View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5233_high_6 (Length: 481)
Name: NF5233_high_6
Description: NF5233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5233_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 234 - 462
Target Start/End: Complemental strand, 42060929 - 42060701
Alignment:
| Q |
234 |
tcctggattgtcttattctccttcactctctgtcacttgctctctcgttaaattcaacacgcaaatgctttaaatcctttcatttccttcatatttctcc |
333 |
Q |
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| T |
42060929 |
tcctggattgtcttattctccttcactctctgttacttgctctctcgttaaattcaacacgctcatgctttaaatcctttcatctccttcatatttctcc |
42060830 |
T |
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| Q |
334 |
tttatgtaattccaaattatttttactgttttgtgagtcacgattccgatgaagatagagtttttgagacacctacaaacaaacatgtatttgtcttcat |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42060829 |
tttatgtaattccaaattatttttactgttttgtgagtcacgattccgatgaagatagagtttttgagacacctacaaacaaacatgtatttgtcttcat |
42060730 |
T |
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| Q |
434 |
gatttatctttatgaaattttatacgacc |
462 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42060729 |
gatttatctttatgaaattttatacgacc |
42060701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 42061218 - 42061004
Alignment:
| Q |
16 |
atacaaagaatattaaaattaaaaatgtatttacttttcatccgatgagtttttctgtttgtatttgcagaaaatatgaaatacatannnnnnnnn--ac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
42061218 |
atacaaagaatattaaaattaaaaatgtatttacttttcatccgatgagttgttctgtttgtatttgcaaaaaatatgaaatacatatttttttttttac |
42061119 |
T |
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| Q |
114 |
aagaaaatatgaaatatatgatatgtagacaagccttgtcgtaaatttttattcatcgctctacatattgagttaatgttgatggtagttcgatcggtaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
42061118 |
aagaaaatatgaaatatatgatatgtagacaagcctcgtcataaatttttattcatcgctctacatattgaattaatgttgatggtagttcgataggtaa |
42061019 |
T |
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| Q |
214 |
cctattagatcagaa |
228 |
Q |
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|||| |||||||||| |
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| T |
42061018 |
cctagtagatcagaa |
42061004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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