View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_18 (Length: 243)
Name: NF5233_high_18
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 34676726 - 34676543
Alignment:
| Q |
44 |
cactagtagcactaataacaagttgtttt-attatactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttgagagtg |
142 |
Q |
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| T |
34676726 |
cactagtagcactaataacaagttgtttttattatactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttgagagtg |
34676627 |
T |
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| Q |
143 |
accattaatatactttgtagtttcaactccatccaaatccaaatatacatgatctttgtttctgtgtatttgattgtgacatgt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676626 |
accattaatatactttgtagtttcaactccatccaaatccaaatatacatgatctttgtttctgtgtatttgattgtgacatgt |
34676543 |
T |
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