View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233-Insertion-9 (Length: 400)
Name: NF5233-Insertion-9
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 42313927 - 42313547
Alignment:
| Q |
8 |
ctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttcc |
107 |
Q |
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| T |
42313927 |
ctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttcc |
42313828 |
T |
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| Q |
108 |
ataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcctattgtgtcacgtgcagtgtaaaatgatgcatcaagt |
207 |
Q |
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| T |
42313827 |
ataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcctattgtgtcacgtgcagtgtaaaatgatgcatcaagt |
42313728 |
T |
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| Q |
208 |
ttgcctacatatgcctcataacctttgtagaaagctcttgctccaattagcttcctgcttgtggaacagttagaaagaattatggttggatgtgaaatat |
307 |
Q |
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| T |
42313727 |
ttgcctacatatgcctcataacctttgtagaaagctcttgctccaattagcttcctgcttgtggaacagttagaaagaattatggttggatgtgaaatat |
42313628 |
T |
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| Q |
308 |
agcccggattttattggtatggagaatactccgcacatctctctattaagtatgagactctccttgtctctgctcctccac |
388 |
Q |
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| T |
42313627 |
agcccggattttattggtatggagaatactccgcacatctctctattaagtatgagactctccttgtctctgatccaccac |
42313547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 31108828 - 31108871
Alignment:
| Q |
127 |
acgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
170 |
Q |
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| T |
31108828 |
acgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 24266846 - 24266787
Alignment:
| Q |
39 |
ccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
98 |
Q |
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| T |
24266846 |
ccaacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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