta 27777462  T
Q  354 gaggtaggaggttccttgcaatcttgtg 381  Q
    |||| || ||||||||| ||||||||||    
T  27777461 gaggcagtaggttcctttcaatcttgtg 27777434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 27782400 - 27782527
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 353  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| ||||||||||| |||||||  ||||||    
T  27782400 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcatcaatactttgatta 27782499  T
Q  354 gaggtaggaggttccttgcaatcttgtg 381  Q
    |||| || ||||||||| ||||||||||    
T  27782500 gaggcagaaggttccttacaatcttgtg 27782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 226 - 446
Target Start/End: Original strand, 21899126 - 21899349
Alignment:
Q  226 agagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatt 325  Q
    ||||||||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||||| |   |||| ||||||||||||| ||  |||||||  |    
T  21899126 agagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcaccttcgct 21899225  T
Q  326 aatcttcttct---cttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaac 422  Q
    |||||| ||||   |||||||| |||| ||||||     |||||||||||||||||| ||| |||| ||||||||  ||||||||||||| |||||||||    
T  21899226 aatctttttcttgccttcaatatcatggttagagtctacaggttccttgcaatcttgcgatttttgtaaaatcttgtctttaggaatcttcaacctcaac 21899325  T
Q  423 gccaacttcttttcattgtggcaa 446  Q
     |||| |||||||| ||| |||||    
T  21899326 accaagttcttttcgttgcggcaa 21899349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 224 - 446
Target Start/End: Complemental strand, 17663648 - 17663423
Alignment:
Q  224 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 323  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||| ||  || ||||     
T  17663648 aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggtttcatcttcg 17663549  T
Q  324 ttaa---tcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctca 420  Q
     |||   ||||| |  |||||||| || | ||||||   |  ||||||||| ||||||||||||||||||||||| |  ||||||||||| | ||| |||    
T  17663548 ctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttgaaaaatcgtgtctttaggaatcctcaacttca 17663449  T
Q  421 acgccaacttcttttcattgtggcaa 446  Q
     | |||| |||||||| |||||||||    
T  17663448 gcaccaagttcttttcgttgtggcaa 17663423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 227 - 326
Target Start/End: Original strand, 38226964 - 38227063
Alignment:
Q  227 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 326  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||    
T  38226964 gagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcatta 38227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 38227192 - 38227306
Alignment:
Q  239 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaa---tcttcttc 335  Q
    ||||||| |||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||   ||||||||    
T  38227192 agtttcaccttcattatcgtcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttcttc 38227291  T
Q  336 tcttcaataccatga 350  Q
    ||||||||| |||||    
T  38227292 tcttcaatatcatga 38227306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 224 - 446
Target Start/End: Original strand, 17700331 - 17700556
Alignment:
Q  224 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 323  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| ||||||||||||| ||  || |||      
T  17700331 aaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggtttcatcttag 17700430  T
Q  324 ttaa---tcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctca 420  Q
     |||   ||||| |  |||||||| || | ||||||   |  ||||||||| ||||||||||||||||||||||| |  ||||||||||| | ||| |||    
T  17700431 ctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttgaaaaatcgtgtctttaggaatcctcaacttca 17700530  T
Q  421 acgccaacttcttttcattgtggcaa 446  Q
     | |||| |||||||| |||||||||    
T  17700531 gcaccaagttcttttcgttgtggcaa 17700556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 38227135 - 38227207
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 326  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatta 38227207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 38227048 - 38227135
Alignment:
Q  239 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 326  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||   |||||||||||    
T  38227048 agtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatta 38227135  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 27777657 - 27777591
Alignment:
Q  227 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 293  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27777657 gagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

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Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 27782304 - 27782370
Alignment:
Q  227 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 293  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27782304 gagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 22663779 - 22663829
Alignment:
Q  362 aggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatctt 412  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  22663779 aggttccttgcaattttgtgatgtttgaaaaatcttgtctttaggaatctt 22663829  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 27781117 - 27781080
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttca 291  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 38227348 - 38227400
Alignment:
Q  503 cttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttag 555  Q
    |||||||||||||| ||||||||||||||||||||| || |||| ||||||||    
T  38227348 cttcttcttctcattatcatccatcatattgcaagagagatttttccttttag 38227400  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 27781195 - 27781156
Alignment:
Q  254 atcatcacttggaagctcgttcaaatcaaaattcttcaca 293  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcaca 27781156  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 513
Target Start/End: Complemental strand, 27780926 - 27780888
Alignment:
Q  475 cacttgttagcaacacaccttgttccttcttcttcttct 513  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27780926 cacttgttagcaacacatcttgttccttcttcttcttct 27780888  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 27781285 - 27781234
Alignment:
Q  242 ttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 293  Q
    |||||||||||||| ||  ||||||||| ||||| |||||||||||||||||    
T  27781285 ttcatcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 21079047 - 21079010
Alignment:
Q  262 ttggaagctcgttcaaatcaaaattcttcacaactttt 299  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21079047 ttggaagctcgttcaaatcaaaattcctaacaactttt 21079010  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 380 - 554
Target Start/End: Complemental strand, 44989308 - 44989125
Alignment:
Q  380 tgatgtttgaaaaatcttacctttaggaatcttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatcac----- 474  Q
    ||||||||||||||||||  |||||||| |||| ||||||||| |||| || ||||||||||||| |||||| ||| |  ||| ||| |||||||         
T  44989308 tgatgtttgaaaaatcttgtctttaggattcttcaacctcaacaccaagttgttttcattgtggctattatccttccacatttgatctatatcacttaca 44989209  T
Q  475 -------cacttgttagcaacacaccttgttccttcttcttcttctcatcatcatccatcatattgcaagaaagtttttgcctttta 554  Q
           |||||||||||||||||||||| |||||| ||||||   ||| ||||||||||||||||||||||||| |||||||||||    
T  44989208 acatgaccacttgttagcaacacaccttgctccttcatcttct---cattatcatccatcatattgcaagaaagtgtttgcctttta 44989125  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 316 - 471
Target Start/End: Original strand, 44989772 - 44989927
Alignment:
Q  316 caccttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaa 415  Q
    ||||||| ||||||||||||| ||||||| |||||||||||     ||||||||||||||||||||||||| ||||||||||  |||||||| | || |     
T  44989772 caccttcgttaatcttcttctattcaatatcatgattagagccttcaggttccttgcaatcttgtgatgttagaaaaatcttctctttaggattattcag 44989871  T
Q  416 cctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatat 471  Q
    ||||| | ||||  | |||||||| |||| | |||  ||| |||||||||||||||    
T  44989872 cctcagcaccaagatgttttcattatggcgaatattcttccatgtttcatcaatat 44989927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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