View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5233_high_2 (Length: 642)
Name: NF5233_high_2
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 38 - 622
Target Start/End: Complemental strand, 45037491 - 45036907
Alignment:
| Q |
38 |
aaatttattcacacaatcaataaatcaaaatatgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45037491 |
aaatttattcacacaatcaataaatcaaaatatgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
45037392 |
T |
|
| Q |
138 |
atgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45037391 |
gtgacgccataacatagcaagaacaagattgtaaacaaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
45037292 |
T |
|
| Q |
238 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggtt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45037291 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagcattgaagtaaagtgaaggaggtt |
45037192 |
T |
|
| Q |
338 |
gacccatttcctttggccaatgcactttttctggacattgttgacaataaccgattttgtattgtggtgtgtgactccaagttctctcgcaaaaacaatc |
437 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45037191 |
gacccatttcctttggccaatgaactttttctggacattgttgacaataaccgattttgtattgtggtgtgtgactccaagttctctcgcaaaaacaatc |
45037092 |
T |
|
| Q |
438 |
cataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaatgtctccgtccaagtatatcatcttgctgtattcc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45037091 |
cataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaatgtctccgtccaagtatatcatcttgctgtattcc |
45036992 |
T |
|
| Q |
538 |
acaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcacagatttattttatgaatcat |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45036991 |
acaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcacagatttattttatgaatcat |
45036907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 544
Target Start/End: Original strand, 45944411 - 45944585
Alignment:
| Q |
370 |
ggacattgttgacaataaccgattttgtattgtggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagat |
469 |
Q |
| |
|
|||||||||||||| || || || || || || || |||||||||||||| | || || ||||| ||||| ||||| ||||| | | |||| || |||| |
|
|
| T |
45944411 |
ggacattgttgacagtatccaatcttatactgaggagtgtgactccaagtcttttcacagaaacagtccatcacagcatagaagtaatcatcaggcagat |
45944510 |
T |
|
| Q |
470 |
caaagagatggtctatgttttcataaacttgaatgtctccgtccaagtatatcatcttgctgtattccacaaact |
544 |
Q |
| |
|
|||| ||||| || ||||||||| | ||||| ||||| || || ||||| |||||||||||||| ||| |||||| |
|
|
| T |
45944511 |
caaatagatgatcaatgttttcaaacacttggatgtcaccatctaagtagatcatcttgctgtactcctcaaact |
45944585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 45944023 - 45944147
Alignment:
| Q |
91 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttat |
190 |
Q |
| |
|
||||||||||||||||| | ||||| | |||||||||||| |||||||||||||| | ||| || | ||||||||||| || || || ||||| | |
|
|
| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgccacatcatggccaacacaagattgtacacattaggtataggcttgt |
45944122 |
T |
|
| Q |
191 |
aaatatccttgaaatacatattcaa |
215 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
45944123 |
atttatccttgaaatacatgttcaa |
45944147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 20395365 - 20395224
Alignment:
| Q |
81 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatggg |
180 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| | ||| |||||||| |||||||||||||| ||||| || || |||||||||||||| ||| |
|
|
| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgtaaacattaggg |
20395266 |
T |
|
| Q |
181 |
attggcttataaatatccttgaaatacatattcaagaaatct |
222 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
20395265 |
ataggcttatatttatcattgaaatacatattcaaaaaatct |
20395224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 37686915 - 37687052
Alignment:
| Q |
84 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
183 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
|
|
| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37687014 |
T |
|
| Q |
184 |
ggcttataaatatccttgaaatacatattcaagaaatc |
221 |
Q |
| |
|
|||||||| | || |||||||| || ||||| ||||| |
|
|
| T |
37687015 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37687052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 37698603 - 37698466
Alignment:
| Q |
84 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
183 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
|
|
| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37698504 |
T |
|
| Q |
184 |
ggcttataaatatccttgaaatacatattcaagaaatc |
221 |
Q |
| |
|
|||||||| | || |||||||| || ||||| ||||| |
|
|
| T |
37698503 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37698466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University