View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_11 (Length: 348)
Name: NF5233_high_11
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_11 |
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| [»] scaffold0194 (2 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 26301 - 26454
Alignment:
| Q |
1 |
tcttagatccctcatgcctggttcatacgtgcaaagggtaattttaatttatttattttcttcaagaaaaattgtatgttctagctcactatattgcacc |
100 |
Q |
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| T |
26301 |
tcttagatccctcatgcctggttcatacgtgcaaagggtaattttaatttatttattttcttcaagaaaaattgtatgttctagctcactatattgcacc |
26400 |
T |
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| Q |
101 |
aaagttttaaacaatggttagagttagacacaaactaggaaagaagttgtaata |
154 |
Q |
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| T |
26401 |
aaagttttaaacaatggttagagttagacacaaactaggaaagaagttgtaata |
26454 |
T |
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Target: scaffold0194; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 26464 - 26592
Alignment:
| Q |
207 |
ggtcaacccagtataataaagcttccgcatacataggatctgagattgatttattatataattttgtttttgattttacaatatagggtgatcaagcttc |
306 |
Q |
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| T |
26464 |
ggtcaacccagtacactaaagcttccgcatacgcaggatctgagattgatttattatataattctgtttttgattttacaatatagggtgatcaagcttc |
26563 |
T |
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| Q |
307 |
tataattggaggggctatagagtttgtga |
335 |
Q |
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| T |
26564 |
tataattggaggggctatagagtttgtga |
26592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 36676157 - 36676124
Alignment:
| Q |
291 |
agggtgatcaagcttctataattggaggggctat |
324 |
Q |
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| T |
36676157 |
agggtgatcaagcttctataattggaggagctat |
36676124 |
T |
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