View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-8 (Length: 455)
Name: NF5233-Insertion-8
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 35361875 - 35361433
Alignment:
| Q |
8 |
agtccaagaacgaaatactccttgcaacgatgacaataagaaatactgactctttcgagtccaatgtcaatcatacaaatgactaggatagtaaagcatt |
107 |
Q |
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| T |
35361875 |
agtccaagaacgaaatactccttgcaacgatgacaataagaaatactgactcttttgagtccaatgtcaatcatacaaatgactaggatagtaaagcatt |
35361776 |
T |
|
| Q |
108 |
tcgaagtcggtaacaaggactaagtggatactcaaacaacaacgacgcagaaccttgtctatggaaataagcagaattcaacagatttgaaaaatattca |
207 |
Q |
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| T |
35361775 |
tcgaagtcggtaacaaggactaagtggatactcaaacaacaacgacgcaaaaccttgtctatggaaataagcagaattcaacatatttgaaaaatattca |
35361676 |
T |
|
| Q |
208 |
gagaattctaggacatgaacacgcataacaggtagcactgacgcaagctaccttgccttccaacgtggaggaggcaataccgaatatcagaagagagatc |
307 |
Q |
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| T |
35361675 |
gagaattctaggacatgaacacgcataacatgtagcactgacgcaagctaccttgccttccaacgtggaggaggcaataccgaatatcagaagagagatc |
35361576 |
T |
|
| Q |
308 |
acaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgcacaccttgtagaatgacaacaaccataaagaa |
407 |
Q |
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| T |
35361575 |
acaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcaccacatgactaaccctttgcacaccttgtagaatgacaacaaccataaggaa |
35361476 |
T |
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| Q |
408 |
gacgacgtgagtggttgggaaaactgtctggagcttggacctc |
450 |
Q |
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| T |
35361475 |
gacgacgcgagtggttgggaaaactgtatggagcttggacctc |
35361433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 385
Target Start/End: Original strand, 13330428 - 13330656
Alignment:
| Q |
157 |
gaaccttgtctatggaaataagcagaattcaacagatttgaaaaatattcagagaattctaggacatgaacacgcataacaggtagcactgacgcaagct |
256 |
Q |
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||||||||||| |||||| ||| || ||||||||| |||||||| |||||||||| | | |||||||||| ||||| ||||| || | ||||| | |
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| T |
13330428 |
gaaccttgtctttggaaacctgcataactcaacagatcagaaaaataatcagagaattttggaacatgaacacacataatcagtagcgctaatgcaagat |
13330527 |
T |
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| Q |
257 |
accttgccttccaacgtggaggaggcaataccgaatatcagaagagagatcacaaaatcaccaccaaccatcaaaatccaaaaagatctggatgcgtcac |
356 |
Q |
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| T |
13330528 |
acctcaccttttaacacgaacaaggcagtaccaaatatgagaagagagaacacagaaccaccaccaaccatcaaaattctgaaagatccggatgcatcac |
13330627 |
T |
|
| Q |
357 |
cacatgact-aaccctttgcacaccttgta |
385 |
Q |
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| T |
13330628 |
gagat-actcaaacctttgcacaccttgta |
13330656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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