View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_3 (Length: 580)
Name: NF5233_high_3
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 7281352 - 7281857
Alignment:
| Q |
18 |
gtatatagccagccactacaaggtataattctaatccgtatcttccatttttcacaattatgaaatgatgtcccattctatagatctgtatttcataagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281352 |
gtatatagccagccactacaaggtataattctaatccataccttccatttttcacaattatgaaatgatgtcccattctatagatctgtatttcataagt |
7281451 |
T |
|
| Q |
118 |
tgacaatcaatttgcattctatcatctcatggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281452 |
tgacaatcaatttgcattctatcatctcatggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaatt |
7281551 |
T |
|
| Q |
218 |
gtgttgcgtgacaacaaagcaataacaatggtaagggagcacattgttaggaaggaaggaaggaaagaaccaaggaggcaactttactgaatttaacttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281552 |
gtgttgcgtgacaacaaagcaataacaatggtaagggagcacattgttaggaaggaaggaaggaaagaaccaaggaggcaactttactgaatttaacttg |
7281651 |
T |
|
| Q |
318 |
aaacttgtttatttg-aaaatatttttatctataacttataattatttagcttgaactattatacaatcatttgatgtttctactttggaagacaacaat |
416 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7281652 |
aaacttgtttatttgtaaaatatttttatctataacttataattatttagcttgaagtattatacaatcatttgatgtttctactttggaagacaacaat |
7281751 |
T |
|
| Q |
417 |
tcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagactaatctttttactaaagtcactattgcagcttggatcaaaatgag |
516 |
Q |
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| T |
7281752 |
tcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagactaatc-ttttactaaagtcactattgcagcttggatcaaaatgag |
7281850 |
T |
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| Q |
517 |
gtgcaat |
523 |
Q |
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||||||| |
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| T |
7281851 |
gtgcaat |
7281857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 374 - 523
Target Start/End: Original strand, 7284604 - 7284752
Alignment:
| Q |
374 |
tattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagacta |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7284604 |
tattatacaatcatttgatgtttctactttggaagacaacaattcacaatggttaaaattaaatgttatctcaagtcactattgtttacccataagacta |
7284703 |
T |
|
| Q |
474 |
atctttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat |
523 |
Q |
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| T |
7284704 |
atc-ttttactaaagtcactattgcagcttggatcaaaatgaggtgcaat |
7284752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 17461882 - 17462001
Alignment:
| Q |
149 |
gtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagcaataacaatgg |
248 |
Q |
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|||| ||||||| || |||| || ||||||||||| |||||| |||||||||||||||||||| || ||||||||||| || |||| |||| |||| |
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| T |
17461882 |
gtgcgagggtgggaagatttctgcagaaagagcaaaatcacagaaaatgataaatgcttgtgtgaacttgtgttgcgtaacggcaaatcaattgaaatgc |
17461981 |
T |
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| Q |
249 |
taagggagcacattgttagg |
268 |
Q |
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|||||| |||| |||||||| |
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| T |
17461982 |
taagggtgcacgttgttagg |
17462001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 272
Target Start/End: Original strand, 17455736 - 17455861
Alignment:
| Q |
147 |
tggtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgcgtgacaacaaagcaataacaat |
246 |
Q |
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| T |
17455736 |
tggtgctagggtgggaagatttttgtagaaagtgcaagataacagaaaatgatagatgcttgtgtgaacttgtaatgcgcaacggagaagcaatagaaat |
17455835 |
T |
|
| Q |
247 |
ggtaagggagcacattgttaggaagg |
272 |
Q |
| |
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| |||||| |||||||||||||||| |
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| T |
17455836 |
gataagggttcacattgttaggaagg |
17455861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 17393041 - 17392990
Alignment:
| Q |
149 |
gtgcaagggtggaaatatttttgtagaaagagcaagatcacataaaatgata |
200 |
Q |
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|||| ||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
17393041 |
gtgctagggtgggaagatttttgtagaaagagcaagatcacagaaaatgata |
17392990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 17455498 - 17455559
Alignment:
| Q |
29 |
gccactacaaggtataattctaatccgtatcttccatttttcacaattatgaaatgatgtcc |
90 |
Q |
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| T |
17455498 |
gccactgcaaggtatgattctaattcgtagatttggtttttcacaattatgaaatgatgtcc |
17455559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 40234532 - 40234473
Alignment:
| Q |
165 |
atttttgtagaaagagcaagatcacataaaatgataaatgcttgtgtcaaattgtgttgc |
224 |
Q |
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|||||||||||||||||||||| ||| ||||||||| |||||||||| || ||||||||| |
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| T |
40234532 |
atttttgtagaaagagcaagattacagaaaatgatagatgcttgtgtgaagttgtgttgc |
40234473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 40234396 - 40234360
Alignment:
| Q |
310 |
ttaacttgaaacttgtttatttg-aaaatatttttat |
345 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
40234396 |
ttaacttgaaacttgtttatttgtaaaatatttttat |
40234360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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