View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_15 (Length: 258)
Name: NF5233_high_15
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 8452902 - 8452677
Alignment:
| Q |
20 |
atcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagata |
119 |
Q |
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| T |
8452902 |
atcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatcttggtgcaagccggttacaagttcaagata |
8452803 |
T |
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| Q |
120 |
gggataaaggtttgaatttttattacatttaatttgatgatcattatgctgtatttcctattgttccttagtttaca-ttttnnnnnnntgataatttaa |
218 |
Q |
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| T |
8452802 |
gggataaaggtttgaatttttattacatttaatttgatgatcattatgttgtatttcctattgttccttagtttacatttttccccccctgataat---- |
8452707 |
T |
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| Q |
219 |
ttaatatccccctcttcatccttgcctatg |
248 |
Q |
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| T |
8452706 |
ttaatatccccctcttcatccttgcctatg |
8452677 |
T |
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