View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5233_high_1 (Length: 837)

Name: NF5233_high_1
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5233_high_1
NF5233_high_1
[»] chr7 (5 HSPs)
chr7 (5-358)||(6723953-6724305)
chr7 (607-822)||(6725168-6725383)
chr7 (404-589)||(6724311-6724494)
chr7 (210-249)||(22334221-22334260)
chr7 (175-248)||(11466937-11467010)
[»] chr5 (7 HSPs)
chr5 (163-363)||(18179213-18179410)
chr5 (223-463)||(7741250-7741483)
chr5 (163-233)||(20101000-20101070)
chr5 (209-294)||(30791606-30791690)
chr5 (164-232)||(16072261-16072329)
chr5 (160-232)||(19571017-19571090)
chr5 (176-241)||(20695926-20695991)
[»] chr8 (6 HSPs)
chr8 (158-469)||(6887069-6887361)
chr8 (262-371)||(8541716-8541825)
chr8 (175-222)||(13528979-13529026)
chr8 (175-222)||(13618518-13618565)
chr8 (173-255)||(35134469-35134551)
chr8 (380-441)||(35134664-35134725)
[»] chr4 (7 HSPs)
chr4 (160-279)||(21048325-21048442)
chr4 (159-233)||(18778301-18778375)
chr4 (163-295)||(33520125-33520256)
chr4 (163-228)||(8926417-8926482)
chr4 (173-241)||(42498738-42498807)
chr4 (184-249)||(9575847-9575912)
chr4 (382-459)||(33519972-33520049)
[»] chr2 (5 HSPs)
chr2 (160-253)||(31275245-31275338)
chr2 (163-227)||(25461225-25461289)
chr2 (173-225)||(19004576-19004628)
chr2 (160-279)||(21847297-21847415)
chr2 (74-123)||(13589906-13589955)
[»] chr1 (4 HSPs)
chr1 (207-296)||(28411527-28411614)
chr1 (161-267)||(23420498-23420602)
chr1 (178-249)||(23506766-23506837)
chr1 (160-255)||(33175505-33175600)
[»] scaffold0280 (1 HSPs)
scaffold0280 (390-469)||(17207-17286)
[»] chr6 (10 HSPs)
chr6 (185-451)||(12971324-12971580)
chr6 (175-313)||(12960292-12960423)
chr6 (382-428)||(16440361-16440407)
chr6 (163-296)||(21604662-21604793)
chr6 (208-296)||(26498765-26498851)
chr6 (185-295)||(12966952-12967060)
chr6 (382-441)||(12967138-12967197)
chr6 (185-295)||(12969138-12969246)
chr6 (382-441)||(12969324-12969383)
chr6 (394-443)||(26498945-26498994)
[»] chr3 (1 HSPs)
chr3 (160-246)||(7779421-7779507)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 358
Target Start/End: Original strand, 6723953 - 6724305
Alignment:
Q  5 ggagaaattaaatagggcagagatgaagaaaagcataaggttcaactactggtagatgtgtgttgcgcactatgagttgcatgtcatgtagctaagaaga 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6723953 ggagaaattaaataggacagagatgaagaaaagcataaggttcaactactggtagatgtgtgttgcacactatgagttgcatgtcatgtagctaagaaga 6724052  T
Q  105 attcaaaagtggtcagctagtggtggatgcgcaatgcatgcattaagttgtgtgacaccaaatcgtacacaagtaataaggtagtaagttatcgtctcta 204  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6724053 attcaaaagtggtcagctactggtggatgcgcaatgcatgtattaagttatgtgtcaccaaatcatacacaagtaataaggtagtaagttatcgtctcta 6724152  T
Q  205 tcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttcca 304  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724153 tcaggattgtcattcaacttggtaattagcagaaattgttagaaat-aatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttcca 6724251  T
Q  305 atgcgagatttctgtgttgtgatttagaagtatgatggtgatcagggaatcctt 358  Q
    |||||||||| || |||||| |||||||||||| ||||||||||||||||||||    
T  6724252 atgcgagattactttgttgtaatttagaagtataatggtgatcagggaatcctt 6724305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 607 - 822
Target Start/End: Original strand, 6725168 - 6725383
Alignment:
Q  607 catgccaagcaagagacctttttcatttcggaaaggacaactaaagctttgtaacaacacaaataaatcttttgagagtgtcgtcgacaccccaaataaa 706  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6725168 catgccaagcaagagacctttttcatttcggaaatgacaactaaagctttgtaacaacacaaataaatcttttgagagtgtcgtcgacaccccaaatcaa 6725267  T
Q  707 atagactcgacaaacaaacacgttacaaaaagatgtacttccgactccgatagctctaaccaccatcaacacaaagattattgcaacaaataaaaattgc 806  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6725268 atagactcgaccaacaaacatgttacaaaaagatgtacttccgactccgatagctctaaccaccatcaacacaaagattattacaacaaataaaaattgc 6725367  T
Q  807 catgactagtcaagct 822  Q
    ||||||||||||||||    
T  6725368 catgactagtcaagct 6725383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 404 - 589
Target Start/End: Original strand, 6724311 - 6724494
Alignment:
Q  404 attattagtttatgacatggctttcgttttaagaaagtggaatatgaccttgtgatgtattagtggccgaccaatggaatatgacctttcgatttaagaa 503  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6724311 attattagtttatgacaagtctttcgttttaagaaagtggaatatgaccttgtgatgtattagtggacgaccaatggaatatgacctttcgatttaagaa 6724410  T
Q  504 agtggaattaaccctcagagagagccttcaccttatcagccttgacgctcgggttctatacatattgcttggtaccccatcaaaga 589  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6724411 agtggaattaaccctc--agagagccttcaccttatcagccttgacgcttgggttctatacatattgcttggtaccccatcaaaga 6724494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 22334221 - 22334260
Alignment:
Q  210 attgtcattcaacttggtaattagcggaatttgttagaaa 249  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  22334221 attgtcattcaacttggtaattagctgaatttattagaaa 22334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 11466937 - 11467010
Alignment:
Q  175 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaa 248  Q
    ||||||||| |||||| ||||| ||||| |   ||||||||||||||||| | ||||||| |||||| ||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 163 - 363
Target Start/End: Complemental strand, 18179410 - 18179213
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 262  Q
    |||||| || ||||||||||| |||||||||||| || || ||  | ||| || ||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  18179410 caaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaataaa-agaattaa 18179312  T
Q  263 aaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagatttctgtgttgtgatttagaagtatgatggtgatcagggaatccttgaat 362  Q
    || |||||||||||||||| ||||||||||||||  || |||||||||||||    |||||||||| |||||||| |  ||||| |  ||||||||||||    
T  18179311 aa-gagatgaagtggtttgcaggattttaattgt-tttcccaatgcgagattaagttgttgtgattcagaagtataaccgtgattacagaatccttgaat 18179214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 223 - 463
Target Start/End: Original strand, 7741250 - 7741483
Alignment:
Q  223 ttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagatttctgtgtt 322  Q
    ||||||||| ||||||||| ||||||||||  | | | ||||| ||||||||||||||  | ||||||||||||  |  ||||||||| |||  | ||||    
T  7741250 ttggtaattggcggaatttattagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgtcttgcccaatgcgaaattagtatgtt 7741349  T
Q  323 gtgatttagaagtatgatggtgatcagggaatccttgaatcccccctccctctttggtttttgttgaaattaacttggttgattattagtttatgacatg 422  Q
    |||||| |||||| | | |  ||| |   |||||||||||||||| ||  ||||||       ||| | |||||| ||||||||||||||||||||||||    
T  7741350 gtgattcagaagtttaacgtcgattacaaaatccttgaatcccccttctgtctttg-------ttggacttaactcggttgattattagtttatgacatg 7741442  T
Q  423 gctttcgttttaagaaagtggaatatgaccttgtgatgtat 463  Q
      ||||  ||||||||||| |||||||||| ||||||||||    
T  7741443 tttttcaatttaagaaagtagaatatgaccatgtgatgtat 7741483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 20101070 - 20101000
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 233  Q
    |||||| ||| |||||||||| |||||||||||| ||||| || ||||||||| |||||||||||| ||||    
T  20101070 caaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttag 20101000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 30791690 - 30791606
Alignment:
Q  209 gattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaatt 294  Q
    ||||||| ||||| ||| ||||||||||||||| || |||||||| ||| || | || ||||||||||||||| ||| ||||||||    
T  30791690 gattgtcgttcaaattgataattagcggaatttatttgaaataaa-agattttagaaaagatgaagtggtttgcagggttttaatt 30791606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 16072329 - 16072261
Alignment:
Q  164 aaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaatta 232  Q
    ||||||||| ||||||| || ||||||||| || ||||| |  |||||||||| |||||||||||||||    
T  16072329 aaatcgtactcaagtaagaaagtagtaagtaattgtctccacaaggattgtcagtcaacttggtaatta 16072261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 19571090 - 19571017
Alignment:
Q  160 caccaaatcgtacacaagtaataaggtagtaagtt-atcgt-ctctatcaggattgtcattcaacttggtaatta 232  Q
    |||||||||||| |||| |||||| |||||||||| ||||| |||||  |||||||||||||||||| |||||||    
T  19571090 caccaaatcgta-acaaataataaagtagtaagtttatcgttctctacaaggattgtcattcaacttagtaatta 19571017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 20695991 - 20695926
Alignment:
Q  176 agtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaattt 241  Q
    |||||||| |||||||||||||||||| |   |||||||| ||||||| ||||||||  |||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaattt 20695926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 158 - 469
Target Start/End: Original strand, 6887069 - 6887361
Alignment:
Q  158 gacaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 257  Q
    ||||||||||| ||| |||||| |||  ||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||| ||||||||           
T  6887069 gacaccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaaat------- 6887161  T
Q  258 attaaaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagatttctgtgttgtgatttagaagtatgatggtgatcagggaatcct 357  Q
        ||||||||||||| ||||||||||||||||||||| ||  |||||||||||||    |||||||| |  || || |   || ||| ||||||||||    
T  6887162 ----aaaagagatgaag-ggtttgtaggattttaattgtcctgcccaatgcgagattagattgttgtgactcggacgtttaccggagattagggaatcct 6887256  T
Q  358 tgaatcccccctccctctttggtttttgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagtggaatatgaccttgtg 457  Q
    | |||||| | ||| ||        |||||| ||| |||| | |||||||||||||||||| |||  ||||| ||||||||| | ||||||||||  |||    
T  6887257 taaatccctcatccatc-------attgttggaatcaactcgattgattattagtttatgaaatgtgtttcgatttaagaaactagaatatgaccccgtg 6887349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 8541825 - 8541716
Alignment:
Q  262 aaaagagatgaagtggtttgtaggattttaattgtactttccaatgcgagatttctgtgttgtgatttagaagtatgatggtgatcagggaatccttgaa 361  Q
    |||||||||||||||||||| |||||||||||| | ||  |||||||||||||    |||||||||| | |||||| | |  ||| ||||||||| ||||    
T  8541825 aaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagattagggaatccatgaa 8541726  T
Q  362 tcccccctcc 371  Q
    ||||| ||||    
T  8541725 tcccctctcc 8541716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 13528979 - 13529026
Alignment:
Q  175 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 222  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13528979 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 13618518 - 13618565
Alignment:
Q  175 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaac 222  Q
    ||||||||| |||||||||||||||||| ||  |||||||||||||||    
T  13618518 aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 35134469 - 35134551
Alignment:
Q  173 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 255  Q
    |||||||||||  |||| |||||  ||||| || ||||||||| || |||||||||||||||  ||||| |||||| ||||||    
T  35134469 acaagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaatttattagaagtaaata 35134551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 35134664 - 35134725
Alignment:
Q  380 tttttgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagt 441  Q
    ||||| ||||||||||| | ||| || |||||||||||||||| |||| | |||||||||||    
T  35134664 tttttattgaaattaacgttgttaatcattagtttatgacatgtcttttgatttaagaaagt 35134725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 21048442 - 21048325
Alignment:
Q  160 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaat 259  Q
    ||||||||||||| ||| ||||||    ||||||||||||||  |  ||||||||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  21048442 caccaaatcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattagaaataaa-agaat 21048344  T
Q  260 taaaaagagatgaagtggtt 279  Q
    |  |||||||||||||||||    
T  21048343 t-taaagagatgaagtggtt 21048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 18778375 - 18778301
Alignment:
Q  159 acaccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattag 233  Q
    ||||||||| |||| |||||||||| ||||||||||||||| || ||  |||||||| |||||||| ||||||||    
T  18778375 acaccaaattgtactcaagtaataaagtagtaagttatcgtttccatgtggattgtcgttcaactttgtaattag 18778301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 33520256 - 33520125
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 262  Q
    ||||||||| ||||||| ||| ||||||||||||  |||  || |  |||||| ||||||| | ||| ||| ||||||| ||| |||||||| ||||| |    
T  33520256 caaatcgtagacaagtagtaaagtagtaagttattctcttcataaaaattgtcgttcaactcgataaatagtggaatttattataaataaat-gaattta 33520158  T
Q  263 aaagagatgaagtggtttgtaggattttaattg 295  Q
    ||||||||||| ||||||  ||| |||||||||    
T  33520157 aaagagatgaaatggtttacagggttttaattg 33520125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 8926482 - 8926417
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggta 228  Q
    |||||| ||| |||||||||| |||| ||||||||||||| ||  |||||||| ||||||||||||    
T  8926482 caaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaacttggta 8926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 42498807 - 42498738
Alignment:
Q  173 acaagtaataaggtagtaagtta-tcgtctctatcaggattgtcattcaacttggtaattagcggaattt 241  Q
    ||||||||||| ||||||||| | | || | ||| ||||||||| |||||||||||||||||||||||||    
T  42498807 acaagtaataatgtagtaagtgaattgtttttataaggattgtcgttcaacttggtaattagcggaattt 42498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 9575912 - 9575847
Alignment:
Q  184 ggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaa 249  Q
    |||||||| || ||||||||||   ||||||| ||||||||| ||||||||||||| | |||||||    
T  9575912 ggtagtaaattgtcgtctctatagagattgtcgttcaacttgataattagcggaatatattagaaa 9575847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 33520049 - 33519972
Alignment:
Q  382 tttgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagtggaatatgaccttgtgat 459  Q
    ||||||| |||||| ||| ||||||||||||||||||| || |||| | ||| ||| ||| ||| ||||||| |||||    
T  33520049 tttgttggaattaatttgattgattattagtttatgacttgtctttggatttgagagagtagaacatgacctcgtgat 33519972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 31275338 - 31275245
Alignment:
Q  160 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaa 253  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||||  ||| ||||||||| |||  ||| || |||||||||||    
T  31275338 caccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttattagaaataaa 31275245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 25461289 - 25461225
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggt 227  Q
    ||||| ||||||||||||||| |||||||||||||||||| |   |||||||| |||||||||||    
T  25461289 caaattgtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 19004576 - 19004628
Alignment:
Q  173 acaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttg 225  Q
    |||| |||||| |||||||||||||||||||||  |||||||| |||||||||    
T  19004576 acaaataataaagtagtaagttatcgtctctatatggattgtcgttcaacttg 19004628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 21847297 - 21847415
Alignment:
Q  160 caccaaatcgtacacaagtaa-taaggtagtaagttatcgtctctatca-ggattgtcattcaacttggtaattagcggaatttgttagaaataaataga 257  Q
    |||||||||||| | |||||| ||| ||| |||| |||||| ||| ||| ||||||||||||||||| |||||||| || |||| |||||||| || | |    
T  21847297 caccaaatcgtaaataagtaactaaagtactaagctatcgtatct-tcatggattgtcattcaacttagtaattagtgggatttattagaaatcaaaata 21847395  T
Q  258 attaaaaagagatgaagtggtt 279  Q
    ||  ||||||||| ||||||||    
T  21847396 at--aaaagagataaagtggtt 21847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 13589955 - 13589906
Alignment:
Q  74 ctatgagttgcatgtcatgtagctaagaagaattcaaaagtggtcagcta 123  Q
    ||||||||||||||||  | | |||||||| |||||||||||||||||||    
T  13589955 ctatgagttgcatgtcgcgcatctaagaaggattcaaaagtggtcagcta 13589906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 28411614 - 28411527
Alignment:
Q  207 aggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 296  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||| || | |||| |||||||||||||||||||||||  ||||||||||    
T  28411614 aggattgccattcaactcgttaattagcggaatttattagaaat-aacaaaatt-aaaagagatgaagtggtttgtagtgttttaattgt 28411527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 23420498 - 23420602
Alignment:
Q  161 accaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaatt 260  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |  ||||||||| |||||||| | ||||| | |||||| ||||||   ||||||||     
T  23420498 accaaatcgta-acaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattagaagcgaatagaatg 23420595  T
Q  261 aaaaaga 267  Q
    |||||||    
T  23420596 aaaaaga 23420602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 23506837 - 23506766
Alignment:
Q  178 taataaggtagtaagttatcgtctctatcag-gattgtcattcaacttggtaattagcggaatttgttagaaa 249  Q
    |||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||| |||||| |||||||    
T  23506837 taataaagtagtaagttatcgtctcta-cagtgaatgtcgttcaacttggtaattagcagaatttattagaaa 23506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 33175505 - 33175600
Alignment:
Q  160 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaata 255  Q
    ||||||||| || |||||||||||  |||||||||||| |||| |    ||||||| |||||||| | |||||| ||||||| |||||| ||||||    
T  33175505 caccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattagaagtaaata 33175600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 17286 - 17207
Alignment:
Q  390 aattaacttggttgattattagtttatgacatggctttcgttttaagaaagtggaatatgaccttgtgatgtattagtgg 469  Q
    ||||||||||||||||||||||| |||||  || |||| | ||||||||||| ||||||||||  ||||||||| |||||    
T  17286 aattaacttggttgattattagtgtatgaattgtctttagatttaagaaagtagaatatgaccccgtgatgtatcagtgg 17207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 451
Target Start/End: Original strand, 12971324 - 12971580
Alignment:
Q  185 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 284  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| || |  ||||| | || ||||||||||||||||      
T  12971324 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagtaga--gaatttagaaaagatgaagtggtttgtga 12971421  T
Q  285 gattttaattgtactt-tccaatgcgagatttctgtgttgtgatttagaagtatgatggtgatcagggaatccttgaatcccccctccctctttggtttt 383  Q
    | ||||||||| |||| || ||| | ||| |   ||  |||| || |||||||| |||| ||| || ||||||||||||||||| ||| | ||||         
T  12971422 ggttttaattg-acttgtcaaatacaagaatag-gttatgtggttcagaagtataatggcgattagagaatccttgaatcccccttccttatttg----- 12971514  T
Q  384 tgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagtggaatatgac 451  Q
      ||| |||||||| ||||||||||||||||||||| |  |||||| ||||||||||| ||| |||||    
T  12971515 --ttggaattaactcggttgattattagtttatgacctaactttcgatttaagaaagtagaacatgac 12971580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 12960292 - 12960423
Alignment:
Q  175 aagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaag 274  Q
    ||||||||| ||  ||||||| |||||| || | ||||||| ||||||||||||||||| | ||||| ||| || |||| | |||  ||||||||| |||    
T  12960292 aagtaataaagtcataagttaccgtctccataaagattgtcgttcaacttggtaattagagaaatttcttaaaagtaaaaaaaat--aaaagagataaag 12960389  T
Q  275 tggtttgtaggattttaattgtactttccaatgcgagat 313  Q
         ||||||||||||||||| ||| ||||||||||||    
T  12960390 -----tgtaggattttaattgtccttcccaatgcgagat 12960423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 16440407 - 16440361
Alignment:
Q  382 tttgttgaaattaacttggttgattattagtttatgacatggctttc 428  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  16440407 tttgttggaattaacgtggttgattattagtttatgacatgtctttc 16440361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 21604662 - 21604793
Alignment:
Q  163 caaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaa 262  Q
    |||||| ||| ||| |||||| |||||||| |||| |||  |  | |||||||  |||||| | |||||||||||||||  || |||||| |||||||||    
T  21604662 caaatcttacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttactataaataa-tagaattaa 21604760  T
Q  263 aaagagatgaagtggtttgtaggattttaattgt 296  Q
    || ||||||||||| |||| |||| |||||||||    
T  21604761 aa-gagatgaagtgatttgcaggaatttaattgt 21604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 26498765 - 26498851
Alignment:
Q  208 ggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtaggattttaattgt 296  Q
    |||||||| ||||||||||||||||| ||||||| |||||| |||  |||||| | || ||| ||||| |||||| || ||||||||||    
T  26498765 ggattgtcgttcaacttggtaattagaggaatttattagaagtaa--agaatttataaaagacgaagttgtttgttgggttttaattgt 26498851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 12966952 - 12967060
Alignment:
Q  185 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 284  Q
    ||||||||||||||||||  |  ||||| |||||||||| ||||||| |||| |||| |||||| |  | |||||| | || ||||||||||||||||      
T  12966952 gtagtaagttatcgtctccgtagggattatcattcaactcggtaattggcggcatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12967049  T
Q  285 gattttaattg 295  Q
    | |||||||||    
T  12967050 ggttttaattg 12967060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 441
Target Start/End: Original strand, 12967138 - 12967197
Alignment:
Q  382 tttgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagt 441  Q
    ||||||| |||||||| |||| |||||||||||||||| |  |||||| |||||||||||    
T  12967138 tttgttggaattaactcggttaattattagtttatgacctaactttcgatttaagaaagt 12967197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 12969138 - 12969246
Alignment:
Q  185 gtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttagaaataaatagaattaaaaagagatgaagtggtttgtag 284  Q
    ||||| ||||||||||||  |  ||||| |||||||||| ||||||| ||||||||| |||||| |  | |||||| | || ||||||||||||||||      
T  12969138 gtagtcagttatcgtctccgtagggattatcattcaactcggtaattggcggaatttattagaagt--agagaatttagaaaagatgaagtggtttgtga 12969235  T
Q  285 gattttaattg 295  Q
    | |||||||||    
T  12969236 ggttttaattg 12969246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 441
Target Start/End: Original strand, 12969324 - 12969383
Alignment:
Q  382 tttgttgaaattaacttggttgattattagtttatgacatggctttcgttttaagaaagt 441  Q
    ||||||| |||||||| |||| |||||||||||||||| |  |||||| |||||||||||    
T  12969324 tttgttggaattaactcggttaattattagtttatgacctaactttcgatttaagaaagt 12969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 26498945 - 26498994
Alignment:
Q  394 aacttggttgattattagtttatgacatggctttcgttttaagaaagtgg 443  Q
    |||||||||||||||||||||||||| || | |||  |||||||||||||    
T  26498945 aacttggttgattattagtttatgacttgtccttcaatttaagaaagtgg 26498994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 7779421 - 7779507
Alignment:
Q  160 caccaaatcgtacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcggaatttgttag 246  Q
    ||||||||| ||  |||||| |||| | ||||||||| ||||| || |||||||||||||||| |||||| |||| |||||| ||||    
T  7779421 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggattgtcattcaacatggtaaatagcagaatttattag 7779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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